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feat: Add cnv files for oncorefiner#8

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fevac wants to merge 1 commit into
oncorefinerfrom
add_cnv_files
Open

feat: Add cnv files for oncorefiner#8
fevac wants to merge 1 commit into
oncorefinerfrom
add_cnv_files

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@fevac

@fevac fevac commented Jun 12, 2026

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Description

Part of https://github.com/Clinical-Genomics/MTP-oncoflow/issues/34

Added

  • CNV files for oncorefiner TN and TO

How to prepare for test

  • Ssh to relevant server (depending on type of change)
  • Use stage: us
  • Paxa the environment: paxa
  • Install on stage (example for Hasta):
    bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_[TOOL]-t [TOOL] -b [THIS-BRANCH-NAME] -a

How to test

  • Do ...

Expected test outcome

  • Check that ...
  • Take a screenshot and attach or copy/paste the output.

Review

  • Tests executed by
  • "Merge and deploy" approved by
    Thanks for filling in who performed the code review and the test!

This version is a

  • MAJOR - when you make incompatible API changes
  • MINOR - when you add functionality in a backwards compatible manner
  • PATCH - when you make backwards compatible bug fixes or documentation/instructions

Implementation Plan

  • Document in ...
  • Deploy this branch on ...
  • Inform to ...

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2 participants