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Merged
tristanpwdennis merged 2 commits into from
Oct 23, 2025
Merged

updating bucket paths for amin1.0 rebuild #112

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8cbe839
ud bucket paths
tristanpwdennis Oct 23, 2025
119afc9
fix number
tristanpwdennis Oct 23, 2025
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20 changes: 10 additions & 10 deletions docs/amin1/download.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -44,7 +44,7 @@
},
{
"cell_type": "code",
"execution_count": 4,
"execution_count": null,
"metadata": {
"tags": [
"remove-output"
Expand All @@ -64,8 +64,8 @@
}
],
"source": [
"!mkdir -pv ~/vo_amin_release/v1/metadata\n",
"!gsutil rsync -r gs://vo_amin_release/v1/metadata/ ~/vo_amin_release/v1/metadata/"
"!mkdir -pv ~/vo_amin_release/v1.0/metadata\n",
"!gsutil rsync -r gs://vo_amin_release_master_us_central1/v1.0/metadata/ ~/vo_amin_release/v1.0/metadata/"
]
},
{
Expand All @@ -77,7 +77,7 @@
},
{
"cell_type": "code",
"execution_count": 5,
"execution_count": null,
"metadata": {},
"outputs": [
{
Expand All @@ -98,7 +98,7 @@
}
],
"source": [
"!head ~/vo_amin_release/v1/metadata/samples.meta.csv"
"!head ~/vo_amin_release/v1.0/metadata/samples.meta.csv"
]
},
{
Expand All @@ -124,7 +124,7 @@
"\n",
"A catalog file mapping sample identifiers to download URLs is available at this URL:\n",
"\n",
"* https://storage.googleapis.com/vo_amin_release/v1/metadata/wgs_snp_data.csv\n",
"* https://storage.googleapis.com/vo_amin_release_master_us_central1/v1.0/metadata/wgs_snp_data.csv\n",
"\n",
"Alternatively if you ran the gsutil rsync command above to download metadata then this file will already be present on your local file system. \n",
"\n",
Expand All @@ -133,7 +133,7 @@
},
{
"cell_type": "code",
"execution_count": 6,
"execution_count": null,
"metadata": {},
"outputs": [
{
Expand All @@ -154,7 +154,7 @@
}
],
"source": [
"!head ~/vo_amin_release/v1/metadata/wgs_snp_data.csv | cut -d, -f1,2"
"!head ~/vo_amin_release/v1.0/metadata/wgs_snp_data.csv | cut -d, -f1,2"
]
},
{
Expand Down Expand Up @@ -204,7 +204,7 @@
},
{
"cell_type": "code",
"execution_count": 8,
"execution_count": null,
"metadata": {},
"outputs": [
{
Expand All @@ -225,7 +225,7 @@
}
],
"source": [
"!head ~/vo_amin_release/v1/metadata/wgs_snp_data.csv | cut -d, -f1,4"
"!head ~/vo_amin_release/v1.0/metadata/wgs_snp_data.csv | cut -d, -f1,4"
]
},
{
Expand Down