[BUG] Error running PCA, version 0.15.2

[sondvo]

Describe the bug
Using rsc ver 0.15.2, error when running PCA

Steps/Code to reproduce bug

merged_adata = scanpy.read_h5ad('YOUR_PATH')
rsc.tl.pca(merged_adata, n_comps=100)

Expected behavior
_spca.check_zero_genes()
AttributeError: 'NoneType' object has no attribute 'check_zero_genes'?

Environment details (please complete the following information):

• Environment location: [Mamba]
• Linux Distro/Architecture: [Ubuntu 22.04 amd64]
• GPU Model/Driver: [A100 and driver 590.48.01]
• CUDA: [13.1]
• Method of Rapids install: [pip]

Additional context
Add any other context about the problem here.

[Intron7]

you can tell me what type(merged_adata.X) is?

[sondvo]

Here it is, thank you.

type(merged_adata.X)
scipy.sparse._csr.csr_matrix

merged_adata.X
<Compressed Sparse Row sparse matrix of dtype 'float32'
with 288358502 stored elements and shape (4281266, 541)>

merged_adata.X.data
array([0.6931472, 0.6931472, 1.3862944, ..., 0.6931472, 0.6931472,
0.6931472], shape=(288358502,), dtype=float32)

[Intron7]

can you please check if this is still present on 0.16.1?

[Intron7]

how did you install rapids-singelcell? did you install did you install the std-dist or the cu compiled packages cu12/cu13?
https://rapids-singlecell.readthedocs.io/en/latest/installation.html

[Intron7]

@sondvo closing because of inactivity more than happy to reopen