Scripts

Contains my own scripts for various tasks

Name		Name	Last commit message	Last commit date
README.md		README.md
abstract_snpeff_ann_output.py		abstract_snpeff_ann_output.py
get_bbduk_metrics.sh		get_bbduk_metrics.sh
k-s-gene_abs_snpeff_ann.py		k-s-gene_abs_snpeff_ann.py
lfs.sh		lfs.sh
ncov19_pipe.sh		ncov19_pipe.sh
ncov19_variant_calling_duplicates-pipe.sh		ncov19_variant_calling_duplicates-pipe.sh
nf-viralrecon_results-summary_aggregation.sh		nf-viralrecon_results-summary_aggregation.sh
pe-read-merger-fq.sh		pe-read-merger-fq.sh
pe-read-merger_NextSeq.sh		pe-read-merger_NextSeq.sh
per-gene_abs_snpeff_ann.py		per-gene_abs_snpeff_ann.py
rename.sh		rename.sh
s-gene_abs_snpeff_ann.py		s-gene_abs_snpeff_ann.py
summarise_variants_attributes_from_vcf.py		summarise_variants_attributes_from_vcf.py

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