Search results

Potential adverse effect of small chromosome coverage limit

performanceIssues related to computational perfromanceIssues related to computational perfromance

questionFurther information is requestedFurther information is requested

Status: Open.

#372 In ablab/IsoQuant;

· ljwharbers opened on Mar 10, 2026

Error with running visualize.py

visualizerRelates to visualization moduleRelates to visualization module

Status: Open.

#369 In ablab/IsoQuant;

· zhujack opened on Feb 6, 2026

wrong gene_id assignment in transcript_models.gtf

algorithmIssue requires algorithmic improvementIssue requires algorithmic improvement

weird resultsSomething looks odd in the resulting filesSomething looks odd in the resulting files

Status: Open.

#363 In ablab/IsoQuant;

· defendant602 opened on Jan 19, 2026

Question regarding parallelisation in IsoQuant

performanceIssues related to computational perfromanceIssues related to computational perfromance

Status: Open.

#359 In ablab/IsoQuant;

· andr-kun opened on Dec 18, 2025

Q: best practices?

performanceIssues related to computational perfromanceIssues related to computational perfromance

Status: Open.

#357 In ablab/IsoQuant;

· sklages opened on Dec 17, 2025

transcripts absent in TSV but present in GTF

algorithmIssue requires algorithmic improvementIssue requires algorithmic improvement

bugSomething isn't workingSomething isn't working

weird resultsSomething looks odd in the resulting filesSomething looks odd in the resulting files

Status: Open.

#353 In ablab/IsoQuant;

· defendant602 opened on Dec 5, 2025

Output transcript usage matrix.

enhancementNew feature or requestNew feature or request

Status: Open.

#352 In ablab/IsoQuant;

· liuzhenyu-yyy opened on Dec 2, 2025

Visualize.py with --find_genes

visualizerRelates to visualization moduleRelates to visualization module

Status: Open.

#351 In ablab/IsoQuant;

· GiliWolf opened on Nov 25, 2025

Visualize.py - Error in finding input files

visualizerRelates to visualization moduleRelates to visualization module

Status: Open.

#349 In ablab/IsoQuant;

· GiliWolf opened on Nov 23, 2025

visualize.py error

visualizerRelates to visualization moduleRelates to visualization module

Status: Open.

#346 In ablab/IsoQuant;

· akinaoh opened on Nov 3, 2025

Reads Assignment Strategy for Highly Similar Isoforms and Novel Isoform Validation

Status: Open.

#345 In ablab/IsoQuant;

· yjliuhub opened on Oct 26, 2025

Reporting novel unspliced isoforms without polyA tails with --polya_requirement

enhancementNew feature or requestNew feature or request

Status: Open.

#342 In ablab/IsoQuant;

· hmutpw opened on Oct 10, 2025