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Machine Learning and Systems Biology Research Department

MLSB Department at the MPI of Biochemistry, Martinsried, Germany

142 followers
Germany
https://www.biochem.mpg.de/borgwardt

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TOGL TOGL Public

Topological Graph Neural Networks (ICLR 2022)

Python 125 27
SAT SAT Public

Official Pytorch code for Structure-Aware Transformer.

Python 261 39

Repositories

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Showing 10 of 118 repositories

Human_scDVP_Analysis Public

BorgwardtLab/Human_scDVP_Analysis’s past year of commit activity

Python 0 BSD-3-Clause 0 0 0 Updated Dec 24, 2025
CellPick Public
An interactive cell selection tool for spatial omics

BorgwardtLab/CellPick’s past year of commit activity

Python 2 BSD-3-Clause 0 0 0 Updated Dec 12, 2025
bioverse Public

BorgwardtLab/bioverse’s past year of commit activity

Python 1 BSD-3-Clause 0 0 0 Updated Dec 10, 2025
graph-kernels Public
Graph kernels

BorgwardtLab/graph-kernels’s past year of commit activity

C++ 55 GPL-2.0 26 0 0 Updated Dec 3, 2025
RECOMB2026Cosmo Public

BorgwardtLab/RECOMB2026Cosmo’s past year of commit activity

Python 0 0 0 0 Updated Nov 29, 2025
Cosmo Public

BorgwardtLab/Cosmo’s past year of commit activity

Python 0 0 0 0 Updated Nov 29, 2025
AutoGraph Public
Official code for "Flatten Graphs as Sequences: Transformers are scalable graph generators" (NeurIPS 2025)

BorgwardtLab/AutoGraph’s past year of commit activity

Python 11 BSD-3-Clause 1 1 0 Updated Oct 17, 2025
polygraph-benchmark Public
Benchmarking framework for graph generative models

BorgwardtLab/polygraph-benchmark’s past year of commit activity

Python 5 BSD-3-Clause 0 0 0 Updated Oct 14, 2025
orbit-count Public
Python bindings for ORCA (ORbit Counting Algorithm)

BorgwardtLab/orbit-count’s past year of commit activity

C++ 2 GPL-3.0 0 0 0 Updated Oct 12, 2025
rnaglib-experiments Public

BorgwardtLab/rnaglib-experiments’s past year of commit activity

Python 3 0 0 0 Updated Oct 7, 2025

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