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Fix MWE bugs across genotype preprocessing, enrichment, EMS, TWAS/colocalization, and molecular phenotype notebooks#1387

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gaow merged 12 commits into
StatFunGen:mainfrom
jaempawi:fix/mwe-validation-pass-1
Jul 8, 2026
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Fix MWE bugs across genotype preprocessing, enrichment, EMS, TWAS/colocalization, and molecular phenotype notebooks#1387
gaow merged 12 commits into
StatFunGen:mainfrom
jaempawi:fix/mwe-validation-pass-1

fix(apa-calling): remove hardcoded DaPars2 script path and fix GTF/wi…

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