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WIP: Add MSA homologue search and RAG-augmeneted E1 embedding/scoring pipelines#25

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nrafaili wants to merge 2 commits intoSynthyra:mainfrom
nrafaili:e1-rag
Open

WIP: Add MSA homologue search and RAG-augmeneted E1 embedding/scoring pipelines#25
nrafaili wants to merge 2 commits intoSynthyra:mainfrom
nrafaili:e1-rag

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Commits on Mar 17, 2026