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chore(deps): bump the actions-deps group across 1 directory with 6 updates #1262

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chore(deps): bump the actions-deps group across 1 directory with 6 updates #1262

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4 changes: 2 additions & 2 deletions .github/workflows/build.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -17,13 +17,13 @@ jobs:
package:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
with:
filter: blob:none
fetch-depth: 0
persist-credentials: false
- name: Install uv
uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
uses: astral-sh/setup-uv@20cfd1bf945f4377ade1205e4dbc17946fc9a30d # v10.0.1
- name: Build package
run: uv build
- name: Check package
Expand Down
6 changes: 3 additions & 3 deletions .github/workflows/release.yaml
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Expand Up @@ -18,16 +18,16 @@ jobs:
contents: read
id-token: write # IMPORTANT: this permission is mandatory for trusted publishing
steps:
- uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
with:
filter: blob:none
fetch-depth: 0
persist-credentials: false
- name: Install uv
uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
uses: astral-sh/setup-uv@20cfd1bf945f4377ade1205e4dbc17946fc9a30d # v10.0.1
with:
enable-cache: false
- name: Build package
run: uv build
- name: Publish package distributions to PyPI
uses: pypa/gh-action-pypi-publish@cef221092ed1bacb1cc03d23a2d87d1d172e277b # v1.14.0
uses: pypa/gh-action-pypi-publish@dc37677b2e1c63e2034f94d8a5b11f265b73ba33 # v1.14.2
14 changes: 7 additions & 7 deletions .github/workflows/test-notebooks.yaml
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Expand Up @@ -21,21 +21,21 @@ jobs:
ensure-data-is-cached:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
with:
filter: blob:none
fetch-depth: 0
persist-credentials: false

- name: Install uv
uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
uses: astral-sh/setup-uv@20cfd1bf945f4377ade1205e4dbc17946fc9a30d # v10.0.1
with:
enable-cache: false
python-version: "3.14"

- name: Restore data cache
id: data-cache
uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0
uses: actions/cache@55cc8345863c7cc4c66a329aec7e433d2d1c52a9 # v6.1.0
with:
path: data # IMPORTANT: this will fail if scanpy.settings.datasetdir default changes
key: data-${{ hashFiles('**/download_data.py') }}
Expand All @@ -58,24 +58,24 @@ jobs:
python: ["3.12"]

steps:
- uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
with:
submodules: recursive
persist-credentials: false
- name: Set up Python ${{ matrix.python }}
uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0
uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
with:
python-version: ${{ matrix.python }}

- uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
- uses: astral-sh/setup-uv@20cfd1bf945f4377ade1205e4dbc17946fc9a30d # v10.0.1
with:
enable-cache: true
python-version: ${{ matrix.python }}
cache-dependency-glob: pyproject.toml

- name: Restore data cache
id: data-cache
uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0
uses: actions/cache@55cc8345863c7cc4c66a329aec7e433d2d1c52a9 # v6.1.0
with:
path: data # IMPORTANT: this will fail if scanpy.settings.datasetdir default changes
key: data-${{ hashFiles('**/download_data.py') }}
Expand Down
24 changes: 12 additions & 12 deletions .github/workflows/test.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -32,21 +32,21 @@ jobs:
ensure-data-is-cached:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
with:
filter: blob:none
fetch-depth: 0
persist-credentials: false

- name: Install uv
uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
uses: astral-sh/setup-uv@20cfd1bf945f4377ade1205e4dbc17946fc9a30d # v10.0.1
with:
enable-cache: false
python-version: "3.14"

- name: Restore data cache
id: data-cache
uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0
uses: actions/cache@55cc8345863c7cc4c66a329aec7e433d2d1c52a9 # v6.1.0
with:
path: data # IMPORTANT: this will fail if scanpy.settings.datasetdir default changes
key: data-${{ hashFiles('**/download_data.py') }}
Expand All @@ -68,14 +68,14 @@ jobs:
outputs:
envs: ${{ steps.get-envs.outputs.envs }}
steps:
- uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
with:
filter: blob:none
fetch-depth: 0
persist-credentials: false

- name: Install uv
uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
uses: astral-sh/setup-uv@20cfd1bf945f4377ade1205e4dbc17946fc9a30d # v10.0.1
with:
enable-cache: true
cache-dependency-glob: pyproject.toml
Expand Down Expand Up @@ -113,14 +113,14 @@ jobs:
runs-on: ${{ matrix.os }}
continue-on-error: ${{ contains(matrix.env.name, 'pre') }}
steps:
- uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
with:
filter: blob:none
fetch-depth: 0
persist-credentials: false

- name: Install uv
uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
uses: astral-sh/setup-uv@20cfd1bf945f4377ade1205e4dbc17946fc9a30d # v10.0.1
with:
python-version: ${{ matrix.env.python }}
cache-dependency-glob: pyproject.toml
Expand All @@ -130,7 +130,7 @@ jobs:

- name: Restore data cache
id: data-cache
uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0
uses: actions/cache@55cc8345863c7cc4c66a329aec7e433d2d1c52a9 # v6.1.0
with:
path: data # IMPORTANT: this will fail if scanpy.settings.datasetdir default changes
key: data-${{ hashFiles('**/download_data.py') }}
Expand Down Expand Up @@ -163,7 +163,7 @@ jobs:

- name: Archive figures generated during testing
if: always()
uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4.6.2
uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
with:
name: visual_test_results_${{ runner.os }}_${{ matrix.env.name }}
path: ${{ github.workspace }}/tests/figures/*
Expand All @@ -176,14 +176,14 @@ jobs:
id-token: write # for codecov OIDC
contents: read
steps:
- uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
with:
filter: blob:none
fetch-depth: 0
persist-credentials: false

- name: Install uv
uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
uses: astral-sh/setup-uv@20cfd1bf945f4377ade1205e4dbc17946fc9a30d # v10.0.1
with:
python-version: "3.14"
cache-dependency-glob: pyproject.toml
Expand All @@ -193,7 +193,7 @@ jobs:

- name: Restore data cache
id: coverage-data-cache
uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0
uses: actions/cache@55cc8345863c7cc4c66a329aec7e433d2d1c52a9 # v6.1.0
with:
path: data # IMPORTANT: this will fail if scanpy.settings.datasetdir default changes
key: data-${{ hashFiles('**/download_data.py') }}
Expand Down
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