feat: automatic K selection (CellCharter's ClusterAutoK) - #1276
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selmanozleyen wants to merge 10 commits into
Draft
feat: automatic K selection (CellCharter's ClusterAutoK) #1276selmanozleyen wants to merge 10 commits into
selmanozleyen wants to merge 10 commits into
Codecov / codecov/project
succeeded
Aug 22, 2026 in 0s
79.15% (target 1.00%)
View this Pull Request on Codecov
79.15% (target 1.00%)
Details
Codecov Report
❌ Patch coverage is 95.48611% with 13 lines in your changes missing coverage. Please review.
✅ Project coverage is 79.15%. Comparing base (76b6757) to head (ca085f2).
Additional details and impacted files
@@ Coverage Diff @@
## main #1276 +/- ##
==========================================
+ Coverage 78.60% 79.15% +0.55%
==========================================
Files 63 65 +2
Lines 9348 9562 +214
Branches 1559 1589 +30
==========================================
+ Hits 7348 7569 +221
+ Misses 1426 1419 -7
Partials 574 574 | Files with missing lines | Coverage Δ | |
|---|---|---|
| src/squidpy/_docs.py | 95.29% <100.00%> (ø) |
|
| src/squidpy/_utils.py | 70.46% <100.00%> (+0.25%) |
⬆️ |
| src/squidpy/experimental/im/_detect_tissue.py | 67.77% <100.00%> (ø) |
|
| ...c/squidpy/experimental/im/_stain/_decomposition.py | 91.86% <100.00%> (ø) |
|
| src/squidpy/gr/_nhood.py | 76.65% <91.66%> (+1.65%) |
⬆️ |
| src/squidpy/gr/_cluster_auto_k.py | 95.08% <95.08%> (ø) |
|
| src/squidpy/gr/_autok.py | 96.22% <96.22%> (ø) |
|
| src/squidpy/gr/_niche.py | 81.25% <95.60%> (+5.10%) |
⬆️ |
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