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Initial upload of CVA10 dataset#466

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add-cva10
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Initial upload of CVA10 dataset#466
nneune wants to merge 1 commit into
masterfrom
add-cva10

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@nneune

@nneune nneune commented Jul 21, 2026

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Description of proposed changes

This PR introduces a new Coxsackievirus A10 dataset rooted on the Kowalik reference sequence. It includes all essential files for Nextclade compatibility, such as the reference genome, genome annotation, and detailed documentation. The dataset supports subgenotype assignment, phylogenetic placement, and sequence quality control for Coxsackievirus A10.

New Coxsackievirus A10 Dataset

  • Dataset documentation:

    • Added a comprehensive README.md explaining dataset scope, subgenogroup definitions, reference types, and usage instructions.
    • Added a CHANGELOG.md with an initial release entry.
  • Reference data and genome annotation:

    • Added the Kowalik reference genome sequence in reference.fasta.
    • Added a GFF3 genome annotation file with gene and protein features for the Kowalik reference.

Checklist

  • Send out to ENPEN members to test

@nneune
nneune had a problem deploying to refs/pull/466/merge July 21, 2026 09:45 — with GitHub Actions Failure
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