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Pull requests: loculus-project/loculus

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Pull requests list

demo, maybe: Subset lineage YAML files to observed values performance preview Triggers a deployment to argocd
#6287 opened Apr 16, 2026 by theosanderson Member • Draft
feat(backend): get rid of unused hibernate dependency backend related to the loculus backend component dependencies Pull requests that update a dependency file java Pull requests that update Java code preview Triggers a deployment to argocd
#6286 opened Apr 16, 2026 by anna-parker Contributor Loading…
3 tasks
1
chore(deps): bump the minorandpatch group in /docs with 3 updates dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6285 opened Apr 15, 2026 by dependabot bot Loading…
feat(website): hierarchical filtering on host organism via lineage file
#6281 opened Apr 15, 2026 by maverbiest Contributor • Draft
3 tasks
feat(deposition): add constants for mapping between database keys and Loculus field names for external metadata fields deposition related to ENA/INSDC deposition refactoring Code requires refactoring
#6278 opened Apr 14, 2026 by anna-parker Contributor Loading…
3 tasks done
4
fix(deposition): fix retry code for case where users submitted bioprojects and biosamples deposition related to ENA/INSDC deposition
#6275 opened Apr 14, 2026 by anna-parker Contributor Loading…
2 of 3 tasks
11
feat(deposition): remove unnecessary states deposition related to ENA/INSDC deposition refactoring Code requires refactoring
#6273 opened Apr 13, 2026 by anna-parker Contributor Loading…
3 tasks done
6
feat(taxonomy): Host organism categories endpoint
#6272 opened Apr 13, 2026 by maverbiest Contributor • Draft
3 tasks done
feat!(backend): move internal endpoints into internal controller service backend related to the loculus backend component
#6267 opened Apr 12, 2026 by anna-parker Contributor Loading…
3 tasks done
1
12
feat(deposition): refactor to use SQLAlchemy deposition related to ENA/INSDC deposition refactoring Code requires refactoring
#6264 opened Apr 10, 2026 by anna-parker Contributor Loading…
2 of 3 tasks
2
24
feat(website): Metadata documentation for generated fields deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd website Tasks related to the web application
#6259 opened Apr 10, 2026 by tombch Collaborator • Draft
3 tasks
feat!(backend, website): add a new backend endpoint to get organism for an accession preview Triggers a deployment to argocd
#6255 opened Apr 10, 2026 by anna-parker Contributor Loading…
1 of 3 tasks
1
5
chore(deps): bump astro from 5.17.1 to 6.1.5 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6252 opened Apr 8, 2026 by dependabot bot Loading…
chore(deps): bump @astrojs/node from 9.5.2 to 10.0.4 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6251 opened Apr 8, 2026 by dependabot bot Loading…
Add OAuth-style authorization flow for external applications preview Triggers a deployment to argocd
#6240 opened Apr 8, 2026 by theosanderson Member • Draft
3 tasks
2
chore(deps-dev): bump vite from 7.3.1 to 7.3.2 in /keycloak/keycloakify dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6232 opened Apr 6, 2026 by dependabot bot Loading…
Add organism switch button to navigation submenu preview Triggers a deployment to argocd website Tasks related to the web application
#6229 opened Apr 2, 2026 by theosanderson Member Loading…
13
Fix Keycloak database service naming for ephemeral dev deployments deployment Code changes targetting the deployment infrastructure keycloak Related to keycloak and keycloakify preview Triggers a deployment to argocd
#6216 opened Apr 1, 2026 by theosanderson Member Loading…
3 tasks done
10
fix: Update SMTP password in values_preview_server.yaml deployment Code changes targetting the deployment infrastructure
#6213 opened Apr 1, 2026 by theosanderson Member Loading…
1
feat(website): add tooltips for metadata field descriptions to search ui deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd website Tasks related to the web application
#6209 opened Mar 30, 2026 by tombch Collaborator Loading…
3 tasks
7
chore(deps): bump astro from 5.17.1 to 5.18.1 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#6201 opened Mar 26, 2026 by dependabot bot Loading…
refactor(backend): move revocation versionComment from dedicated column to metadata backend related to the loculus backend component preview Triggers a deployment to argocd update_db_schema
#6198 opened Mar 26, 2026 by theosanderson-agent Collaborator Loading…
7 tasks done
12
chore(deps): bump the patch group across 1 directory with 7 updates dependencies Pull requests that update a dependency file java Pull requests that update Java code
#6163 opened Mar 19, 2026 by dependabot bot Loading…
feat(website): restore previous search button website Tasks related to the web application
#6147 opened Mar 16, 2026 by tombch Collaborator • Draft
3 tasks
5
testing deployment Code changes targetting the deployment infrastructure
#6130 opened Mar 12, 2026 by anna-parker Contributor • Draft
3 tasks
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