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Unexpected error while finalizing task 'collect_refs' - cause: Unknown variable 'outputDir'

Status: Open.

#31 In marbl/MetaCompass;

· freya0000 opened on Apr 28, 2026

Error in Cluster step

Status: Open.

#29 In marbl/MetaCompass;

· wwood opened on Jul 19, 2025

Error in rule polish_contigs (ntHits?)

Status: Open.

#27 In marbl/MetaCompass;

· lxsteiner opened on Dec 18, 2023

snakemake: error: argument **-T/--restart-times: expected one argument**

Status: Open.

#26 In marbl/MetaCompass;

· esraagithub opened on Apr 3, 2022

Error when running MetaCompass

Status: Open.

#25 In marbl/MetaCompass;

· bgmfddg opened on Mar 13, 2022

Could not open reference sequences file /refseq/markers/genome2markers.length

Status: Open.

#24 In marbl/MetaCompass;

· zhan4429 opened on Jan 16, 2022

Error --pilon polish contigs

Status: Open.

#23 In marbl/MetaCompass;

· GeonhoCho opened on Oct 18, 2021

Error in job reference_selection

Status: Open.

#21 In marbl/MetaCompass;

· AKBode opened on Sep 30, 2021

snakemake: error: unrecognized arguments: -T

Status: Open.

#20 In marbl/MetaCompass;

· TealFurnholm opened on Apr 17, 2021

Bowtie2 error

Status: Open.

#19 In marbl/MetaCompass;

· mredrejo opened on Feb 15, 2021

Intallation problems (MacOS Catalina)

Status: Open.

#18 In marbl/MetaCompass;

· mredrejo opened on Feb 13, 2021

one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode

Status: Open.

#17 In marbl/MetaCompass;

· MarcelaHer opened on Aug 7, 2020