Fix .bed input path handling and reference_data paths#1373

Merged

gaow merged 3 commits into

StatFunGen:mainfrom

Jun 23, 2026

Commits on Jun 23, 2026

Fix output filename for .bed TPM input in bulk_expression_QC.R

Anjing Liu
and
claude
committed
Fix reference_data paths to use input/reference_data prefix in gene_annotation notebook

Anjing Liu
and
claude
committed
Remove spurious input/ prefix from descriptive text in gene_annotation notebook

Anjing Liu
and
claude
committed