Refactor claude

.devcontainer/Dockerfile

@@ -1,4 +1,4 @@
-FROM debian:bookworm
+FROM debian:trixie
 
 USER root
 
@@ -24,7 +24,7 @@ RUN apt-get update \
     && apt-get -y install --no-install-recommends apt-utils dialog 2>&1 \
     # \
     # Verify git, process tools, lsb-release (useful for CLI installs) installed\
-    && apt-get -y install git iproute2 procps lsb-release \
+    && apt-get -y install git git-lfs vim-nox nano iproute2 procps lsb-release \
     #\
     # Install C++ tools\
     && apt-get -y install build-essential \
@@ -52,17 +52,6 @@ RUN apt-get update \
     && ssh-keyscan github.com >> ~vscode/.ssh/known_hosts \
     && chown -R vscode.$USER_GID ~vscode/.ssh
 
-# install prerequistes from Lncmi debian repo
-RUN apt update \
-    && apt-get install -y lsb-release \
-    && apt-get install -y debian-keyring \
-    && cp /usr/share/keyrings/debian-maintainers.gpg /etc/apt/trusted.gpg.d \
-    && echo "deb http://euler.lncmig.local/~christophe.trophime@LNCMIG.local/debian/ $(lsb_release -cs) main" > /etc/apt/sources.list.d/lncmi.list \
-    && apt update \
-    && apt-get -y install python3-chevron
-
-# Install latest gsh dev version (support for BoundingBox) ?
-#RUN python3 -m pip install -i https://gmsh.info/python-packages --force-reinstall --no-cache-dir gmsh-dev
 
 # Clean up
 RUN apt-get autoremove -y \

.devcontainer/devcontainer.json

@@ -45,7 +45,8 @@
             "extensions": [
                 "ms-python.python",
                 "ms-python.vscode-pylance",
-                "ms-python.black-formatter"
+                "ms-python.black-formatter",
+                "adamvoss.vscode-languagetool"
             ]
         }
     },

.github/workflows/pytest.yml

@@ -0,0 +1,72 @@
+name: Run Tests
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+
+jobs:
+  test:
+    runs-on: ubuntu-24.04
+    strategy:
+      matrix:
+        python-version: ['3.11', '3.12']
+
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -e ".[dev]"
+
+    - name: Run pytest
+      run: |
+        pytest --cov=python_magnetgeo --cov-report=xml --cov-report=term
+
+    - name: Upload coverage to Codecov
+      uses: codecov/codecov-action@v4
+      if: matrix.python-version == '3.11'
+      with:
+        file: ./coverage.xml
+        flags: unittests
+        fail_ci_if_error: false
+
+  test-debian:
+    runs-on: ubuntu-24.04
+    container:
+      image: debian:stable
+    strategy:
+      matrix:
+        python-version: ['3.13']
+
+    steps:
+    - name: Install system dependencies
+      run: |
+        apt-get update
+        apt-get install -y python${{ matrix.python-version }} python3-venv git
+
+    - name: Checkout code
+      uses: actions/checkout@v4
+
+    - name: Create virtual environment
+      run: |
+        python${{ matrix.python-version }} -m venv venv
+
+    - name: Install dependencies in virtual environment
+      run: |
+        . venv/bin/activate
+        python -m pip install --upgrade pip
+        pip install -e ".[dev]"
+
+    - name: Run pytest in virtual environment
+      run: |
+        . venv/bin/activate
+        pytest --cov=python_magnetgeo --cov-report=xml --cov-report=term

.gitignore

@@ -31,6 +31,10 @@ wheels/
 .installed.cfg
 *.egg
 
+# Sphinx docs
+docs/_build
+docs/_statics
+
 # PyInstaller
 #  Usually these files are written by a python script from a template
 #  before PyInstaller builds the exe, so as to inject date/other infos into it.
@@ -91,6 +95,7 @@ celerybeat-schedule
 
 # virtualenv
 .venv
+env/
 venv/
 ENV/
 
@@ -121,5 +126,17 @@ ENV/
 
 *~
 *.orig
+*.backup
 *log
 \#*\#
+
+# ut track this specific test file
+!tests.cfg/*.yaml
+
+# container
+*.sif
+*.simg
+
+# images
+*.png
+

AUTHORS.md

@@ -0,0 +1,11 @@
+---
+title: Credits
+---
+
+# Development Lead
+
+-   Christophe Trophime \<<christophe.trophime@lncmi.cnrs.fr>\>
+
+# Contributors
+
+None yet. Why not be the first?