Skip to content

feat: splicetransformer subworkflow and modules (spt) - #29

Merged
alejandrogzi merged 1 commit into
masterfrom
spt
Aug 23, 2026
Merged

alejandrogzi merged 1 commit into
masterfrom
spt

Conversation

@alejandrogzi

Copy link
Copy Markdown
Member

Mirrors spliceai: subworkflows/splicetransformer (chunk->predict->wigToBigWig->bigWigMerge->publish) + modules/nextflow/splicetransformer/{chunk,predict,derive,publish}, container ghcr.io/hillerlab/splicetransformer:latest flank 4000. Tested 12k real (8m) + 12M/half/full mock on hg38 chr22.

- new subworkflows/splicetransformer (SPLICETRANSFORMER = chunk->predict->wigToBigWig->bigWigMerge->publish)
- new modules/nextflow/splicetransformer/{chunk,predict,derive,publish}
- mirrors spliceai, container ghcr.io/hillerlab/splicetransformer:latest, flank 4000
@alejandrogzi
alejandrogzi merged commit b928ae2 into master Aug 23, 2026
2 checks passed
@alejandrogzi
alejandrogzi deleted the spt branch August 23, 2026 23:47
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant