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using TypedDict instead of NamedTuple from now on

Status: Open.

#1275 In scverse/squidpy;

· selmanozleyen opened on Aug 21, 2026

inplace vs copy unification in niche function

Status: Open.

#1273 In scverse/squidpy;

· selmanozleyen opened on Aug 21, 2026

Integration Testing CI Test Failure on python 3.14

Status: Open.

#1272 In scverse/squidpy;

· scverse-issue-creator opened on Aug 21, 2026

Integration Testing CI Test Failure on python 3.12

Status: Open.

#1271 In scverse/squidpy;

· scverse-issue-creator opened on Aug 21, 2026

spatial_scatter uses inconsistent spatial_key for image validation and loading

Status: Open.

#1269 In scverse/squidpy;

· hwr9912 opened on Aug 19, 2026

Integration Testing CI Test Failure on python 3.14 with prerelease dependencies

Status: Open.

#1258 In scverse/squidpy;

· scverse-issue-creator opened on Aug 12, 2026

spatial_autocorr crashes when the graph contains singletons

Status: Open.

#1256 In scverse/squidpy;

· durr1602 opened on Aug 10, 2026

Add automatic K selection (CellCharter's ClusterAutoK) for the cellcharter niche flavor

Status: Open.

#1244 In scverse/squidpy;

· selmanozleyen opened on Jul 19, 2026

Tests for the STalign port (not just shape/wiring checks)

Status: Open.

#1243 In scverse/squidpy;

· selmanozleyen opened on Jul 19, 2026

Radial kernel + cutoff for neighborhood graph

Status: Open.

#1241 In scverse/squidpy;

· durr1602 opened on Jul 7, 2026

Tutorial request: Stereo-seq (BGI STOmics) analysis — bin vs cellbin

Status: Open.

#1228 In scverse/squidpy;

· asmlgkj opened on Jun 24, 2026

Add persistence diagrams for persistent homology analysis

Status: Open.

#1225 In scverse/squidpy;

· a12dongithub opened on Jun 22, 2026