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Test all modes

prio:high

Status: Open.

#95 In theislab/hadge;

· LuisHeinzlmeier opened on Dec 22, 2025

Update all processes to use <code>ext.args</code>

prio:low

Status: Open.

#93 In theislab/hadge;

· LuisHeinzlmeier opened on Dec 9, 2025

bff_methods = 'CLUSTER' is not working

prio:low

Status: Open.

#92 In theislab/hadge;

· LuisHeinzlmeier opened on Dec 9, 2025

Subsetting gt_donor.vcf

prio:normal

Status: Open.

#90 In theislab/hadge;

· LuisHeinzlmeier opened on Dec 6, 2025

Rewrite donor_match in Python

prio:low

Status: Open.

#88 In theislab/hadge;

· LuisHeinzlmeier opened on Nov 23, 2025

Barcodes input as optional

prio:high

Status: Open.

#85 In theislab/hadge;

· LuisHeinzlmeier opened on Nov 22, 2025

Test deconvolution methods outputs

prio:low

Status: Open.

#84 In theislab/hadge;

· LuisHeinzlmeier opened on Nov 21, 2025

demuxem does not work

prio:low

Status: Open.

#81 In theislab/hadge;

· LuisHeinzlmeier opened on Nov 21, 2025

Run hadge with multiple samples/tasks

prio:normal

Status: Open.

#80 In theislab/hadge;

· LuisHeinzlmeier opened on Nov 21, 2025

Test modules for <code>ext.args</code> and different inputs

prio:low

Status: Open.

#72 In theislab/hadge;

· LuisHeinzlmeier opened on Aug 13, 2025

Update meta.yml of demuxem

prio:low

Status: Open.

#71 In theislab/hadge;

· LuisHeinzlmeier opened on Aug 13, 2025

Souporcell clustering panicked at 'no entry found for key' for some samples

Status: Open.

#57 In theislab/hadge;

· bednarsky opened on Jul 4, 2024