20 anomalies and tcorr metadate not written to excel output

.github/workflows/publish.yml

@@ -14,24 +14,22 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v6
+      with:
+        fetch-depth: 0  # Fetch all history for tags
 
     - name: Set up Python
       uses: actions/setup-python@v6
       with:
         python-version: '3.12'
 
     - name: Install uv
-      uses: astral-sh/setup-uv@v4
+      uses: astral-sh/setup-uv@v8.1.0
       with:
-        version: "0.5.11"
         enable-cache: true
 
-    - name: Create virtual environment
-      run: uv venv
-
     - name: Install dependencies
-      run: uv sync --all-groups
+      run: uv sync --all-groups --locked
 
     - name: Run tests
       run: uv run pytest tests/ -v
@@ -49,24 +47,22 @@ jobs:
       contents: read
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v6
+      with:
+        fetch-depth: 0  # Fetch all history for tags
 
     - name: Set up Python
       uses: actions/setup-python@v6
       with:
         python-version: '3.12'
 
     - name: Install uv
-      uses: astral-sh/setup-uv@v4
+      uses: astral-sh/setup-uv@v8.1.0
       with:
-        version: "0.5.11"
         enable-cache: true
 
-    - name: Create virtual environment
-      run: uv venv
-
     - name: Build distribution
-      run: uv run --with build python -m build
+      run: uv build
 
     - name: Publish to PyPI
       uses: pypa/gh-action-pypi-publish@release/v1

.github/workflows/sphinx-docs.yml

@@ -17,25 +17,28 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v5
-
+      - uses: actions/checkout@v6
+        with:
+          fetch-depth: 0  # Fetch all history for tags
+
       - name: Set up Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v6
         with:
           python-version: '3.12'
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v8.1.0
+        with:
+          enable-cache: true
 
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          pip install sphinx sphinx-book-theme myst-parser numpydoc sphinx-copybutton sphinx-design
-          pip install -e .
+      # - name: Install dependencies
+      #   run: uv sync --all-groups --locked
 
       - name: Build documentation
-        run: |
-          sphinx-build -b html docs/source docs/_build/html
+        run: uv run --group docs --locked -- sphinx-build -a -b html docs/source docs/_build/html
 
       - name: Upload build artifacts
-        uses: actions/upload-artifact@v5
+        uses: actions/upload-artifact@v7
         with:
           name: sphinx-docs
           path: docs/_build/html/
@@ -58,13 +61,13 @@ jobs:
 
     steps:
       - name: Download artifacts
-        uses: actions/download-artifact@v5
+        uses: actions/download-artifact@v8
         with:
           name: sphinx-docs
           path: ./html
 
       - name: Setup Pages
-        uses: actions/configure-pages@v5
+        uses: actions/configure-pages@v6
 
       - name: Upload to Pages
         uses: actions/upload-pages-artifact@v5

.github/workflows/test_and_build.yml

@@ -14,24 +14,22 @@ jobs:
         python-version: ['3.12', '3.13', '3.14']
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v6
+      with:
+        fetch-depth: 0  # Fetch all history for tags --- IGNORE ---
 
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python-version }}
 
     - name: Install uv
-      uses: astral-sh/setup-uv@v4
+      uses: astral-sh/setup-uv@v8.1.0
       with:
-        version: "0.5.11"
         enable-cache: true
 
-    - name: Create virtual environment
-      run: uv venv
-
     - name: Install dependencies
-      run: uv sync --all-groups
+      run: uv sync --all-groups --locked
 
     - name: Lint with ruff
       run: |
@@ -57,30 +55,28 @@ jobs:
         os: [ubuntu-latest, windows-latest, macos-latest]
 
     steps:
-    - uses: actions/checkout@v4
-
+    - uses: actions/checkout@v6
+      with:
+        fetch-depth: 0  # Fetch all history for tags
+
     - name: Set up Python
       uses: actions/setup-python@v6
       with:
         python-version: '3.12'
 
     - name: Install uv
-      uses: astral-sh/setup-uv@v4
+      uses: astral-sh/setup-uv@v8.1.0
       with:
-        version: "0.5.11"
         enable-cache: true
 
-    - name: Create virtual environment
-      run: uv venv
-
     - name: Build distribution
-      run: uv run --with build python -m build
+      run: uv build
 
     - name: Check distribution with twine
       run: uv run --with twine twine check dist/*
 
     - name: Upload artifacts
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@v7
       with:
         name: distributions-${{ matrix.os }}
         path: dist/

.gitignore

@@ -161,23 +161,12 @@ cython_debug/
 gsolve.code-workspace
 docs/generated/*
 .vscode/settings.json
-fake_data.ipynb
-miller2020.ipynb
-test_meter_correction.ipynb
-test_miller copy.ipynb
-test_miller.ipynb
-test_orig_algorithm.ipynb
-test1.ipynb
-.xxxxxxdevcontainer/devcontainer.json
-.xxxxxxdevcontainer/Dockerfile
 .vscode/launch.json
 /*.ipynb
 examples/scintrex/CG-6_0680_DRFT_CAL2.dat
 examples/scintrex/CG-6_0680_TEST1.dat
 examples/scintrex/lynx_CG6_0041_20220719_Final_1HZ.DAT
 examples/scintrex/lynx_CG6_0041_20220719_Final_FILT.DAT
-run.bat
-examples/surveys/terrain_corrections/wellington1m_lidar.tif
 tuhua_data/*
 paeroa_data/*
 /*.dat