mapping from alignment paf file or pass/fail.fastq to the sampled_read_processed_genome_*.fasta

[YantingHuang]

Hi,

I would like to compare the basecall result (from alignment paf file or pass/fail.fastq file) with the sampled fasta file (sampled_read_processed_genome_*.fasta ) to see how the basecalling goes for a specific region. Is this any identifiers that I can use to map these two sets of data?

[liyu95]

Hi,

Thank you very much for your interest!
Yes, each read can be identified with a "uuid". Alternatively, you can also use minimap to map the reads.

Sincerely,
Yu