diff --git a/.github/workflows/workflow_json.yml b/.github/workflows/workflow_json.yml
index 6b298077..43936987 100644
--- a/.github/workflows/workflow_json.yml
+++ b/.github/workflows/workflow_json.yml
@@ -4,6 +4,8 @@ on:
   pull_request_target:
     branches:
       - dev
+    paths-ignore:
+      - "assets/workflow_jsons/**"
 
 concurrency:
   group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}"
@@ -12,7 +14,6 @@ concurrency:
 jobs:
   generate-workflow-json:
     name: Create workflow JSON using bioflow-insight
-    if: github.actor != 'nf-core-bot'
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6
diff --git a/.nf-core.yml b/.nf-core.yml
index 0744cb91..8ff74ad1 100644
--- a/.nf-core.yml
+++ b/.nf-core.yml
@@ -4,7 +4,7 @@ lint:
     - .github/CONTRIBUTING.md
   actions_schema_validation: false
   multiqc_config: false
-nf_core_version: 3.5.1
+nf_core_version: 3.5.2
 repository_type: pipeline
 template:
   author: Athanasios Baltzis, Jose Espinosa-Carrasco, Harshil Patel
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 8bda8354..28892f4c 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -8,10 +8,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### Enhancements & fixes
 
 - [[PR ##573](https://github.com/nf-core/proteinfold/pull/573)] - Adds affiliations for UNSW Structural Biology Facility (SBF).
+- [[PR #588](https://github.com/nf-core/proteinfold/pulls/588)] - Add `--random_seed` for AF2, Boltz, and ColabFold, removing and replacing `--alphafold2_random_seed`.
 
-| Old parameter | New parameter |
-| ------------- | ------------- |
-|               |               |
+| Old parameter              | New parameter   |
+| -------------------------- | --------------- |
+| `--alphafold2_random_seed` | `--random_seed` |
 
 > **NB:** Parameter has been **updated** if both old and new parameter information is present.
 > **NB:** Parameter has been **added** if just the new parameter information is present.
diff --git a/assets/workflow_jsons/metro_map.json b/assets/workflow_jsons/metro_map.json
index b95f4dae..3715fda2 100644
--- a/assets/workflow_jsons/metro_map.json
+++ b/assets/workflow_jsons/metro_map.json
@@ -800,13 +800,13 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD2_DBS.DOWNLOAD_PDBMMCIF",
-            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_MSA",
+            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_PRED",
             "color": "#E15759",
             "condition": "requested_modes.contains(\"alphafold2\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD2_DBS.DOWNLOAD_PDBMMCIF",
-            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_PRED",
+            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_MSA",
             "color": "#E15759",
             "condition": "requested_modes.contains(\"alphafold2\")"
         },
@@ -818,13 +818,13 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD2_DBS.ARIA2_PDB_SEQRES",
-            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_MSA",
+            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_PRED",
             "color": "#E15759",
             "condition": "requested_modes.contains(\"alphafold2\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD2_DBS.ARIA2_PDB_SEQRES",
-            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_PRED",
+            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_MSA",
             "color": "#E15759",
             "condition": "requested_modes.contains(\"alphafold2\")"
         },
@@ -836,13 +836,13 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD2_DBS.COMBINE_UNIPROT",
-            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_MSA",
+            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_PRED",
             "color": "#E15759",
             "condition": "requested_modes.contains(\"alphafold2\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD2_DBS.COMBINE_UNIPROT",
-            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_PRED",
+            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_MSA",
             "color": "#E15759",
             "condition": "requested_modes.contains(\"alphafold2\")"
         },
@@ -872,7 +872,7 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD2_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD2_DBS.ARIA2_UNCOMPRESS.ZSTD_DECOMPRESS",
+            "B": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD2_DBS.ARIA2_UNCOMPRESS.GUNZIP",
             "color": "#E15759",
             "condition": "requested_modes.contains(\"alphafold2\")"
         },
@@ -884,7 +884,7 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD2_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD2_DBS.ARIA2_UNCOMPRESS.GUNZIP",
+            "B": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD2_DBS.ARIA2_UNCOMPRESS.ZSTD_DECOMPRESS",
             "color": "#E15759",
             "condition": "requested_modes.contains(\"alphafold2\")"
         },
@@ -902,13 +902,13 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH",
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC",
             "color": "#E15759",
             "condition": "requested_modes.contains(\"alphafold2\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC",
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH",
             "color": "#E15759",
             "condition": "requested_modes.contains(\"alphafold2\")"
         },
@@ -926,13 +926,13 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_PRED",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH",
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC",
             "color": "#E15759",
             "condition": "requested_modes.contains(\"alphafold2\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.ALPHAFOLD2.RUN_ALPHAFOLD2_PRED",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC",
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH",
             "color": "#E15759",
             "condition": "requested_modes.contains(\"alphafold2\")"
         },
@@ -950,25 +950,25 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD3_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD3_DBS.ARIA2_UNCOMPRESS.UNZIP",
+            "B": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD3_DBS.ARIA2_UNCOMPRESS.GUNZIP",
             "color": "#EDC948",
             "condition": "requested_modes.contains(\"alphafold3\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD3_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD3_DBS.ARIA2_UNCOMPRESS.ZSTD_DECOMPRESS",
+            "B": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD3_DBS.ARIA2_UNCOMPRESS.UNTAR",
             "color": "#EDC948",
             "condition": "requested_modes.contains(\"alphafold3\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD3_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD3_DBS.ARIA2_UNCOMPRESS.UNTAR",
+            "B": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD3_DBS.ARIA2_UNCOMPRESS.UNZIP",
             "color": "#EDC948",
             "condition": "requested_modes.contains(\"alphafold3\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD3_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD3_DBS.ARIA2_UNCOMPRESS.GUNZIP",
+            "B": "NFCORE_PROTEINFOLD.PREPARE_ALPHAFOLD3_DBS.ARIA2_UNCOMPRESS.ZSTD_DECOMPRESS",
             "color": "#EDC948",
             "condition": "requested_modes.contains(\"alphafold3\")"
         },
@@ -980,13 +980,13 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.ALPHAFOLD3.RUN_ALPHAFOLD3",
-            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD3.MMCIF2PDB_TOP_RANKED",
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC",
             "color": "#EDC948",
             "condition": "requested_modes.contains(\"alphafold3\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.ALPHAFOLD3.RUN_ALPHAFOLD3",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC",
+            "B": "NFCORE_PROTEINFOLD.ALPHAFOLD3.MMCIF2PDB_TOP_RANKED",
             "color": "#EDC948",
             "condition": "requested_modes.contains(\"alphafold3\")"
         },
@@ -1028,15 +1028,15 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_COLABFOLD_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_COLABFOLD_DBS.ARIA2_UNCOMPRESS.GUNZIP"
+            "B": "NFCORE_PROTEINFOLD.PREPARE_COLABFOLD_DBS.ARIA2_UNCOMPRESS.UNZIP"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_COLABFOLD_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_COLABFOLD_DBS.ARIA2_UNCOMPRESS.UNZIP"
+            "B": "NFCORE_PROTEINFOLD.PREPARE_COLABFOLD_DBS.ARIA2_UNCOMPRESS.UNTAR"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_COLABFOLD_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_COLABFOLD_DBS.ARIA2_UNCOMPRESS.UNTAR"
+            "B": "NFCORE_PROTEINFOLD.PREPARE_COLABFOLD_DBS.ARIA2_UNCOMPRESS.GUNZIP"
         },
         {
             "A": "NFCORE_PROTEINFOLD.COLABFOLD.MULTIFASTA_TO_CSV",
@@ -1044,15 +1044,15 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.COLABFOLD.COLABFOLD_BATCH",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.GENERATE_REPORT"
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC"
         },
         {
             "A": "NFCORE_PROTEINFOLD.COLABFOLD.COLABFOLD_BATCH",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC"
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH"
         },
         {
             "A": "NFCORE_PROTEINFOLD.COLABFOLD.COLABFOLD_BATCH",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH"
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.GENERATE_REPORT"
         },
         {
             "A": "NFCORE_PROTEINFOLD.COLABFOLD.MULTIFASTA_TO_CSV",
@@ -1064,11 +1064,11 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.COLABFOLD.COLABFOLD_BATCH",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH"
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC"
         },
         {
             "A": "NFCORE_PROTEINFOLD.COLABFOLD.COLABFOLD_BATCH",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC"
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH"
         },
         {
             "A": "NFCORE_PROTEINFOLD.COLABFOLD.COLABFOLD_BATCH",
@@ -1120,15 +1120,15 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD_ALL_ATOM_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD_ALL_ATOM_DBS.ARIA2_UNCOMPRESS.GUNZIP"
+            "B": "NFCORE_PROTEINFOLD.ROSETTAFOLD_ALL_ATOM.RUN_ROSETTAFOLD_ALL_ATOM"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD_ALL_ATOM_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD_ALL_ATOM_DBS.ARIA2_UNCOMPRESS.UNZIP"
+            "B": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD_ALL_ATOM_DBS.ARIA2_UNCOMPRESS.ZSTD_DECOMPRESS"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD_ALL_ATOM_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD_ALL_ATOM_DBS.ARIA2_UNCOMPRESS.ZSTD_DECOMPRESS"
+            "B": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD_ALL_ATOM_DBS.ARIA2_UNCOMPRESS.GUNZIP"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD_ALL_ATOM_DBS.ARIA2_UNCOMPRESS.ARIA2",
@@ -1136,7 +1136,7 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD_ALL_ATOM_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.ROSETTAFOLD_ALL_ATOM.RUN_ROSETTAFOLD_ALL_ATOM"
+            "B": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD_ALL_ATOM_DBS.ARIA2_UNCOMPRESS.UNZIP"
         },
         {
             "A": "NFCORE_PROTEINFOLD.ROSETTAFOLD_ALL_ATOM.FASTA2YAML",
@@ -1190,31 +1190,31 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_HELIXFOLD3_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_HELIXFOLD3_DBS.ARIA2_UNCOMPRESS.GUNZIP",
+            "B": "NFCORE_PROTEINFOLD.PREPARE_HELIXFOLD3_DBS.ARIA2_UNCOMPRESS.UNZIP",
             "color": "#4E79A7",
             "condition": "requested_modes.contains(\"helixfold3\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_HELIXFOLD3_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_HELIXFOLD3_DBS.ARIA2_UNCOMPRESS.ZSTD_DECOMPRESS",
+            "B": "NFCORE_PROTEINFOLD.HELIXFOLD3.RUN_HELIXFOLD3",
             "color": "#4E79A7",
             "condition": "requested_modes.contains(\"helixfold3\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_HELIXFOLD3_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_HELIXFOLD3_DBS.ARIA2_UNCOMPRESS.UNTAR",
+            "B": "NFCORE_PROTEINFOLD.PREPARE_HELIXFOLD3_DBS.ARIA2_UNCOMPRESS.ZSTD_DECOMPRESS",
             "color": "#4E79A7",
             "condition": "requested_modes.contains(\"helixfold3\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_HELIXFOLD3_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.HELIXFOLD3.RUN_HELIXFOLD3",
+            "B": "NFCORE_PROTEINFOLD.PREPARE_HELIXFOLD3_DBS.ARIA2_UNCOMPRESS.GUNZIP",
             "color": "#4E79A7",
             "condition": "requested_modes.contains(\"helixfold3\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_HELIXFOLD3_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_HELIXFOLD3_DBS.ARIA2_UNCOMPRESS.UNZIP",
+            "B": "NFCORE_PROTEINFOLD.PREPARE_HELIXFOLD3_DBS.ARIA2_UNCOMPRESS.UNTAR",
             "color": "#4E79A7",
             "condition": "requested_modes.contains(\"helixfold3\")"
         },
@@ -1226,19 +1226,19 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.HELIXFOLD3.RUN_HELIXFOLD3",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.GENERATE_REPORT",
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC",
             "color": "#4E79A7",
             "condition": "requested_modes.contains(\"helixfold3\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.HELIXFOLD3.RUN_HELIXFOLD3",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC",
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH",
             "color": "#4E79A7",
             "condition": "requested_modes.contains(\"helixfold3\")"
         },
         {
             "A": "NFCORE_PROTEINFOLD.HELIXFOLD3.RUN_HELIXFOLD3",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH",
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.GENERATE_REPORT",
             "color": "#4E79A7",
             "condition": "requested_modes.contains(\"helixfold3\")"
         },
@@ -1272,11 +1272,11 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD2NA_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.ROSETTAFOLD2NA.RUN_ROSETTAFOLD2NA"
+            "B": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD2NA_DBS.ARIA2_UNCOMPRESS.GUNZIP"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD2NA_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD2NA_DBS.ARIA2_UNCOMPRESS.UNTAR"
+            "B": "NFCORE_PROTEINFOLD.ROSETTAFOLD2NA.RUN_ROSETTAFOLD2NA"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD2NA_DBS.ARIA2_UNCOMPRESS.ARIA2",
@@ -1284,7 +1284,7 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD2NA_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD2NA_DBS.ARIA2_UNCOMPRESS.GUNZIP"
+            "B": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD2NA_DBS.ARIA2_UNCOMPRESS.UNTAR"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_ROSETTAFOLD2NA_DBS.ARIA2_UNCOMPRESS.ARIA2",
@@ -1296,11 +1296,11 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.ROSETTAFOLD2NA.RUN_ROSETTAFOLD2NA",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH"
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC"
         },
         {
             "A": "NFCORE_PROTEINFOLD.ROSETTAFOLD2NA.RUN_ROSETTAFOLD2NA",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC"
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH"
         },
         {
             "A": "NFCORE_PROTEINFOLD.ROSETTAFOLD2NA.RUN_ROSETTAFOLD2NA",
@@ -1352,11 +1352,11 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_BOLTZ_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.BOLTZ.RUN_BOLTZ"
+            "B": "NFCORE_PROTEINFOLD.PREPARE_BOLTZ_DBS.ARIA2_UNCOMPRESS.UNTAR"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_BOLTZ_DBS.ARIA2_UNCOMPRESS.ARIA2",
-            "B": "NFCORE_PROTEINFOLD.PREPARE_BOLTZ_DBS.ARIA2_UNCOMPRESS.UNTAR"
+            "B": "NFCORE_PROTEINFOLD.BOLTZ.RUN_BOLTZ"
         },
         {
             "A": "NFCORE_PROTEINFOLD.PREPARE_BOLTZ_DBS.ARIA2_UNCOMPRESS.ARIA2",
@@ -1384,15 +1384,15 @@
         },
         {
             "A": "NFCORE_PROTEINFOLD.BOLTZ.RUN_BOLTZ",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.GENERATE_REPORT"
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC"
         },
         {
             "A": "NFCORE_PROTEINFOLD.BOLTZ.RUN_BOLTZ",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.MULTIQC"
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH"
         },
         {
             "A": "NFCORE_PROTEINFOLD.BOLTZ.RUN_BOLTZ",
-            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.FOLDSEEK_EASYSEARCH"
+            "B": "NFCORE_PROTEINFOLD.POST_PROCESSING.GENERATE_REPORT"
         },
         {
             "A": "NFCORE_PROTEINFOLD.POST_PROCESSING.GENERATE_REPORT",
diff --git a/assets/workflow_jsons/process_dependency_graph.json b/assets/workflow_jsons/process_dependency_graph.json
index 40bfd083..d4ac8978 100644
--- a/assets/workflow_jsons/process_dependency_graph.json
+++ b/assets/workflow_jsons/process_dependency_graph.json
@@ -30,7 +30,7 @@
                 "PREPARE_ALPHAFOLD2_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f32348e3c20>",
+                            "id": "<src.process.Process object at 0x7f181af77f80>",
                             "name": "DOWNLOAD_PDBMMCIF",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -42,7 +42,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234720440>",
+                            "id": "<src.process.Process object at 0x7f181afb08f0>",
                             "name": "ARIA2_PDB_SEQRES",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -54,7 +54,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234723260>",
+                            "id": "<src.process.Process object at 0x7f181afb35c0>",
                             "name": "COMBINE_UNIPROT",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -68,64 +68,64 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f32348e3c20>",
-                            "B": "<src.process.Process object at 0x7f3234755d90>",
+                            "A": "<src.process.Process object at 0x7f181af77f80>",
+                            "B": "<src.process.Process object at 0x7f181afea300>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348e3c20>",
-                            "B": "<src.process.Process object at 0x7f3234756bd0>",
+                            "A": "<src.process.Process object at 0x7f181af77f80>",
+                            "B": "<src.process.Process object at 0x7f181afeb200>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348e3c20>",
-                            "B": "<src.process.Process object at 0x7f3234756c60>",
+                            "A": "<src.process.Process object at 0x7f181af77f80>",
+                            "B": "<src.process.Process object at 0x7f181afeb140>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234720440>",
-                            "B": "<src.process.Process object at 0x7f3234755d90>",
+                            "A": "<src.process.Process object at 0x7f181afb08f0>",
+                            "B": "<src.process.Process object at 0x7f181afea300>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234720440>",
-                            "B": "<src.process.Process object at 0x7f3234756bd0>",
+                            "A": "<src.process.Process object at 0x7f181afb08f0>",
+                            "B": "<src.process.Process object at 0x7f181afeb200>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234720440>",
-                            "B": "<src.process.Process object at 0x7f3234756c60>",
+                            "A": "<src.process.Process object at 0x7f181afb08f0>",
+                            "B": "<src.process.Process object at 0x7f181afeb140>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234723260>",
-                            "B": "<src.process.Process object at 0x7f3234755d90>",
+                            "A": "<src.process.Process object at 0x7f181afb35c0>",
+                            "B": "<src.process.Process object at 0x7f181afea300>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234723260>",
-                            "B": "<src.process.Process object at 0x7f3234756bd0>",
+                            "A": "<src.process.Process object at 0x7f181afb35c0>",
+                            "B": "<src.process.Process object at 0x7f181afeb200>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234723260>",
-                            "B": "<src.process.Process object at 0x7f3234756c60>",
+                            "A": "<src.process.Process object at 0x7f181afb35c0>",
+                            "B": "<src.process.Process object at 0x7f181afeb140>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
@@ -135,7 +135,7 @@
                         "ARIA2_UNCOMPRESS": {
                             "nodes": [
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347224b0>",
+                                    "id": "<src.process.Process object at 0x7f181afb2990>",
                                     "name": "UNTAR",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -147,7 +147,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234722780>",
+                                    "id": "<src.process.Process object at 0x7f181afb2b70>",
                                     "name": "GUNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -159,7 +159,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234722a20>",
+                                    "id": "<src.process.Process object at 0x7f181afb2e10>",
                                     "name": "ZSTD_DECOMPRESS",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -171,7 +171,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234722d20>",
+                                    "id": "<src.process.Process object at 0x7f181afb3200>",
                                     "name": "UNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -183,7 +183,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347220f0>",
+                                    "id": "<src.process.Process object at 0x7f181afb25a0>",
                                     "name": "ARIA2",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -197,64 +197,64 @@
                             ],
                             "edges": [
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347224b0>",
-                                    "B": "<src.process.Process object at 0x7f3234723260>",
+                                    "A": "<src.process.Process object at 0x7f181afb2990>",
+                                    "B": "<src.process.Process object at 0x7f181afb35c0>",
                                     "label": "",
                                     "color": "#E15759",
                                     "condition": "requested_modes.contains(\"alphafold2\")"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f3234722780>",
-                                    "B": "<src.process.Process object at 0x7f3234723260>",
+                                    "A": "<src.process.Process object at 0x7f181afb2b70>",
+                                    "B": "<src.process.Process object at 0x7f181afb35c0>",
                                     "label": "",
                                     "color": "#E15759",
                                     "condition": "requested_modes.contains(\"alphafold2\")"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f3234722a20>",
-                                    "B": "<src.process.Process object at 0x7f3234723260>",
+                                    "A": "<src.process.Process object at 0x7f181afb2e10>",
+                                    "B": "<src.process.Process object at 0x7f181afb35c0>",
                                     "label": "",
                                     "color": "#E15759",
                                     "condition": "requested_modes.contains(\"alphafold2\")"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f3234722d20>",
-                                    "B": "<src.process.Process object at 0x7f3234723260>",
+                                    "A": "<src.process.Process object at 0x7f181afb3200>",
+                                    "B": "<src.process.Process object at 0x7f181afb35c0>",
                                     "label": "",
                                     "color": "#E15759",
                                     "condition": "requested_modes.contains(\"alphafold2\")"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347220f0>",
-                                    "B": "<src.process.Process object at 0x7f3234722a20>",
+                                    "A": "<src.process.Process object at 0x7f181afb25a0>",
+                                    "B": "<src.process.Process object at 0x7f181afb2b70>",
                                     "label": "",
                                     "color": "#E15759",
                                     "condition": "requested_modes.contains(\"alphafold2\")"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347220f0>",
-                                    "B": "<src.process.Process object at 0x7f3234722d20>",
+                                    "A": "<src.process.Process object at 0x7f181afb25a0>",
+                                    "B": "<src.process.Process object at 0x7f181afb3200>",
                                     "label": "",
                                     "color": "#E15759",
                                     "condition": "requested_modes.contains(\"alphafold2\")"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347220f0>",
-                                    "B": "<src.process.Process object at 0x7f3234722780>",
+                                    "A": "<src.process.Process object at 0x7f181afb25a0>",
+                                    "B": "<src.process.Process object at 0x7f181afb2e10>",
                                     "label": "",
                                     "color": "#E15759",
                                     "condition": "requested_modes.contains(\"alphafold2\")"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347220f0>",
-                                    "B": "<src.process.Process object at 0x7f32347224b0>",
+                                    "A": "<src.process.Process object at 0x7f181afb25a0>",
+                                    "B": "<src.process.Process object at 0x7f181afb2990>",
                                     "label": "",
                                     "color": "#E15759",
                                     "condition": "requested_modes.contains(\"alphafold2\")"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347220f0>",
-                                    "B": "<src.process.Process object at 0x7f3234723260>",
+                                    "A": "<src.process.Process object at 0x7f181afb25a0>",
+                                    "B": "<src.process.Process object at 0x7f181afb35c0>",
                                     "label": "",
                                     "color": "#E15759",
                                     "condition": "requested_modes.contains(\"alphafold2\")"
@@ -267,7 +267,7 @@
                 "ALPHAFOLD2": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f3234755d90>",
+                            "id": "<src.process.Process object at 0x7f181afea300>",
                             "name": "RUN_ALPHAFOLD2",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -279,7 +279,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234756bd0>",
+                            "id": "<src.process.Process object at 0x7f181afeb140>",
                             "name": "RUN_ALPHAFOLD2_MSA",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -291,7 +291,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234756c60>",
+                            "id": "<src.process.Process object at 0x7f181afeb200>",
                             "name": "RUN_ALPHAFOLD2_PRED",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -305,50 +305,50 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f3234755d90>",
-                            "B": "<src.process.Process object at 0x7f32348b6240>",
+                            "A": "<src.process.Process object at 0x7f181afea300>",
+                            "B": "<src.process.Process object at 0x7f181af4f350>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234755d90>",
-                            "B": "<src.process.Process object at 0x7f32348b6b70>",
+                            "A": "<src.process.Process object at 0x7f181afea300>",
+                            "B": "<src.process.Process object at 0x7f181af4ea20>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234755d90>",
-                            "B": "<src.process.Process object at 0x7f32348b4d10>",
+                            "A": "<src.process.Process object at 0x7f181afea300>",
+                            "B": "<src.process.Process object at 0x7f189a162960>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234756bd0>",
-                            "B": "<src.process.Process object at 0x7f3234756c60>",
+                            "A": "<src.process.Process object at 0x7f181afeb140>",
+                            "B": "<src.process.Process object at 0x7f181afeb200>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234756c60>",
-                            "B": "<src.process.Process object at 0x7f32348b6240>",
+                            "A": "<src.process.Process object at 0x7f181afeb200>",
+                            "B": "<src.process.Process object at 0x7f181af4f350>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234756c60>",
-                            "B": "<src.process.Process object at 0x7f32348b6b70>",
+                            "A": "<src.process.Process object at 0x7f181afeb200>",
+                            "B": "<src.process.Process object at 0x7f181af4ea20>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234756c60>",
-                            "B": "<src.process.Process object at 0x7f32348b4d10>",
+                            "A": "<src.process.Process object at 0x7f181afeb200>",
+                            "B": "<src.process.Process object at 0x7f189a162960>",
                             "label": "",
                             "color": "#E15759",
                             "condition": "requested_modes.contains(\"alphafold2\")"
@@ -359,7 +359,7 @@
                 "PREPARE_ALPHAFOLD3_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f3234791550>",
+                            "id": "<src.process.Process object at 0x7f181ae25a60>",
                             "name": "DOWNLOAD_PDBMMCIF_AF3",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -373,8 +373,8 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f3234791550>",
-                            "B": "<src.process.Process object at 0x7f32347e86e0>",
+                            "A": "<src.process.Process object at 0x7f181ae25a60>",
+                            "B": "<src.process.Process object at 0x7f181ae7cf50>",
                             "label": "",
                             "color": "#EDC948",
                             "condition": "requested_modes.contains(\"alphafold3\")"
@@ -384,7 +384,7 @@
                         "ARIA2_UNCOMPRESS": {
                             "nodes": [
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347c95e0>",
+                                    "id": "<src.process.Process object at 0x7f181ae5d910>",
                                     "name": "UNTAR",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -396,7 +396,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347c9880>",
+                                    "id": "<src.process.Process object at 0x7f181ae5dc10>",
                                     "name": "GUNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -408,7 +408,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347c9b20>",
+                                    "id": "<src.process.Process object at 0x7f181ae5de20>",
                                     "name": "ZSTD_DECOMPRESS",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -420,7 +420,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347c9e20>",
+                                    "id": "<src.process.Process object at 0x7f181ae5e0f0>",
                                     "name": "UNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -432,7 +432,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347c9250>",
+                                    "id": "<src.process.Process object at 0x7f181ae5d520>",
                                     "name": "ARIA2",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -446,29 +446,29 @@
                             ],
                             "edges": [
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c9250>",
-                                    "B": "<src.process.Process object at 0x7f32347c9e20>",
+                                    "A": "<src.process.Process object at 0x7f181ae5d520>",
+                                    "B": "<src.process.Process object at 0x7f181ae5dc10>",
                                     "label": "",
                                     "color": "#EDC948",
                                     "condition": "requested_modes.contains(\"alphafold3\")"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c9250>",
-                                    "B": "<src.process.Process object at 0x7f32347c9b20>",
+                                    "A": "<src.process.Process object at 0x7f181ae5d520>",
+                                    "B": "<src.process.Process object at 0x7f181ae5d910>",
                                     "label": "",
                                     "color": "#EDC948",
                                     "condition": "requested_modes.contains(\"alphafold3\")"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c9250>",
-                                    "B": "<src.process.Process object at 0x7f32347c95e0>",
+                                    "A": "<src.process.Process object at 0x7f181ae5d520>",
+                                    "B": "<src.process.Process object at 0x7f181ae5e0f0>",
                                     "label": "",
                                     "color": "#EDC948",
                                     "condition": "requested_modes.contains(\"alphafold3\")"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c9250>",
-                                    "B": "<src.process.Process object at 0x7f32347c9880>",
+                                    "A": "<src.process.Process object at 0x7f181ae5d520>",
+                                    "B": "<src.process.Process object at 0x7f181ae5de20>",
                                     "label": "",
                                     "color": "#EDC948",
                                     "condition": "requested_modes.contains(\"alphafold3\")"
@@ -481,7 +481,7 @@
                 "ALPHAFOLD3": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f32347e8680>",
+                            "id": "<src.process.Process object at 0x7f181ae7ce90>",
                             "name": "FASTA_TO_ALPHAFOLD3_JSON",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -493,7 +493,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32347e86e0>",
+                            "id": "<src.process.Process object at 0x7f181ae7cf50>",
                             "name": "RUN_ALPHAFOLD3",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -505,7 +505,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32347e87a0>",
+                            "id": "<src.process.Process object at 0x7f181ae5e150>",
                             "name": "MMCIF2PDB_MODELS",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -517,7 +517,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32347e8860>",
+                            "id": "<src.process.Process object at 0x7f181ae5d880>",
                             "name": "MMCIF2PDB_TOP_RANKED",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -531,50 +531,50 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f32347e8680>",
-                            "B": "<src.process.Process object at 0x7f32347e86e0>",
+                            "A": "<src.process.Process object at 0x7f181ae7ce90>",
+                            "B": "<src.process.Process object at 0x7f181ae7cf50>",
                             "label": "",
                             "color": "#EDC948",
                             "condition": "requested_modes.contains(\"alphafold3\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e86e0>",
-                            "B": "<src.process.Process object at 0x7f32347e8860>",
+                            "A": "<src.process.Process object at 0x7f181ae7cf50>",
+                            "B": "<src.process.Process object at 0x7f181af4f350>",
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                             "color": "#EDC948",
                             "condition": "requested_modes.contains(\"alphafold3\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e86e0>",
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+                            "B": "<src.process.Process object at 0x7f181ae5d880>",
                             "label": "",
                             "color": "#EDC948",
                             "condition": "requested_modes.contains(\"alphafold3\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e86e0>",
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+                            "B": "<src.process.Process object at 0x7f189a162960>",
                             "label": "",
                             "color": "#EDC948",
                             "condition": "requested_modes.contains(\"alphafold3\")"
                         },
                         {
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-                            "B": "<src.process.Process object at 0x7f32347e87a0>",
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+                            "B": "<src.process.Process object at 0x7f181ae5e150>",
                             "label": "",
                             "color": "#EDC948",
                             "condition": "requested_modes.contains(\"alphafold3\")"
                         },
                         {
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-                            "B": "<src.process.Process object at 0x7f32348b4d10>",
+                            "A": "<src.process.Process object at 0x7f181ae5e150>",
+                            "B": "<src.process.Process object at 0x7f189a162960>",
                             "label": "",
                             "color": "#EDC948",
                             "condition": "requested_modes.contains(\"alphafold3\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e8860>",
-                            "B": "<src.process.Process object at 0x7f32348b6240>",
+                            "A": "<src.process.Process object at 0x7f181ae5d880>",
+                            "B": "<src.process.Process object at 0x7f181af4ea20>",
                             "label": "",
                             "color": "#EDC948",
                             "condition": "requested_modes.contains(\"alphafold3\")"
@@ -585,7 +585,7 @@
                 "PREPARE_COLABFOLD_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f32345c8b60>",
+                            "id": "<src.process.Process object at 0x7f181ac54e00>",
                             "name": "MMSEQS_CREATEINDEX_COLABFOLDDB",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -597,7 +597,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345c9070>",
+                            "id": "<src.process.Process object at 0x7f181ac552e0>",
                             "name": "MMSEQS_CREATEINDEX_UNIPROT30",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -611,13 +611,13 @@
                     ],
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                         {
-                            "A": "<src.process.Process object at 0x7f32345c8b60>",
-                            "B": "<src.process.Process object at 0x7f32345caa80>",
+                            "A": "<src.process.Process object at 0x7f181ac54e00>",
+                            "B": "<src.process.Process object at 0x7f181ac56e40>",
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-                            "B": "<src.process.Process object at 0x7f32345caa80>",
+                            "A": "<src.process.Process object at 0x7f181ac552e0>",
+                            "B": "<src.process.Process object at 0x7f181ac56e40>",
                             "label": ""
                         }
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@@ -625,7 +625,7 @@
                         "ARIA2_UNCOMPRESS": {
                             "nodes": [
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345b07d0>",
+                                    "id": "<src.process.Process object at 0x7f181ac3ca10>",
                                     "name": "UNTAR",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -637,7 +637,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345b0aa0>",
+                                    "id": "<src.process.Process object at 0x7f181ac3cbc0>",
                                     "name": "GUNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -649,7 +649,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345b0d70>",
+                                    "id": "<src.process.Process object at 0x7f181ac3ce30>",
                                     "name": "ZSTD_DECOMPRESS",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -661,7 +661,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345b1040>",
+                                    "id": "<src.process.Process object at 0x7f181ac3d250>",
                                     "name": "UNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -673,7 +673,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345b0440>",
+                                    "id": "<src.process.Process object at 0x7f181ac3c4d0>",
                                     "name": "ARIA2",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -687,23 +687,23 @@
                             ],
                             "edges": [
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345b0440>",
-                                    "B": "<src.process.Process object at 0x7f32345b0d70>",
+                                    "A": "<src.process.Process object at 0x7f181ac3c4d0>",
+                                    "B": "<src.process.Process object at 0x7f181ac3ce30>",
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                                 },
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-                                    "B": "<src.process.Process object at 0x7f32345b0aa0>",
+                                    "A": "<src.process.Process object at 0x7f181ac3c4d0>",
+                                    "B": "<src.process.Process object at 0x7f181ac3d250>",
                                     "label": ""
                                 },
                                 {
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-                                    "B": "<src.process.Process object at 0x7f32345b1040>",
+                                    "A": "<src.process.Process object at 0x7f181ac3c4d0>",
+                                    "B": "<src.process.Process object at 0x7f181ac3ca10>",
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                                 },
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-                                    "B": "<src.process.Process object at 0x7f32345b07d0>",
+                                    "A": "<src.process.Process object at 0x7f181ac3c4d0>",
+                                    "B": "<src.process.Process object at 0x7f181ac3cbc0>",
                                     "label": ""
                                 }
                             ],
@@ -714,7 +714,7 @@
                 "COLABFOLD": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f3234817380>",
+                            "id": "<src.process.Process object at 0x7f181aea77a0>",
                             "name": "MULTIFASTA_TO_CSV",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -726,7 +726,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348174a0>",
+                            "id": "<src.process.Process object at 0x7f181aea7890>",
                             "name": "COLABFOLD_BATCH",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -738,7 +738,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234817bc0>",
+                            "id": "<src.process.Process object at 0x7f181aea7fb0>",
                             "name": "MULTIFASTA_TO_CSV",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -750,7 +750,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348cf6e0>",
+                            "id": "<src.process.Process object at 0x7f181aec4140>",
                             "name": "MMSEQS_COLABFOLDSEARCH",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -762,7 +762,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234817bf0>",
+                            "id": "<src.process.Process object at 0x7f181aec4110>",
                             "name": "COLABFOLD_BATCH",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -776,48 +776,48 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f3234817380>",
-                            "B": "<src.process.Process object at 0x7f32348174a0>",
+                            "A": "<src.process.Process object at 0x7f181aea77a0>",
+                            "B": "<src.process.Process object at 0x7f181aea7890>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348174a0>",
-                            "B": "<src.process.Process object at 0x7f32348b4d10>",
+                            "A": "<src.process.Process object at 0x7f181aea7890>",
+                            "B": "<src.process.Process object at 0x7f181af4f350>",
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                         },
                         {
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-                            "B": "<src.process.Process object at 0x7f32348b6b70>",
+                            "A": "<src.process.Process object at 0x7f181aea7890>",
+                            "B": "<src.process.Process object at 0x7f181af4ea20>",
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                         },
                         {
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-                            "B": "<src.process.Process object at 0x7f32348b6240>",
+                            "A": "<src.process.Process object at 0x7f181aea7890>",
+                            "B": "<src.process.Process object at 0x7f189a162960>",
                             "label": ""
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                         {
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-                            "B": "<src.process.Process object at 0x7f32348cf6e0>",
+                            "A": "<src.process.Process object at 0x7f181aea7fb0>",
+                            "B": "<src.process.Process object at 0x7f181aec4140>",
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                         {
-                            "A": "<src.process.Process object at 0x7f32348cf6e0>",
-                            "B": "<src.process.Process object at 0x7f3234817bf0>",
+                            "A": "<src.process.Process object at 0x7f181aec4140>",
+                            "B": "<src.process.Process object at 0x7f181aec4110>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234817bf0>",
-                            "B": "<src.process.Process object at 0x7f32348b6240>",
+                            "A": "<src.process.Process object at 0x7f181aec4110>",
+                            "B": "<src.process.Process object at 0x7f181af4f350>",
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                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234817bf0>",
-                            "B": "<src.process.Process object at 0x7f32348b6b70>",
+                            "A": "<src.process.Process object at 0x7f181aec4110>",
+                            "B": "<src.process.Process object at 0x7f181af4ea20>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234817bf0>",
-                            "B": "<src.process.Process object at 0x7f32348b4d10>",
+                            "A": "<src.process.Process object at 0x7f181aec4110>",
+                            "B": "<src.process.Process object at 0x7f189a162960>",
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                         }
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@@ -826,7 +826,7 @@
                 "PREPARE_ESMFOLD_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f323463ac90>",
+                            "id": "<src.process.Process object at 0x7f181aec7020>",
                             "name": "ARIA2_ESMFOLD_3B_V1",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -838,7 +838,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f323463adb0>",
+                            "id": "<src.process.Process object at 0x7f181aec7050>",
                             "name": "ARIA2_ESM2_T36_3B_UR50D",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -850,7 +850,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f323463aea0>",
+                            "id": "<src.process.Process object at 0x7f181aec71a0>",
                             "name": "ARIA2_ESM2_T36_3B_UR50D_CONTACT_REGRESSION",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -864,18 +864,18 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f323463ac90>",
-                            "B": "<src.process.Process object at 0x7f32348f99d0>",
+                            "A": "<src.process.Process object at 0x7f181aec7020>",
+                            "B": "<src.process.Process object at 0x7f181aec7fe0>",
                             "label": ""
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-                            "B": "<src.process.Process object at 0x7f32348f99d0>",
+                            "A": "<src.process.Process object at 0x7f181aec7050>",
+                            "B": "<src.process.Process object at 0x7f181aec7fe0>",
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                         {
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-                            "B": "<src.process.Process object at 0x7f32348f99d0>",
+                            "A": "<src.process.Process object at 0x7f181aec71a0>",
+                            "B": "<src.process.Process object at 0x7f181aec7fe0>",
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                         }
                     ],
@@ -884,7 +884,7 @@
                 "ESMFOLD": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f323463bcb0>",
+                            "id": "<src.process.Process object at 0x7f181aec7f80>",
                             "name": "MULTIFASTA_TO_SINGLEFASTA",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -896,7 +896,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348f99d0>",
+                            "id": "<src.process.Process object at 0x7f181aec7fe0>",
                             "name": "RUN_ESMFOLD",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -910,13 +910,13 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f323463bcb0>",
-                            "B": "<src.process.Process object at 0x7f32348f99d0>",
+                            "A": "<src.process.Process object at 0x7f181aec7f80>",
+                            "B": "<src.process.Process object at 0x7f181aec7fe0>",
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                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348f99d0>",
-                            "B": "<src.process.Process object at 0x7f32348b6b70>",
+                            "A": "<src.process.Process object at 0x7f181aec7fe0>",
+                            "B": "<src.process.Process object at 0x7f181af4f350>",
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                         }
                     ],
@@ -929,7 +929,7 @@
                         "ARIA2_UNCOMPRESS": {
                             "nodes": [
                                 {
-                                    "id": "<src.process.Process object at 0x7f323466f230>",
+                                    "id": "<src.process.Process object at 0x7f181aef7470>",
                                     "name": "UNTAR",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -941,7 +941,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f323466ee10>",
+                                    "id": "<src.process.Process object at 0x7f181aef7650>",
                                     "name": "GUNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -953,7 +953,7 @@
                                     }
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                                 {
-                                    "id": "<src.process.Process object at 0x7f323466d4c0>",
+                                    "id": "<src.process.Process object at 0x7f181aef78f0>",
                                     "name": "ZSTD_DECOMPRESS",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -965,7 +965,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f323466f350>",
+                                    "id": "<src.process.Process object at 0x7f181aef6e70>",
                                     "name": "UNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -977,7 +977,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f323466ee70>",
+                                    "id": "<src.process.Process object at 0x7f181aef70e0>",
                                     "name": "ARIA2",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -991,56 +991,56 @@
                             ],
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-                                    "A": "<src.process.Process object at 0x7f323466f230>",
-                                    "B": "<src.process.Process object at 0x7f3234670dd0>",
+                                    "A": "<src.process.Process object at 0x7f181aef7470>",
+                                    "B": "<src.process.Process object at 0x7f181ad0cf20>",
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                                     "color": "#FF9DA7",
                                     "condition": "!(source_url.toString().endsWith('.pkl.gz')) && source_url.toString().endsWith('.tar') $OR$                source_url.toString().endsWith('.tar.gz') $OR$                source_url.toString().endsWith('.tar.zst')$OR$                source_url.toString().endsWith('.tgz')"
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                                     "condition": "!(source_url.toString().endsWith('.pkl.gz')) && !(source_url.toString().endsWith('.tar') $OR$                source_url.toString().endsWith('.tar.gz') $OR$                source_url.toString().endsWith('.tar.zst')$OR$                source_url.toString().endsWith('.tgz')) && source_url.toString().endsWith('.gz')"
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-                                    "B": "<src.process.Process object at 0x7f3234670dd0>",
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+                                    "B": "<src.process.Process object at 0x7f181ad0cf20>",
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                                     "color": "#76B7B2",
                                     "condition": "!(source_url.toString().endsWith('.pkl.gz')) && !(source_url.toString().endsWith('.tar') $OR$                source_url.toString().endsWith('.tar.gz') $OR$                source_url.toString().endsWith('.tar.zst')$OR$                source_url.toString().endsWith('.tgz')) && !(source_url.toString().endsWith('.gz')) && source_url.toString().endsWith('.zst')"
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                                 {
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-                                    "B": "<src.process.Process object at 0x7f3234670dd0>",
+                                    "A": "<src.process.Process object at 0x7f181aef6e70>",
+                                    "B": "<src.process.Process object at 0x7f181ad0cf20>",
                                     "label": "",
                                     "color": "#B07AA1",
                                     "condition": "!(source_url.toString().endsWith('.pkl.gz')) && !(source_url.toString().endsWith('.tar') $OR$                source_url.toString().endsWith('.tar.gz') $OR$                source_url.toString().endsWith('.tar.zst')$OR$                source_url.toString().endsWith('.tgz')) && !(source_url.toString().endsWith('.gz')) && !(source_url.toString().endsWith('.zst')) && source_url.toString().endsWith('.zip')"
                                 },
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-                                    "B": "<src.process.Process object at 0x7f323466ee10>",
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-                                    "B": "<src.process.Process object at 0x7f323466f350>",
+                                    "A": "<src.process.Process object at 0x7f181aef70e0>",
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+                                    "A": "<src.process.Process object at 0x7f181aef70e0>",
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-                                    "B": "<src.process.Process object at 0x7f3234670dd0>",
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+                                    "B": "<src.process.Process object at 0x7f181aef6e70>",
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                             ],
@@ -1051,7 +1051,7 @@
                 "ROSETTAFOLD_ALL_ATOM": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f3234670d40>",
+                            "id": "<src.process.Process object at 0x7f181ad0cf80>",
                             "name": "FASTA2YAML",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1063,7 +1063,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234670dd0>",
+                            "id": "<src.process.Process object at 0x7f181ad0cf20>",
                             "name": "RUN_ROSETTAFOLD_ALL_ATOM",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1077,13 +1077,13 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f3234670d40>",
-                            "B": "<src.process.Process object at 0x7f3234670dd0>",
+                            "A": "<src.process.Process object at 0x7f181ad0cf80>",
+                            "B": "<src.process.Process object at 0x7f181ad0cf20>",
                             "label": ""
                         },
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-                            "B": "<src.process.Process object at 0x7f32348b6b70>",
+                            "A": "<src.process.Process object at 0x7f181ad0cf20>",
+                            "B": "<src.process.Process object at 0x7f181af4f350>",
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                         }
                     ],
@@ -1092,7 +1092,7 @@
                 "PREPARE_HELIXFOLD3_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f32346e1010>",
+                            "id": "<src.process.Process object at 0x7f181ad712e0>",
                             "name": "DOWNLOAD_PDBMMCIF",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1104,7 +1104,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32346e33e0>",
+                            "id": "<src.process.Process object at 0x7f181ad88050>",
                             "name": "ARIA2_PDB_SEQRES",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1116,7 +1116,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234700a10>",
+                            "id": "<src.process.Process object at 0x7f181ad733e0>",
                             "name": "COMBINE_UNIPROT",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1130,22 +1130,22 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f32346e1010>",
-                            "B": "<src.process.Process object at 0x7f32345275c0>",
+                            "A": "<src.process.Process object at 0x7f181ad712e0>",
+                            "B": "<src.process.Process object at 0x7f181adb3620>",
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                             "color": "#4E79A7",
                             "condition": "requested_modes.contains(\"helixfold3\")"
                         },
                         {
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-                            "B": "<src.process.Process object at 0x7f32345275c0>",
+                            "A": "<src.process.Process object at 0x7f181ad88050>",
+                            "B": "<src.process.Process object at 0x7f181adb3620>",
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                             "color": "#4E79A7",
                             "condition": "requested_modes.contains(\"helixfold3\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234700a10>",
-                            "B": "<src.process.Process object at 0x7f32345275c0>",
+                            "A": "<src.process.Process object at 0x7f181ad733e0>",
+                            "B": "<src.process.Process object at 0x7f181adb3620>",
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                             "color": "#4E79A7",
                             "condition": "requested_modes.contains(\"helixfold3\")"
@@ -1155,7 +1155,7 @@
                         "ARIA2_UNCOMPRESS": {
                             "nodes": [
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234703680>",
+                                    "id": "<src.process.Process object at 0x7f181ad8ba70>",
                                     "name": "UNTAR",
                                     "shape": "ellipse",
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@@ -1167,7 +1167,7 @@
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                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234703920>",
+                                    "id": "<src.process.Process object at 0x7f181ad8bce0>",
                                     "name": "GUNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -1179,7 +1179,7 @@
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                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234703bc0>",
+                                    "id": "<src.process.Process object at 0x7f181ad8bf80>",
                                     "name": "ZSTD_DECOMPRESS",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -1191,7 +1191,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234703ec0>",
+                                    "id": "<src.process.Process object at 0x7f181adb02f0>",
                                     "name": "UNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -1203,7 +1203,7 @@
                                     }
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347032c0>",
+                                    "id": "<src.process.Process object at 0x7f181ad8b680>",
                                     "name": "ARIA2",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -1217,64 +1217,64 @@
                             ],
                             "edges": [
                                 {
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-                                    "B": "<src.process.Process object at 0x7f32345275c0>",
+                                    "A": "<src.process.Process object at 0x7f181ad8ba70>",
+                                    "B": "<src.process.Process object at 0x7f181adb3620>",
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                                     "color": "#4E79A7",
                                     "condition": "requested_modes.contains(\"helixfold3\")"
                                 },
                                 {
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-                                    "B": "<src.process.Process object at 0x7f32345275c0>",
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                                 },
                                 {
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-                                    "B": "<src.process.Process object at 0x7f32345275c0>",
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                                     "color": "#4E79A7",
                                     "condition": "requested_modes.contains(\"helixfold3\")"
                                 },
                                 {
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-                                    "B": "<src.process.Process object at 0x7f32345275c0>",
+                                    "A": "<src.process.Process object at 0x7f181adb02f0>",
+                                    "B": "<src.process.Process object at 0x7f181adb3620>",
                                     "label": "",
                                     "color": "#4E79A7",
                                     "condition": "requested_modes.contains(\"helixfold3\")"
                                 },
                                 {
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-                                    "B": "<src.process.Process object at 0x7f3234703920>",
+                                    "A": "<src.process.Process object at 0x7f181ad8b680>",
+                                    "B": "<src.process.Process object at 0x7f181adb02f0>",
                                     "label": "",
                                     "color": "#4E79A7",
                                     "condition": "requested_modes.contains(\"helixfold3\")"
                                 },
                                 {
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-                                    "B": "<src.process.Process object at 0x7f3234703bc0>",
+                                    "A": "<src.process.Process object at 0x7f181ad8b680>",
+                                    "B": "<src.process.Process object at 0x7f181adb3620>",
                                     "label": "",
                                     "color": "#4E79A7",
                                     "condition": "requested_modes.contains(\"helixfold3\")"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347032c0>",
-                                    "B": "<src.process.Process object at 0x7f3234703680>",
+                                    "A": "<src.process.Process object at 0x7f181ad8b680>",
+                                    "B": "<src.process.Process object at 0x7f181ad8bf80>",
                                     "label": "",
                                     "color": "#4E79A7",
                                     "condition": "requested_modes.contains(\"helixfold3\")"
                                 },
                                 {
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-                                    "B": "<src.process.Process object at 0x7f32345275c0>",
+                                    "A": "<src.process.Process object at 0x7f181ad8b680>",
+                                    "B": "<src.process.Process object at 0x7f181ad8bce0>",
                                     "label": "",
                                     "color": "#4E79A7",
                                     "condition": "requested_modes.contains(\"helixfold3\")"
                                 },
                                 {
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-                                    "B": "<src.process.Process object at 0x7f3234703ec0>",
+                                    "A": "<src.process.Process object at 0x7f181ad8b680>",
+                                    "B": "<src.process.Process object at 0x7f181ad8ba70>",
                                     "label": "",
                                     "color": "#4E79A7",
                                     "condition": "requested_modes.contains(\"helixfold3\")"
@@ -1287,7 +1287,7 @@
                 "HELIXFOLD3": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f3234527500>",
+                            "id": "<src.process.Process object at 0x7f181adb1a30>",
                             "name": "FASTA2JSON",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1299,7 +1299,7 @@
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                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345275c0>",
+                            "id": "<src.process.Process object at 0x7f181adb3620>",
                             "name": "RUN_HELIXFOLD3",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1313,29 +1313,29 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f3234527500>",
-                            "B": "<src.process.Process object at 0x7f32345275c0>",
+                            "A": "<src.process.Process object at 0x7f181adb1a30>",
+                            "B": "<src.process.Process object at 0x7f181adb3620>",
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                             "color": "#4E79A7",
                             "condition": "requested_modes.contains(\"helixfold3\")"
                         },
                         {
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-                            "B": "<src.process.Process object at 0x7f32348b4d10>",
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                             "condition": "requested_modes.contains(\"helixfold3\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345275c0>",
-                            "B": "<src.process.Process object at 0x7f32348b6b70>",
+                            "A": "<src.process.Process object at 0x7f181adb3620>",
+                            "B": "<src.process.Process object at 0x7f181af4ea20>",
                             "label": "",
                             "color": "#4E79A7",
                             "condition": "requested_modes.contains(\"helixfold3\")"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345275c0>",
-                            "B": "<src.process.Process object at 0x7f32348b6240>",
+                            "A": "<src.process.Process object at 0x7f181adb3620>",
+                            "B": "<src.process.Process object at 0x7f189a162960>",
                             "label": "",
                             "color": "#4E79A7",
                             "condition": "requested_modes.contains(\"helixfold3\")"
@@ -1346,7 +1346,7 @@
                 "PREPARE_ROSETTAFOLD2NA_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f32345659a0>",
+                            "id": "<src.process.Process object at 0x7f181adeda90>",
                             "name": "DOWNLOAD_RNA_DATABASES",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1360,8 +1360,8 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f32345659a0>",
-                            "B": "<src.process.Process object at 0x7f32345807a0>",
+                            "A": "<src.process.Process object at 0x7f181adeda90>",
+                            "B": "<src.process.Process object at 0x7f181ac04b30>",
                             "label": ""
                         }
                     ],
@@ -1369,7 +1369,7 @@
                         "ARIA2_UNCOMPRESS": {
                             "nodes": [
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345255b0>",
+                                    "id": "<src.process.Process object at 0x7f181addb860>",
                                     "name": "UNTAR",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -1381,7 +1381,7 @@
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                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345661e0>",
+                                    "id": "<src.process.Process object at 0x7f181adee810>",
                                     "name": "GUNZIP",
                                     "shape": "ellipse",
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@@ -1393,7 +1393,7 @@
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                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234564860>",
+                                    "id": "<src.process.Process object at 0x7f181adec9b0>",
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                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -1405,7 +1405,7 @@
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                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234566750>",
+                                    "id": "<src.process.Process object at 0x7f181adeeae0>",
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@@ -1417,7 +1417,7 @@
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                                 {
-                                    "id": "<src.process.Process object at 0x7f32345662a0>",
+                                    "id": "<src.process.Process object at 0x7f181adee4e0>",
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@@ -1431,56 +1431,56 @@
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-                                    "B": "<src.process.Process object at 0x7f32345807a0>",
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                                     "condition": "!(source_url.toString().endsWith('.pkl.gz')) && !(source_url.toString().endsWith('.tar') $OR$                source_url.toString().endsWith('.tar.gz') $OR$                source_url.toString().endsWith('.tar.zst')$OR$                source_url.toString().endsWith('.tgz')) && !(source_url.toString().endsWith('.gz')) && !(source_url.toString().endsWith('.zst')) && source_url.toString().endsWith('.zip')"
                                 },
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-                                    "B": "<src.process.Process object at 0x7f32345807a0>",
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-                                    "B": "<src.process.Process object at 0x7f32345255b0>",
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-                                    "B": "<src.process.Process object at 0x7f3234566750>",
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                                 {
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-                                    "B": "<src.process.Process object at 0x7f32345661e0>",
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-                                    "B": "<src.process.Process object at 0x7f3234564860>",
+                                    "A": "<src.process.Process object at 0x7f181adee4e0>",
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@@ -1491,7 +1491,7 @@
                 "ROSETTAFOLD2NA": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f3234580680>",
+                            "id": "<src.process.Process object at 0x7f181ac04a10>",
                             "name": "ROSETTAFOLD2NA_FASTA",
                             "shape": "ellipse",
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@@ -1503,7 +1503,7 @@
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                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345807a0>",
+                            "id": "<src.process.Process object at 0x7f181ac04b30>",
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@@ -1517,23 +1517,23 @@
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@@ -1542,7 +1542,7 @@
                 "PREPARE_BOLTZ_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f323458c410>",
+                            "id": "<src.process.Process object at 0x7f181ac184a0>",
                             "name": "ARIA2_BOLTZ_CCD",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1554,7 +1554,7 @@
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                         },
                         {
-                            "id": "<src.process.Process object at 0x7f323458c470>",
+                            "id": "<src.process.Process object at 0x7f181ac18590>",
                             "name": "ARIA2_BOLTZ_MODEL",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1566,7 +1566,7 @@
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                         },
                         {
-                            "id": "<src.process.Process object at 0x7f323458c5c0>",
+                            "id": "<src.process.Process object at 0x7f181ac18680>",
                             "name": "ARIA2_BOLTZ2_AFF",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1578,7 +1578,7 @@
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                         },
                         {
-                            "id": "<src.process.Process object at 0x7f323458c6e0>",
+                            "id": "<src.process.Process object at 0x7f181ac18770>",
                             "name": "ARIA2_BOLTZ2_CONF",
                             "shape": "ellipse",
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@@ -1592,23 +1592,23 @@
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+                            "B": "<src.process.Process object at 0x7f181ac3ecc0>",
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@@ -1616,7 +1616,7 @@
                         "ARIA2_UNCOMPRESS": {
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                                 {
-                                    "id": "<src.process.Process object at 0x7f323458d3a0>",
+                                    "id": "<src.process.Process object at 0x7f181ac19490>",
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@@ -1628,7 +1628,7 @@
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@@ -1640,7 +1640,7 @@
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+                                    "id": "<src.process.Process object at 0x7f181ac19a00>",
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@@ -1652,7 +1652,7 @@
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@@ -1664,7 +1664,7 @@
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@@ -1678,56 +1678,56 @@
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                                 {
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-                                    "B": "<src.process.Process object at 0x7f32345c8500>",
+                                    "A": "<src.process.Process object at 0x7f181ac19490>",
+                                    "B": "<src.process.Process object at 0x7f181ac3ecc0>",
                                     "label": "",
                                     "color": "#FF9DA7",
                                     "condition": "!(source_url.toString().endsWith('.pkl.gz')) && source_url.toString().endsWith('.tar') $OR$                source_url.toString().endsWith('.tar.gz') $OR$                source_url.toString().endsWith('.tar.zst')$OR$                source_url.toString().endsWith('.tgz')"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d670>",
-                                    "B": "<src.process.Process object at 0x7f32345c8500>",
+                                    "A": "<src.process.Process object at 0x7f181ac19730>",
+                                    "B": "<src.process.Process object at 0x7f181ac3ecc0>",
                                     "label": "",
                                     "color": "#F28E2B",
                                     "condition": "!(source_url.toString().endsWith('.pkl.gz')) && !(source_url.toString().endsWith('.tar') $OR$                source_url.toString().endsWith('.tar.gz') $OR$                source_url.toString().endsWith('.tar.zst')$OR$                source_url.toString().endsWith('.tgz')) && source_url.toString().endsWith('.gz')"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d8e0>",
-                                    "B": "<src.process.Process object at 0x7f32345c8500>",
+                                    "A": "<src.process.Process object at 0x7f181ac19a00>",
+                                    "B": "<src.process.Process object at 0x7f181ac3ecc0>",
                                     "label": "",
                                     "color": "#76B7B2",
                                     "condition": "!(source_url.toString().endsWith('.pkl.gz')) && !(source_url.toString().endsWith('.tar') $OR$                source_url.toString().endsWith('.tar.gz') $OR$                source_url.toString().endsWith('.tar.zst')$OR$                source_url.toString().endsWith('.tgz')) && !(source_url.toString().endsWith('.gz')) && source_url.toString().endsWith('.zst')"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458dc40>",
-                                    "B": "<src.process.Process object at 0x7f32345c8500>",
+                                    "A": "<src.process.Process object at 0x7f181ac19cd0>",
+                                    "B": "<src.process.Process object at 0x7f181ac3ecc0>",
                                     "label": "",
                                     "color": "#B07AA1",
                                     "condition": "!(source_url.toString().endsWith('.pkl.gz')) && !(source_url.toString().endsWith('.tar') $OR$                source_url.toString().endsWith('.tar.gz') $OR$                source_url.toString().endsWith('.tar.zst')$OR$                source_url.toString().endsWith('.tgz')) && !(source_url.toString().endsWith('.gz')) && !(source_url.toString().endsWith('.zst')) && source_url.toString().endsWith('.zip')"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d010>",
-                                    "B": "<src.process.Process object at 0x7f323458dc40>",
+                                    "A": "<src.process.Process object at 0x7f181ac19100>",
+                                    "B": "<src.process.Process object at 0x7f181ac19cd0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d010>",
-                                    "B": "<src.process.Process object at 0x7f32345c8500>",
+                                    "A": "<src.process.Process object at 0x7f181ac19100>",
+                                    "B": "<src.process.Process object at 0x7f181ac19490>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d010>",
-                                    "B": "<src.process.Process object at 0x7f323458d3a0>",
+                                    "A": "<src.process.Process object at 0x7f181ac19100>",
+                                    "B": "<src.process.Process object at 0x7f181ac3ecc0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d010>",
-                                    "B": "<src.process.Process object at 0x7f323458d8e0>",
+                                    "A": "<src.process.Process object at 0x7f181ac19100>",
+                                    "B": "<src.process.Process object at 0x7f181ac19a00>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d010>",
-                                    "B": "<src.process.Process object at 0x7f323458d670>",
+                                    "A": "<src.process.Process object at 0x7f181ac19100>",
+                                    "B": "<src.process.Process object at 0x7f181ac19730>",
                                     "label": ""
                                 }
                             ],
@@ -1738,7 +1738,7 @@
                 "BOLTZ": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f32345ca9c0>",
+                            "id": "<src.process.Process object at 0x7f181ac56d80>",
                             "name": "MULTIFASTA_TO_CSV",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1750,7 +1750,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345caa80>",
+                            "id": "<src.process.Process object at 0x7f181ac56e40>",
                             "name": "MMSEQS_COLABFOLDSEARCH",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1762,7 +1762,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345cabd0>",
+                            "id": "<src.process.Process object at 0x7f181ac56f90>",
                             "name": "SPLIT_MSA",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1774,7 +1774,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345c90a0>",
+                            "id": "<src.process.Process object at 0x7f181adece00>",
                             "name": "BOLTZ_FASTA",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1786,7 +1786,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345c8500>",
+                            "id": "<src.process.Process object at 0x7f181ac3ecc0>",
                             "name": "RUN_BOLTZ",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1800,38 +1800,38 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f32345ca9c0>",
-                            "B": "<src.process.Process object at 0x7f32345caa80>",
+                            "A": "<src.process.Process object at 0x7f181ac56d80>",
+                            "B": "<src.process.Process object at 0x7f181ac56e40>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345caa80>",
-                            "B": "<src.process.Process object at 0x7f32345cabd0>",
+                            "A": "<src.process.Process object at 0x7f181ac56e40>",
+                            "B": "<src.process.Process object at 0x7f181ac56f90>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345cabd0>",
-                            "B": "<src.process.Process object at 0x7f32345c90a0>",
+                            "A": "<src.process.Process object at 0x7f181ac56f90>",
+                            "B": "<src.process.Process object at 0x7f181adece00>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c90a0>",
-                            "B": "<src.process.Process object at 0x7f32345c8500>",
+                            "A": "<src.process.Process object at 0x7f181adece00>",
+                            "B": "<src.process.Process object at 0x7f181ac3ecc0>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c8500>",
-                            "B": "<src.process.Process object at 0x7f32348b4d10>",
+                            "A": "<src.process.Process object at 0x7f181ac3ecc0>",
+                            "B": "<src.process.Process object at 0x7f181af4f350>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c8500>",
-                            "B": "<src.process.Process object at 0x7f32348b6b70>",
+                            "A": "<src.process.Process object at 0x7f181ac3ecc0>",
+                            "B": "<src.process.Process object at 0x7f181af4ea20>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c8500>",
-                            "B": "<src.process.Process object at 0x7f32348b6240>",
+                            "A": "<src.process.Process object at 0x7f181ac3ecc0>",
+                            "B": "<src.process.Process object at 0x7f189a162960>",
                             "label": ""
                         }
                     ],
@@ -1840,7 +1840,7 @@
                 "POST_PROCESSING": {
                     "nodes": [
                         {
-                            "id": "<src.process.Process object at 0x7f32348b55e0>",
+                            "id": "<src.process.Process object at 0x7f181af4dd60>",
                             "name": "COMPARE_STRUCTURES",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1852,7 +1852,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348b4d10>",
+                            "id": "<src.process.Process object at 0x7f189a162960>",
                             "name": "GENERATE_REPORT",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1864,7 +1864,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348b6240>",
+                            "id": "<src.process.Process object at 0x7f181af4ea20>",
                             "name": "FOLDSEEK_EASYSEARCH",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1876,7 +1876,7 @@
                             }
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348b6b70>",
+                            "id": "<src.process.Process object at 0x7f181af4f350>",
                             "name": "MULTIQC",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -1890,8 +1890,8 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f32348b4d10>",
-                            "B": "<src.process.Process object at 0x7f32348b55e0>",
+                            "A": "<src.process.Process object at 0x7f189a162960>",
+                            "B": "<src.process.Process object at 0x7f181af4dd60>",
                             "label": ""
                         }
                     ],
diff --git a/assets/workflow_jsons/specification_graph.json b/assets/workflow_jsons/specification_graph.json
index 43e840ec..c213242a 100644
--- a/assets/workflow_jsons/specification_graph.json
+++ b/assets/workflow_jsons/specification_graph.json
@@ -1,7 +1,7 @@
 {
     "nodes": [
         {
-            "id": "<src.operation.Operation object at 0x7f32345e3710>",
+            "id": "<src.operation.Operation object at 0x7f181ac6f9e0>",
             "name": "",
             "shape": "point",
             "xlabel": "params.version",
@@ -9,7 +9,7 @@
             "artificial": false
         },
         {
-            "id": "<src.operation.Operation object at 0x7f32345e38c0>",
+            "id": "<src.operation.Operation object at 0x7f181ac6fb60>",
             "name": "",
             "shape": "point",
             "xlabel": "params.validate_params",
@@ -17,7 +17,7 @@
             "artificial": false
         },
         {
-            "id": "<src.operation.Operation object at 0x7f32345e39e0>",
+            "id": "<src.operation.Operation object at 0x7f181ac6fc80>",
             "name": "",
             "shape": "point",
             "xlabel": "params.monochrome_logs",
@@ -25,7 +25,7 @@
             "artificial": false
         },
         {
-            "id": "<src.operation.Operation object at 0x7f32345e3b90>",
+            "id": "<src.operation.Operation object at 0x7f181ac6fe30>",
             "name": "",
             "shape": "point",
             "xlabel": "params.outdir",
@@ -33,7 +33,7 @@
             "artificial": false
         },
         {
-            "id": "<src.operation.Operation object at 0x7f32345e3d10>",
+            "id": "<src.operation.Operation object at 0x7f181ac6ffb0>",
             "name": "",
             "shape": "point",
             "xlabel": "params.input",
@@ -41,7 +41,7 @@
             "artificial": false
         },
         {
-            "id": "<src.operation.Operation object at 0x7f32345e3e30>",
+            "id": "<src.operation.Operation object at 0x7f181ac84110>",
             "name": "",
             "shape": "point",
             "xlabel": "params.help",
@@ -49,7 +49,7 @@
             "artificial": false
         },
         {
-            "id": "<src.operation.Operation object at 0x7f32345e3f50>",
+            "id": "<src.operation.Operation object at 0x7f181ac84230>",
             "name": "",
             "shape": "point",
             "xlabel": "params.help_full",
@@ -57,7 +57,7 @@
             "artificial": false
         },
         {
-            "id": "<src.operation.Operation object at 0x7f32345e3fe0>",
+            "id": "<src.operation.Operation object at 0x7f181ac84350>",
             "name": "",
             "shape": "point",
             "xlabel": "params.show_hidden",
@@ -65,7 +65,7 @@
             "artificial": false
         },
         {
-            "id": "<src.operation.Operation object at 0x7f32345f8260>",
+            "id": "<src.operation.Operation object at 0x7f181ac84500>",
             "name": "",
             "shape": "point",
             "xlabel": "params.email",
@@ -73,7 +73,7 @@
             "artificial": false
         },
         {
-            "id": "<src.operation.Operation object at 0x7f32345f83e0>",
+            "id": "<src.operation.Operation object at 0x7f181ac846b0>",
             "name": "",
             "shape": "point",
             "xlabel": "params.email_on_fail",
@@ -81,7 +81,7 @@
             "artificial": false
         },
         {
-            "id": "<src.operation.Operation object at 0x7f32345f84d0>",
+            "id": "<src.operation.Operation object at 0x7f181ac84770>",
             "name": "",
             "shape": "point",
             "xlabel": "params.plaintext_email",
@@ -89,7 +89,7 @@
             "artificial": false
         },
         {
-            "id": "<src.operation.Operation object at 0x7f32345f8650>",
+            "id": "<src.operation.Operation object at 0x7f181ac84830>",
             "name": "",
             "shape": "point",
             "xlabel": "params.outdir",
@@ -97,7 +97,7 @@
             "artificial": false
         },
         {
-            "id": "<src.operation.Operation object at 0x7f32345f8740>",
+            "id": "<src.operation.Operation object at 0x7f181ac84aa0>",
             "name": "",
             "shape": "point",
             "xlabel": "params.monochrome_logs",
@@ -105,7 +105,7 @@
             "artificial": false
         },
         {
-            "id": "<src.operation.Operation object at 0x7f32345f88c0>",
+            "id": "<src.operation.Operation object at 0x7f181ac84bc0>",
             "name": "",
             "shape": "point",
             "xlabel": "params.hook_url",
@@ -115,5368 +115,5368 @@
     ],
     "edges": [
         {
-            "A": "<src.operation.Operation object at 0x7f323488b1a0>",
-            "B": "<src.operation.Operation object at 0x7f3266cc6cf0>",
+            "A": "<src.operation.Operation object at 0x7f181af23830>",
+            "B": "<src.operation.Operation object at 0x7f1874207590>",
             "label": "ch_samplesheet"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32661b6180>",
-            "B": "<src.operation.Operation object at 0x7f3266cc6cf0>",
+            "A": "<src.operation.Operation object at 0x7f18741d6750>",
+            "B": "<src.operation.Operation object at 0x7f1874207590>",
             "label": "ch_samplesheet"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348a6150>",
-            "B": "<src.operation.Operation object at 0x7f3266cc6cf0>",
+            "A": "<src.operation.Operation object at 0x7f181af36990>",
+            "B": "<src.operation.Operation object at 0x7f1874207590>",
             "label": "ch_samplesheet"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348a6d20>",
-            "B": "<src.operation.Operation object at 0x7f32345e2e70>",
+            "A": "<src.operation.Operation object at 0x7f181af375c0>",
+            "B": "<src.operation.Operation object at 0x7f181ac6f0e0>",
             "label": "ch_multiqc"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348b7890>",
-            "B": "<src.operation.Operation object at 0x7f32345e2e70>",
+            "A": "<src.operation.Operation object at 0x7f181af64050>",
+            "B": "<src.operation.Operation object at 0x7f181ac6f0e0>",
             "label": "ch_multiqc"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f323476b260>",
-            "B": "<src.operation.Operation object at 0x7f32345e2e70>",
+            "A": "<src.operation.Operation object at 0x7f181affeff0>",
+            "B": "<src.operation.Operation object at 0x7f181ac6f0e0>",
             "label": "ch_multiqc"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32347f4290>",
-            "B": "<src.operation.Operation object at 0x7f32345e2e70>",
+            "A": "<src.operation.Operation object at 0x7f181ae847d0>",
+            "B": "<src.operation.Operation object at 0x7f181ac6f0e0>",
             "label": "ch_multiqc"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f3234639d90>",
-            "B": "<src.operation.Operation object at 0x7f32345e2e70>",
+            "A": "<src.operation.Operation object at 0x7f181aec6000>",
+            "B": "<src.operation.Operation object at 0x7f181ac6f0e0>",
             "label": "ch_multiqc"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f323464c740>",
-            "B": "<src.operation.Operation object at 0x7f32345e2e70>",
+            "A": "<src.operation.Operation object at 0x7f181aed8aa0>",
+            "B": "<src.operation.Operation object at 0x7f181ac6f0e0>",
             "label": "ch_multiqc"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f323466fec0>",
-            "B": "<src.operation.Operation object at 0x7f32345e2e70>",
+            "A": "<src.operation.Operation object at 0x7f181ad0ff80>",
+            "B": "<src.operation.Operation object at 0x7f181ac6f0e0>",
             "label": "ch_multiqc"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f3234534c20>",
-            "B": "<src.operation.Operation object at 0x7f32345e2e70>",
+            "A": "<src.operation.Operation object at 0x7f181adc1220>",
+            "B": "<src.operation.Operation object at 0x7f181ac6f0e0>",
             "label": "ch_multiqc"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f3234580a10>",
-            "B": "<src.operation.Operation object at 0x7f32345e2e70>",
+            "A": "<src.operation.Operation object at 0x7f181ac06540>",
+            "B": "<src.operation.Operation object at 0x7f181ac6f0e0>",
             "label": "ch_multiqc"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348cd040>",
-            "B": "<src.operation.Operation object at 0x7f32348b7770>",
+            "A": "<src.operation.Operation object at 0x7f181af65f70>",
+            "B": "<src.operation.Operation object at 0x7f181af64140>",
             "label": "ch_versions"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32347231a0>",
-            "B": "<src.operation.Operation object at 0x7f32348b7770>",
+            "A": "<src.operation.Operation object at 0x7f181afb3740>",
+            "B": "<src.operation.Operation object at 0x7f181af64140>",
             "label": "ch_versions"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348ce3f0>",
-            "B": "<src.operation.Operation object at 0x7f32348b7770>",
+            "A": "<src.operation.Operation object at 0x7f181afc92e0>",
+            "B": "<src.operation.Operation object at 0x7f181af64140>",
             "label": "ch_versions"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348ce150>",
-            "B": "<src.operation.Operation object at 0x7f32348b7770>",
+            "A": "<src.operation.Operation object at 0x7f181af66840>",
+            "B": "<src.operation.Operation object at 0x7f181af64140>",
             "label": "ch_versions"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348ce2a0>",
-            "B": "<src.operation.Operation object at 0x7f32348b7770>",
+            "A": "<src.operation.Operation object at 0x7f181af66960>",
+            "B": "<src.operation.Operation object at 0x7f181af64140>",
             "label": "ch_versions"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348ce0f0>",
-            "B": "<src.operation.Operation object at 0x7f32348b7770>",
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             "label": "ch_versions"
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-            "A": "<src.operation.Operation object at 0x7f32348ce510>",
-            "B": "<src.operation.Operation object at 0x7f32348b7770>",
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             "label": "ch_versions"
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-            "B": "<src.operation.Operation object at 0x7f32348b7770>",
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             "label": "ch_versions"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348ce840>",
-            "B": "<src.operation.Operation object at 0x7f32348b7770>",
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             "label": "ch_versions"
         },
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-            "A": "<src.operation.Operation object at 0x7f32348ce8d0>",
-            "B": "<src.operation.Operation object at 0x7f32348b7770>",
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             "label": "ch_versions"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348ce9f0>",
-            "B": "<src.operation.Operation object at 0x7f32348b7770>",
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             "label": "ch_versions"
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         {
-            "A": "<src.operation.Operation object at 0x7f32348cea80>",
-            "B": "<src.operation.Operation object at 0x7f32348b7770>",
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-            "B": "<src.process.Process object at 0x7f32345275c0>",
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-            "B": "<src.process.Process object at 0x7f32345275c0>",
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-            "B": "<src.process.Process object at 0x7f32345275c0>",
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-            "B": "<src.process.Process object at 0x7f32345275c0>",
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-            "B": "<src.process.Process object at 0x7f32345275c0>",
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-            "B": "<src.process.Process object at 0x7f32345275c0>",
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-            "B": "<src.process.Process object at 0x7f32345275c0>",
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-            "B": "<src.process.Process object at 0x7f32345275c0>",
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-            "B": "<src.process.Process object at 0x7f32345275c0>",
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-            "B": "<src.process.Process object at 0x7f32345275c0>",
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-            "B": "<src.process.Process object at 0x7f32345275c0>",
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         {
-            "A": "<src.operation.Operation object at 0x7f32346e3890>",
-            "B": "<src.process.Process object at 0x7f32345c8500>",
+            "A": "<src.operation.Operation object at 0x7f181ad3f830>",
+            "B": "<src.process.Process object at 0x7f181ac3ecc0>",
             "label": "ch_boltz_ccd"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f3234583e00>",
-            "B": "<src.process.Process object at 0x7f32345c8500>",
+            "A": "<src.operation.Operation object at 0x7f181ac07da0>",
+            "B": "<src.process.Process object at 0x7f181ac3ecc0>",
             "label": "ch_boltz_ccd"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f3234583920>",
-            "B": "<src.process.Process object at 0x7f32345c8500>",
+            "A": "<src.operation.Operation object at 0x7f181ac078f0>",
+            "B": "<src.process.Process object at 0x7f181ac3ecc0>",
             "label": "ch_boltz2_aff"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f3234583ef0>",
-            "B": "<src.process.Process object at 0x7f32345c8500>",
+            "A": "<src.operation.Operation object at 0x7f181ac07ef0>",
+            "B": "<src.process.Process object at 0x7f181ac3ecc0>",
             "label": "ch_boltz2_aff"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f323458c0e0>",
-            "B": "<src.process.Process object at 0x7f32345c8500>",
+            "A": "<src.operation.Operation object at 0x7f181ac180e0>",
+            "B": "<src.process.Process object at 0x7f181ac3ecc0>",
             "label": "ch_boltz2_conf"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32345839b0>",
-            "B": "<src.process.Process object at 0x7f32345c8500>",
+            "A": "<src.operation.Operation object at 0x7f181ac079b0>",
+            "B": "<src.process.Process object at 0x7f181ac3ecc0>",
             "label": "ch_boltz2_conf"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f323458c200>",
-            "B": "<src.process.Process object at 0x7f32345c8500>",
+            "A": "<src.operation.Operation object at 0x7f181ac18200>",
+            "B": "<src.process.Process object at 0x7f181ac3ecc0>",
             "label": "ch_boltz2_mols"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f3234583b00>",
-            "B": "<src.process.Process object at 0x7f32345c8500>",
+            "A": "<src.operation.Operation object at 0x7f181ac07b00>",
+            "B": "<src.process.Process object at 0x7f181ac3ecc0>",
             "label": "ch_boltz2_mols"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348a7560>",
-            "B": "<src.process.Process object at 0x7f32348b55e0>",
+            "A": "<src.operation.Operation object at 0x7f181af37dd0>",
+            "B": "<src.process.Process object at 0x7f181af4dd60>",
             "label": "ch_comparison_template"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348a6e40>",
-            "B": "<src.process.Process object at 0x7f32348b4d10>",
+            "A": "<src.operation.Operation object at 0x7f181af376e0>",
+            "B": "<src.process.Process object at 0x7f189a162960>",
             "label": "ch_report_input"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348b7920>",
-            "B": "<src.process.Process object at 0x7f32348b4d10>",
+            "A": "<src.operation.Operation object at 0x7f181af64260>",
+            "B": "<src.process.Process object at 0x7f189a162960>",
             "label": "ch_report_input"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f323476b2f0>",
-            "B": "<src.process.Process object at 0x7f32348b4d10>",
+            "A": "<src.operation.Operation object at 0x7f181afff230>",
+            "B": "<src.process.Process object at 0x7f189a162960>",
             "label": "ch_report_input"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32347f42c0>",
-            "B": "<src.process.Process object at 0x7f32348b4d10>",
+            "A": "<src.operation.Operation object at 0x7f181ae84aa0>",
+            "B": "<src.process.Process object at 0x7f189a162960>",
             "label": "ch_report_input"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f3234639f10>",
-            "B": "<src.process.Process object at 0x7f32348b4d10>",
+            "A": "<src.operation.Operation object at 0x7f181aec6270>",
+            "B": "<src.process.Process object at 0x7f189a162960>",
             "label": "ch_report_input"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f323464c980>",
-            "B": "<src.process.Process object at 0x7f32348b4d10>",
+            "A": "<src.operation.Operation object at 0x7f181aed8bc0>",
+            "B": "<src.process.Process object at 0x7f189a162960>",
             "label": "ch_report_input"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f3234672d50>",
-            "B": "<src.process.Process object at 0x7f32348b4d10>",
+            "A": "<src.operation.Operation object at 0x7f181ad24080>",
+            "B": "<src.process.Process object at 0x7f189a162960>",
             "label": "ch_report_input"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32345349b0>",
-            "B": "<src.process.Process object at 0x7f32348b4d10>",
+            "A": "<src.operation.Operation object at 0x7f181adb34d0>",
+            "B": "<src.process.Process object at 0x7f189a162960>",
             "label": "ch_report_input"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32345828d0>",
-            "B": "<src.process.Process object at 0x7f32348b4d10>",
+            "A": "<src.operation.Operation object at 0x7f181ac06780>",
+            "B": "<src.process.Process object at 0x7f189a162960>",
             "label": "ch_report_input"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348a73e0>",
-            "B": "<src.process.Process object at 0x7f32348b4d10>",
+            "A": "<src.operation.Operation object at 0x7f181af37c80>",
+            "B": "<src.process.Process object at 0x7f189a162960>",
             "label": "ch_report_template"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348a6ed0>",
-            "B": "<src.process.Process object at 0x7f32348b6240>",
+            "A": "<src.operation.Operation object at 0x7f181af37770>",
+            "B": "<src.process.Process object at 0x7f181af4ea20>",
             "label": "ch_top_ranked_model"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348b7a70>",
-            "B": "<src.process.Process object at 0x7f32348b6240>",
+            "A": "<src.operation.Operation object at 0x7f181af64320>",
+            "B": "<src.process.Process object at 0x7f181af4ea20>",
             "label": "ch_top_ranked_model"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f323476b440>",
-            "B": "<src.process.Process object at 0x7f32348b6240>",
+            "A": "<src.operation.Operation object at 0x7f181afff2f0>",
+            "B": "<src.process.Process object at 0x7f181af4ea20>",
             "label": "ch_top_ranked_model"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32347f4620>",
-            "B": "<src.process.Process object at 0x7f32348b6240>",
+            "A": "<src.operation.Operation object at 0x7f181ae84b60>",
+            "B": "<src.process.Process object at 0x7f181af4ea20>",
             "label": "ch_top_ranked_model"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f3234639fd0>",
-            "B": "<src.process.Process object at 0x7f32348b6240>",
+            "A": "<src.operation.Operation object at 0x7f181aec6330>",
+            "B": "<src.process.Process object at 0x7f181af4ea20>",
             "label": "ch_top_ranked_model"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f323464caa0>",
-            "B": "<src.process.Process object at 0x7f32348b6240>",
+            "A": "<src.operation.Operation object at 0x7f181aed8c80>",
+            "B": "<src.process.Process object at 0x7f181af4ea20>",
             "label": "ch_top_ranked_model"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f3234673650>",
-            "B": "<src.process.Process object at 0x7f32348b6240>",
+            "A": "<src.operation.Operation object at 0x7f181ad24140>",
+            "B": "<src.process.Process object at 0x7f181af4ea20>",
             "label": "ch_top_ranked_model"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f3234537770>",
-            "B": "<src.process.Process object at 0x7f32348b6240>",
+            "A": "<src.operation.Operation object at 0x7f181adb26c0>",
+            "B": "<src.process.Process object at 0x7f181af4ea20>",
             "label": "ch_top_ranked_model"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f3234582990>",
-            "B": "<src.process.Process object at 0x7f32348b6240>",
+            "A": "<src.operation.Operation object at 0x7f181ac06ed0>",
+            "B": "<src.process.Process object at 0x7f181af4ea20>",
             "label": "ch_top_ranked_model"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348a6030>",
-            "B": "<src.process.Process object at 0x7f32348b6240>",
+            "A": "<src.operation.Operation object at 0x7f18741868a0>",
+            "B": "<src.process.Process object at 0x7f181af4ea20>",
             "label": "ch_foldseek_db"
         },
         {
-            "A": "<src.operation.Operation object at 0x7f32348a71a0>",
-            "B": "<src.process.Process object at 0x7f32348b6b70>",
+            "A": "<src.operation.Operation object at 0x7f181af37a40>",
+            "B": "<src.process.Process object at 0x7f181af4f350>",
             "label": "ch_multiqc_config"
         }
     ],
@@ -5484,23 +5484,23 @@
         "PIPELINE_INITIALISATION": {
             "nodes": [
                 {
-                    "id": "<src.operation.Operation object at 0x7f32661b6180>",
+                    "id": "<src.operation.Operation object at 0x7f18741d6750>",
                     "name": "",
                     "shape": "point",
-                    "xlabel": "ch_samplesheet = ch_samplesheet.map_modified { \u00a4139854438162432_1\u00a4 }",
+                    "xlabel": "ch_samplesheet = ch_samplesheet.map_modified { \u00a4139743003693408_1\u00a4 }",
                     "fillcolor": "white",
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a6150>",
+                    "id": "<src.operation.Operation object at 0x7f181af36990>",
                     "name": "",
                     "shape": "point",
-                    "xlabel": "ch_samplesheet.map_modified { \u00a4139854438162432_2\u00a4 }.splitFasta( record: [header: true, sequence: true], elem: 1 ).collectFile { sample_id, item ->\n                [ '${cleanHeader(sample_id.toString())}_${cleanHeader(item['header'])}.fa', '>' + cleanHeader(item['header']) + '\\n' +item['sequence'] ]\n            }.map_modified { \u00a4139854438162432_3\u00a4 }.set { ch_samplesheet }",
+                    "xlabel": "ch_samplesheet.map_modified { \u00a4139743003693408_2\u00a4 }.splitFasta( record: [header: true, sequence: true], elem: 1 ).collectFile { sample_id, item ->\n                [ '${cleanHeader(sample_id.toString())}_${cleanHeader(item['header'])}.fa', '>' + cleanHeader(item['header']) + '\\n' +item['sequence'] ]\n            }.map_modified { \u00a4139743003693408_3\u00a4 }.set { ch_samplesheet }",
                     "fillcolor": "white",
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32661caa50>",
+                    "id": "<src.operation.Operation object at 0x7f187406b560>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions = channel.empty()",
@@ -5508,7 +5508,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323488aff0>",
+                    "id": "<src.operation.Operation object at 0x7f181af236b0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "before_text = '''\n-${colors.dim}----------------------------------------------------${colors.reset}-\n                                        ${colors.green},--.${colors.black}/${colors.green},-.${colors.reset}\n${colors.blue}        ___     __   __   __   ___     ${colors.green}/,-._.--~$anti_slash_single$${colors.reset}\n${colors.blue}  |\\\\ | |__  __ /  ` /  \\\\ |__) |__         ${colors.yellow}}  {${colors.reset}\n${colors.blue}  | \\\\| |       \\\\__, \\\\__/ |  \\\\ |___     ${colors.green}\\\\`-._,-`-,${colors.reset}\n                                        ${colors.green}`._,._,$anti_slash_single$${colors.reset}\n${colors.purple}  nf-core/proteinfold ${workflow.manifest.version}${colors.reset}\n-${colors.dim}----------------------------------------------------${colors.reset}-\n'''",
@@ -5516,7 +5516,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323488b050>",
+                    "id": "<src.operation.Operation object at 0x7f181af23710>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "after_text = '''${workflow.manifest.doi ? '\\n* The pipeline\\n' : ''}${workflow.manifest.doi.tokenize(',').collect { doi -> '    https_link_doi.org/${doi.trim().replace('https_link_doi.org/','')}'}.join('\\n')}${workflow.manifest.doi ? '\\n' : ''}\n* The nf-core framework\n    https_link_doi.org/10.1038/s41587-020-0439-x\n\n* Software dependencies\n    https_link_github.com/nf-core/proteinfold/blob/master/CITATIONS.md\n'''",
@@ -5524,7 +5524,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234983110>",
+                    "id": "<src.operation.Operation object at 0x7f181af237a0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "command = 'nextflow run ${workflow.manifest.name} -profile <docker/singularity/.../institute> --input samplesheet.csv --outdir <OUTDIR>'",
@@ -5532,7 +5532,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323488b1a0>",
+                    "id": "<src.operation.Operation object at 0x7f181af23830>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_samplesheet = channel.fromList(samplesheetToList(input, 'assets/schema_input.json'))",
@@ -5540,7 +5540,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a5640>",
+                    "id": "<src.operation.Operation object at 0x7f181af35e20>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1",
@@ -5548,58 +5548,58 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32349c5eb0>",
+                    "id": "<src.operation.Operation object at 0x7f187416deb0>",
                     "name": "",
                     "shape": "point",
-                    "xlabel": "ch_samplesheet.map_modified { \u00a4139854438162432_0\u00a4 }",
+                    "xlabel": "ch_samplesheet.map_modified { \u00a4139743003693408_0\u00a4 }",
                     "fillcolor": "",
                     "artificial": false
                 }
             ],
             "edges": [
                 {
-                    "A": "<src.operation.Operation object at 0x7f323488b1a0>",
-                    "B": "<src.operation.Operation object at 0x7f32661b6180>",
+                    "A": "<src.operation.Operation object at 0x7f181af23830>",
+                    "B": "<src.operation.Operation object at 0x7f18741d6750>",
                     "label": "ch_samplesheet"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32661b6180>",
-                    "B": "<src.operation.Operation object at 0x7f32661b6180>",
+                    "A": "<src.operation.Operation object at 0x7f18741d6750>",
+                    "B": "<src.operation.Operation object at 0x7f18741d6750>",
                     "label": "ch_samplesheet"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6150>",
-                    "B": "<src.operation.Operation object at 0x7f32661b6180>",
+                    "A": "<src.operation.Operation object at 0x7f181af36990>",
+                    "B": "<src.operation.Operation object at 0x7f18741d6750>",
                     "label": "ch_samplesheet"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323488b1a0>",
-                    "B": "<src.operation.Operation object at 0x7f32348a6150>",
+                    "A": "<src.operation.Operation object at 0x7f181af23830>",
+                    "B": "<src.operation.Operation object at 0x7f181af36990>",
                     "label": "ch_samplesheet"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32661b6180>",
-                    "B": "<src.operation.Operation object at 0x7f32348a6150>",
+                    "A": "<src.operation.Operation object at 0x7f18741d6750>",
+                    "B": "<src.operation.Operation object at 0x7f181af36990>",
                     "label": "ch_samplesheet"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6150>",
-                    "B": "<src.operation.Operation object at 0x7f32348a6150>",
+                    "A": "<src.operation.Operation object at 0x7f181af36990>",
+                    "B": "<src.operation.Operation object at 0x7f181af36990>",
                     "label": "ch_samplesheet"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323488b1a0>",
-                    "B": "<src.operation.Operation object at 0x7f32349c5eb0>",
+                    "A": "<src.operation.Operation object at 0x7f181af23830>",
+                    "B": "<src.operation.Operation object at 0x7f187416deb0>",
                     "label": "ch_samplesheet"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32661b6180>",
-                    "B": "<src.operation.Operation object at 0x7f32349c5eb0>",
+                    "A": "<src.operation.Operation object at 0x7f18741d6750>",
+                    "B": "<src.operation.Operation object at 0x7f187416deb0>",
                     "label": "ch_samplesheet"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6150>",
-                    "B": "<src.operation.Operation object at 0x7f32349c5eb0>",
+                    "A": "<src.operation.Operation object at 0x7f181af36990>",
+                    "B": "<src.operation.Operation object at 0x7f187416deb0>",
                     "label": "ch_samplesheet"
                 }
             ],
@@ -5612,7 +5612,7 @@
                 "UTILS_NFSCHEMA_PLUGIN": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f32349547a0>",
+                            "id": "<src.operation.Operation object at 0x7f1874184fe0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "help_options = [\n            beforeText: before_text,\n            afterText: after_text,\n            command: command,\n            showHidden: show_hidden,\n            fullHelp: help_full,\n        ]",
@@ -5620,7 +5620,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32349c4a10>",
+                            "id": "<src.operation.Operation object at 0x7f1874075280>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "validateOptions = [:]",
@@ -5628,7 +5628,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348a4650>",
+                            "id": "<src.operation.Operation object at 0x7f1874074ec0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "summary_options = [:]",
@@ -5642,7 +5642,7 @@
                 "UTILS_NFCORE_PIPELINE": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234924e90>",
+                            "id": "<src.operation.Operation object at 0x7f18741856a0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "valid_config = checkConfigProvided()",
@@ -5658,7 +5658,7 @@
         "NFCORE_PROTEINFOLD": {
             "nodes": [
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348b7770>",
+                    "id": "<src.operation.Operation object at 0x7f181af64140>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions = ch_versions.mix(PREPARE_ALPHAFOLD2_DBS.out.versions)",
@@ -5666,7 +5666,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348b7890>",
+                    "id": "<src.operation.Operation object at 0x7f181af64050>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_multiqc          = ch_multiqc.mix(ALPHAFOLD2.out.multiqc_report.collect())",
@@ -5674,7 +5674,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348b77a0>",
+                    "id": "<src.operation.Operation object at 0x7f181af641d0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions         = ch_versions.mix(ALPHAFOLD2.out.versions)",
@@ -5682,15 +5682,15 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348b7920>",
+                    "id": "<src.operation.Operation object at 0x7f181af64260>",
                     "name": "",
                     "shape": "point",
-                    "xlabel": "ch_report_input     = ch_report_input.mix(ALPHAFOLD2.out.pdb.map_modified { \u00a4139854452576080_0\u00a4 }.join(ALPHAFOLD2.out.msa).join(ALPHAFOLD2.out.pae)\n                            )",
+                    "xlabel": "ch_report_input     = ch_report_input.mix(ALPHAFOLD2.out.pdb.map_modified { \u00a4139743003410112_0\u00a4 }.join(ALPHAFOLD2.out.msa).join(ALPHAFOLD2.out.pae)\n                            )",
                     "fillcolor": "white",
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348b7a70>",
+                    "id": "<src.operation.Operation object at 0x7f181af64320>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_top_ranked_model = ch_top_ranked_model.mix(ALPHAFOLD2.out.top_ranked_pdb)",
@@ -5698,7 +5698,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234768650>",
+                    "id": "<src.operation.Operation object at 0x7f181affcbf0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_db",
@@ -5706,7 +5706,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347688f0>",
+                    "id": "<src.operation.Operation object at 0x7f181affc830>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_full_dbs",
@@ -5714,7 +5714,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234768a10>",
+                    "id": "<src.operation.Operation object at 0x7f181affcf50>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_bfd_path",
@@ -5722,7 +5722,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234768b60>",
+                    "id": "<src.operation.Operation object at 0x7f181affd010>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_small_bfd_path",
@@ -5730,7 +5730,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234768d10>",
+                    "id": "<src.operation.Operation object at 0x7f181affd220>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_params_path",
@@ -5738,7 +5738,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234768ef0>",
+                    "id": "<src.operation.Operation object at 0x7f181affd340>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_mgnify_path",
@@ -5746,7 +5746,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234769010>",
+                    "id": "<src.operation.Operation object at 0x7f181affd460>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_pdb70_path",
@@ -5754,7 +5754,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234769130>",
+                    "id": "<src.operation.Operation object at 0x7f181affd580>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_pdb_mmcif_path",
@@ -5762,7 +5762,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234769250>",
+                    "id": "<src.operation.Operation object at 0x7f181affd640>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_pdb_obsolete_path",
@@ -5770,7 +5770,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347692b0>",
+                    "id": "<src.operation.Operation object at 0x7f181affd7f0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_uniref30_path",
@@ -5778,7 +5778,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234981160>",
+                    "id": "<src.operation.Operation object at 0x7f181affd910>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_uniref90_path",
@@ -5786,7 +5786,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234756cc0>",
+                    "id": "<src.operation.Operation object at 0x7f181affda30>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_pdb_seqres_path",
@@ -5794,7 +5794,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234755ca0>",
+                    "id": "<src.operation.Operation object at 0x7f181affdb20>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_uniprot_path",
@@ -5802,7 +5802,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234755430>",
+                    "id": "<src.operation.Operation object at 0x7f181affdca0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_bfd_link",
@@ -5810,7 +5810,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234755220>",
+                    "id": "<src.operation.Operation object at 0x7f181affddc0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_small_bfd_link",
@@ -5818,7 +5818,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234768c50>",
+                    "id": "<src.operation.Operation object at 0x7f181affdee0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_params_link",
@@ -5826,7 +5826,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347689e0>",
+                    "id": "<src.operation.Operation object at 0x7f181affe000>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_mgnify_link",
@@ -5834,7 +5834,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234769310>",
+                    "id": "<src.operation.Operation object at 0x7f181affe090>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_pdb70_link",
@@ -5842,7 +5842,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347693a0>",
+                    "id": "<src.operation.Operation object at 0x7f181affe240>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_pdb_mmcif_link",
@@ -5850,7 +5850,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234769580>",
+                    "id": "<src.operation.Operation object at 0x7f181affe360>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_pdb_obsolete_link",
@@ -5858,7 +5858,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347696a0>",
+                    "id": "<src.operation.Operation object at 0x7f18741d5e50>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_uniref30_link",
@@ -5866,7 +5866,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347697c0>",
+                    "id": "<src.operation.Operation object at 0x7f181af35a90>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_uniref90_link",
@@ -5874,7 +5874,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347698e0>",
+                    "id": "<src.operation.Operation object at 0x7f181afeb2f0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_pdb_seqres_link",
@@ -5882,7 +5882,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234769a00>",
+                    "id": "<src.operation.Operation object at 0x7f18741ca270>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_uniprot_sprot_link",
@@ -5890,7 +5890,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234769af0>",
+                    "id": "<src.operation.Operation object at 0x7f181afcb2f0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_uniprot_trembl_link",
@@ -5898,7 +5898,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234769d90>",
+                    "id": "<src.operation.Operation object at 0x7f181affd9a0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_full_dbs",
@@ -5906,7 +5906,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234769f10>",
+                    "id": "<src.operation.Operation object at 0x7f181affdbb0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_mode",
@@ -5914,7 +5914,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323476a030>",
+                    "id": "<src.operation.Operation object at 0x7f181affd250>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold2_model_preset",
@@ -5922,7 +5922,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323476a150>",
+                    "id": "<src.operation.Operation object at 0x7f181affd6d0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.uniref30_prefix",
@@ -5930,7 +5930,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234769c10>",
+                    "id": "<src.operation.Operation object at 0x7f181afff050>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions = ch_versions.mix(PREPARE_ALPHAFOLD3_DBS.out.versions)",
@@ -5938,7 +5938,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323476b260>",
+                    "id": "<src.operation.Operation object at 0x7f181affeff0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_multiqc      = ch_multiqc.mix(ALPHAFOLD3.out.multiqc_report)",
@@ -5946,7 +5946,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323476b2c0>",
+                    "id": "<src.operation.Operation object at 0x7f181afff110>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions     = ch_versions.mix(ALPHAFOLD3.out.versions)",
@@ -5954,15 +5954,15 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323476b2f0>",
+                    "id": "<src.operation.Operation object at 0x7f181afff230>",
                     "name": "",
                     "shape": "point",
-                    "xlabel": "ch_report_input = ch_report_input.mix(\n                                ALPHAFOLD3.out.pdb.map_modified { \u00a4139854452576080_1\u00a4 }.join(ALPHAFOLD3.out.msa).join(ALPHAFOLD3.out.pae)\n                            )",
+                    "xlabel": "ch_report_input = ch_report_input.mix(\n                                ALPHAFOLD3.out.pdb.map_modified { \u00a4139743003410112_1\u00a4 }.join(ALPHAFOLD3.out.msa).join(ALPHAFOLD3.out.pae)\n                            )",
                     "fillcolor": "white",
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323476b440>",
+                    "id": "<src.operation.Operation object at 0x7f181afff2f0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_top_ranked_model = ch_top_ranked_model.mix(ALPHAFOLD3.out.top_ranked_pdb)",
@@ -5970,7 +5970,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347ea060>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7e5a0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_db",
@@ -5978,7 +5978,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347ea300>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7e3c0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_params_path",
@@ -5986,7 +5986,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347ea420>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7e900>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_small_bfd_path",
@@ -5994,7 +5994,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347ea540>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7ea20>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_mgnify_path",
@@ -6002,7 +6002,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347ea660>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7eb40>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_pdb_mmcif_path",
@@ -6010,7 +6010,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347ea780>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7ec60>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_uniref90_path",
@@ -6018,7 +6018,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347ea8a0>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7ed80>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_pdb_seqres_path",
@@ -6026,7 +6026,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347ea9c0>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7eea0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_uniprot_path",
@@ -6034,7 +6034,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347eaa20>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7efc0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_rnacentral_path",
@@ -6042,7 +6042,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347eac00>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7f0e0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_nt_rna_path",
@@ -6050,7 +6050,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347ead20>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7f200>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_rfam_path",
@@ -6058,7 +6058,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347eae40>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7f320>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_small_bfd_link",
@@ -6066,7 +6066,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347eaf60>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7f440>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_mgnify_link",
@@ -6074,7 +6074,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347eb080>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7f560>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_pdb_mmcif_link",
@@ -6082,7 +6082,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347cb110>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7f680>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_uniref90_link",
@@ -6090,7 +6090,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347eb290>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7f6e0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_pdb_seqres_link",
@@ -6098,7 +6098,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347eb3b0>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7f8f0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_uniprot_link",
@@ -6106,7 +6106,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347eb3e0>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7fa10>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_rnacentral_link",
@@ -6114,7 +6114,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347eb5f0>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7fb30>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_nt_rna_link",
@@ -6122,7 +6122,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347eb620>",
+                    "id": "<src.operation.Operation object at 0x7f181ae7fc50>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.alphafold3_rfam_link",
@@ -6130,7 +6130,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347f43e0>",
+                    "id": "<src.operation.Operation object at 0x7f181ae84a10>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions = ch_versions.mix(PREPARE_COLABFOLD_DBS_COLABFOLD.out.versions)",
@@ -6138,7 +6138,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347f4290>",
+                    "id": "<src.operation.Operation object at 0x7f181ae847d0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_multiqc          = ch_multiqc.mix(COLABFOLD.out.multiqc_report)",
@@ -6146,7 +6146,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347f4410>",
+                    "id": "<src.operation.Operation object at 0x7f181ae848f0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions         = ch_versions.mix(COLABFOLD.out.versions)",
@@ -6154,15 +6154,15 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347f42c0>",
+                    "id": "<src.operation.Operation object at 0x7f181ae84aa0>",
                     "name": "",
                     "shape": "point",
-                    "xlabel": "ch_report_input     = ch_report_input.mix(COLABFOLD.out.pdb.map_modified { \u00a4139854452576080_2\u00a4 }.join(COLABFOLD.out.msa).join(COLABFOLD.out.pae)\n                            )",
+                    "xlabel": "ch_report_input     = ch_report_input.mix(COLABFOLD.out.pdb.map_modified { \u00a4139743003410112_2\u00a4 }.join(COLABFOLD.out.msa).join(COLABFOLD.out.pae)\n                            )",
                     "fillcolor": "white",
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32347f4620>",
+                    "id": "<src.operation.Operation object at 0x7f181ae84b60>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_top_ranked_model = ch_top_ranked_model.mix(COLABFOLD.out.top_ranked_pdb)",
@@ -6170,7 +6170,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234638a70>",
+                    "id": "<src.operation.Operation object at 0x7f181aec4e30>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_db",
@@ -6178,7 +6178,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234638d10>",
+                    "id": "<src.operation.Operation object at 0x7f181aec50d0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.use_msa_server",
@@ -6186,7 +6186,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234638e30>",
+                    "id": "<src.operation.Operation object at 0x7f181aec51f0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_alphafold2_params_path",
@@ -6194,7 +6194,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234638f20>",
+                    "id": "<src.operation.Operation object at 0x7f181aec5310>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_envdb_path",
@@ -6202,7 +6202,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234638fe0>",
+                    "id": "<src.operation.Operation object at 0x7f181aec5430>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_uniref30_path",
@@ -6210,7 +6210,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32346391f0>",
+                    "id": "<src.operation.Operation object at 0x7f181aec5550>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_alphafold2_params_link",
@@ -6218,7 +6218,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234639310>",
+                    "id": "<src.operation.Operation object at 0x7f181aec5640>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_db_link",
@@ -6226,7 +6226,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32346393a0>",
+                    "id": "<src.operation.Operation object at 0x7f181aec57c0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_uniref30_link",
@@ -6234,7 +6234,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234639520>",
+                    "id": "<src.operation.Operation object at 0x7f181aec58e0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_create_index",
@@ -6242,7 +6242,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234639b80>",
+                    "id": "<src.operation.Operation object at 0x7f181aec5e80>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_num_recycles",
@@ -6250,7 +6250,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234639d60>",
+                    "id": "<src.operation.Operation object at 0x7f181aec61e0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions = ch_versions.mix(PREPARE_ESMFOLD_DBS.out.versions)",
@@ -6258,7 +6258,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234639d90>",
+                    "id": "<src.operation.Operation object at 0x7f181aec6000>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_multiqc      = ch_multiqc.mix(ESMFOLD.out.multiqc_report.collect())",
@@ -6266,7 +6266,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234639e80>",
+                    "id": "<src.operation.Operation object at 0x7f181aec5fa0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions     = ch_versions.mix(ESMFOLD.out.versions)",
@@ -6274,7 +6274,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234639f10>",
+                    "id": "<src.operation.Operation object at 0x7f181aec6270>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_report_input = ch_report_input.mix(\n            ESMFOLD.out.pdb.combine(ch_dummy_file).combine(ch_dummy_file_pae)\n        )",
@@ -6282,7 +6282,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234639fd0>",
+                    "id": "<src.operation.Operation object at 0x7f181aec6330>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_top_ranked_model = ch_top_ranked_model.mix(ESMFOLD.out.pdb)",
@@ -6290,7 +6290,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323463b560>",
+                    "id": "<src.operation.Operation object at 0x7f181af75ca0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.esmfold_db",
@@ -6298,7 +6298,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323463bf50>",
+                    "id": "<src.operation.Operation object at 0x7f181aea5670>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.esmfold_params_path",
@@ -6306,7 +6306,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3266173fb0>",
+                    "id": "<src.operation.Operation object at 0x7f181aea6690>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.esmfold_3B_v1",
@@ -6314,7 +6314,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323464c1a0>",
+                    "id": "<src.operation.Operation object at 0x7f18741a5c70>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.esm2_t36_3B_UR50D",
@@ -6322,7 +6322,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323464c230>",
+                    "id": "<src.operation.Operation object at 0x7f181aed86b0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.esm2_t36_3B_UR50D_contact_regression",
@@ -6330,7 +6330,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323464c5f0>",
+                    "id": "<src.operation.Operation object at 0x7f181aed8890>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.esmfold_num_recycles",
@@ -6338,7 +6338,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323464c7d0>",
+                    "id": "<src.operation.Operation object at 0x7f181aed8ad0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions = ch_versions.mix(PREPARE_ROSETTAFOLD_ALL_ATOM_DBS.out.versions)",
@@ -6346,7 +6346,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323464c740>",
+                    "id": "<src.operation.Operation object at 0x7f181aed8aa0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_multiqc                              = ch_multiqc.mix(ROSETTAFOLD_ALL_ATOM.out.multiqc_report.collect())",
@@ -6354,7 +6354,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323464c920>",
+                    "id": "<src.operation.Operation object at 0x7f181aed8920>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions                             = ch_versions.mix(ROSETTAFOLD_ALL_ATOM.out.versions)",
@@ -6362,7 +6362,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323464c980>",
+                    "id": "<src.operation.Operation object at 0x7f181aed8bc0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_report_input                         = ch_report_input.mix(ROSETTAFOLD_ALL_ATOM.out.pdb.join(ROSETTAFOLD_ALL_ATOM.out.msa).join(ROSETTAFOLD_ALL_ATOM.out.pae)\n                                                                    )",
@@ -6370,7 +6370,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323464caa0>",
+                    "id": "<src.operation.Operation object at 0x7f181aed8c80>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_top_ranked_model                     = ch_top_ranked_model.mix(ROSETTAFOLD_ALL_ATOM.out.pdb)",
@@ -6378,7 +6378,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234672930>",
+                    "id": "<src.operation.Operation object at 0x7f181ad0eb40>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold_all_atom_db",
@@ -6386,7 +6386,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234672ba0>",
+                    "id": "<src.operation.Operation object at 0x7f181ad0ed80>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold_all_atom_bfd_path",
@@ -6394,7 +6394,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234672cc0>",
+                    "id": "<src.operation.Operation object at 0x7f181ad0eea0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold_all_atom_uniref30_path",
@@ -6402,7 +6402,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234672d20>",
+                    "id": "<src.operation.Operation object at 0x7f181ad0efc0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold_all_atom_pdb100_path",
@@ -6410,7 +6410,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234672f30>",
+                    "id": "<src.operation.Operation object at 0x7f181ad0f0e0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold_all_atom_paper_weights_path",
@@ -6418,7 +6418,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234673050>",
+                    "id": "<src.operation.Operation object at 0x7f181ad0f200>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold_all_atom_bfd_link",
@@ -6426,7 +6426,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234673170>",
+                    "id": "<src.operation.Operation object at 0x7f181ad0f320>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold_all_atom_uniref30_link",
@@ -6434,7 +6434,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234673290>",
+                    "id": "<src.operation.Operation object at 0x7f181ad0f440>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold_all_atom_pdb100_link",
@@ -6442,7 +6442,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32346733b0>",
+                    "id": "<src.operation.Operation object at 0x7f181ad0f560>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold_all_atom_paper_weights_link",
@@ -6450,7 +6450,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32346735c0>",
+                    "id": "<src.operation.Operation object at 0x7f181ad0f7a0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.uniref30_prefix",
@@ -6458,7 +6458,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323464fa10>",
+                    "id": "<src.operation.Operation object at 0x7f181ad0f590>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions = ch_versions.mix(PREPARE_HELIXFOLD3_DBS.out.versions)",
@@ -6466,7 +6466,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323466fec0>",
+                    "id": "<src.operation.Operation object at 0x7f181ad0ff80>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_multiqc          = ch_multiqc.mix(HELIXFOLD3.out.multiqc_report.collect())",
@@ -6474,7 +6474,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234672c30>",
+                    "id": "<src.operation.Operation object at 0x7f181ae87f50>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions         = ch_versions.mix(HELIXFOLD3.out.versions)",
@@ -6482,15 +6482,15 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234672d50>",
+                    "id": "<src.operation.Operation object at 0x7f181ad24080>",
                     "name": "",
                     "shape": "point",
-                    "xlabel": "ch_report_input     = ch_report_input.mix(HELIXFOLD3.out.pdb.map_modified { \u00a4139854452576080_0\u00a4 }.join(HELIXFOLD3.out.msa).join(HELIXFOLD3.out.pae)\n                            )",
+                    "xlabel": "ch_report_input     = ch_report_input.mix(HELIXFOLD3.out.pdb.map_modified { \u00a4139743003410112_0\u00a4 }.join(HELIXFOLD3.out.msa).join(HELIXFOLD3.out.pae)\n                            )",
                     "fillcolor": "white",
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234673650>",
+                    "id": "<src.operation.Operation object at 0x7f181ad24140>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_top_ranked_model = ch_top_ranked_model.mix(HELIXFOLD3.out.top_ranked_pdb)",
@@ -6498,7 +6498,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345354f0>",
+                    "id": "<src.operation.Operation object at 0x7f181adc18b0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_db",
@@ -6506,7 +6506,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234535550>",
+                    "id": "<src.operation.Operation object at 0x7f181adc19a0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_uniclust30_link",
@@ -6514,7 +6514,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234535790>",
+                    "id": "<src.operation.Operation object at 0x7f181adc1b80>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_ccd_preprocessed_link",
@@ -6522,7 +6522,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345358b0>",
+                    "id": "<src.operation.Operation object at 0x7f181adc1d00>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_rfam_link",
@@ -6530,7 +6530,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345359d0>",
+                    "id": "<src.operation.Operation object at 0x7f181adc1e20>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_init_models_link",
@@ -6538,7 +6538,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234535c10>",
+                    "id": "<src.operation.Operation object at 0x7f181adc1f40>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_bfd_link",
@@ -6546,7 +6546,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234535c40>",
+                    "id": "<src.operation.Operation object at 0x7f181adc2060>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_small_bfd_link",
@@ -6554,7 +6554,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234535d60>",
+                    "id": "<src.operation.Operation object at 0x7f181adc2180>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_uniprot_sprot_link",
@@ -6562,7 +6562,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234535e80>",
+                    "id": "<src.operation.Operation object at 0x7f181adc21e0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_uniprot_trembl_link",
@@ -6570,7 +6570,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234535fa0>",
+                    "id": "<src.operation.Operation object at 0x7f181adc23f0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_pdb_seqres_link",
@@ -6578,7 +6578,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345360c0>",
+                    "id": "<src.operation.Operation object at 0x7f181adc2510>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_uniref90_link",
@@ -6586,7 +6586,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345361e0>",
+                    "id": "<src.operation.Operation object at 0x7f181adc2630>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_mgnify_link",
@@ -6594,7 +6594,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234536300>",
+                    "id": "<src.operation.Operation object at 0x7f181adc2750>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_pdb_mmcif_link",
@@ -6602,7 +6602,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234536420>",
+                    "id": "<src.operation.Operation object at 0x7f181adc2870>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_obsolete_link",
@@ -6610,7 +6610,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234536540>",
+                    "id": "<src.operation.Operation object at 0x7f181adc2960>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_maxit_src_link",
@@ -6618,7 +6618,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234536660>",
+                    "id": "<src.operation.Operation object at 0x7f181adc2a20>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_uniclust30_path",
@@ -6626,7 +6626,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234536780>",
+                    "id": "<src.operation.Operation object at 0x7f181adc2c30>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_ccd_preprocessed_path",
@@ -6634,7 +6634,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345368a0>",
+                    "id": "<src.operation.Operation object at 0x7f181adc2c90>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_rfam_path",
@@ -6642,7 +6642,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345369c0>",
+                    "id": "<src.operation.Operation object at 0x7f181adc2ea0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_init_models_path",
@@ -6650,7 +6650,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234536ae0>",
+                    "id": "<src.operation.Operation object at 0x7f181adc2fc0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_bfd_path",
@@ -6658,7 +6658,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234536c00>",
+                    "id": "<src.operation.Operation object at 0x7f181adc30e0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_small_bfd_path",
@@ -6666,7 +6666,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234536d20>",
+                    "id": "<src.operation.Operation object at 0x7f181adc3200>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_uniprot_path",
@@ -6674,7 +6674,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234536f00>",
+                    "id": "<src.operation.Operation object at 0x7f181adc3320>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_pdb_seqres_path",
@@ -6682,7 +6682,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234536f90>",
+                    "id": "<src.operation.Operation object at 0x7f181adc33e0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_uniref90_path",
@@ -6690,7 +6690,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345370b0>",
+                    "id": "<src.operation.Operation object at 0x7f181adc3560>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_mgnify_path",
@@ -6698,7 +6698,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345371d0>",
+                    "id": "<src.operation.Operation object at 0x7f181adc3620>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_pdb_mmcif_path",
@@ -6706,7 +6706,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345372f0>",
+                    "id": "<src.operation.Operation object at 0x7f181adc37a0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_obsolete_path",
@@ -6714,7 +6714,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234537530>",
+                    "id": "<src.operation.Operation object at 0x7f181adc38c0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.helixfold3_maxit_src_path",
@@ -6722,7 +6722,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32346c76e0>",
+                    "id": "<src.operation.Operation object at 0x7f181adc3aa0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.uniref30_prefix",
@@ -6730,7 +6730,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f323487df70>",
+                    "id": "<src.operation.Operation object at 0x7f181adc2d80>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions = ch_versions.mix(PREPARE_ROSETTAFOLD2NA_DBS.out.versions)",
@@ -6738,7 +6738,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234534c20>",
+                    "id": "<src.operation.Operation object at 0x7f181adc1220>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_multiqc                              = ch_multiqc.mix(ROSETTAFOLD2NA.out.multiqc_report.collect())",
@@ -6746,7 +6746,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234535e50>",
+                    "id": "<src.operation.Operation object at 0x7f181adb3fb0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions                             = ch_versions.mix(ROSETTAFOLD2NA.out.versions)",
@@ -6754,15 +6754,15 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345349b0>",
+                    "id": "<src.operation.Operation object at 0x7f181adb34d0>",
                     "name": "",
                     "shape": "point",
-                    "xlabel": "ch_report_input                         = ch_report_input.mix(\n                                                        ROSETTAFOLD2NA.out.pdb.map_modified { \u00a4139854452576080_3\u00a4 }.join(ROSETTAFOLD2NA.out.msa).join(ROSETTAFOLD2NA.out.pae)\n                                                    )",
+                    "xlabel": "ch_report_input                         = ch_report_input.mix(\n                                                        ROSETTAFOLD2NA.out.pdb.map_modified { \u00a4139743003410112_3\u00a4 }.join(ROSETTAFOLD2NA.out.msa).join(ROSETTAFOLD2NA.out.pae)\n                                                    )",
                     "fillcolor": "white",
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234537770>",
+                    "id": "<src.operation.Operation object at 0x7f181adb26c0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_top_ranked_model                     = ch_top_ranked_model.mix(ROSETTAFOLD2NA.out.pdb)",
@@ -6770,7 +6770,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345816a0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac05ac0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold2na_db",
@@ -6778,7 +6778,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345819d0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac05d00>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold2na_bfd_path",
@@ -6786,7 +6786,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234581ac0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac05e20>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold2na_uniref30_path",
@@ -6794,7 +6794,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234581b80>",
+                    "id": "<src.operation.Operation object at 0x7f181ac05e80>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold2na_pdb100_path",
@@ -6802,7 +6802,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234581d60>",
+                    "id": "<src.operation.Operation object at 0x7f181ac06090>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold2na_rna_path",
@@ -6810,7 +6810,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234581e80>",
+                    "id": "<src.operation.Operation object at 0x7f181ac061b0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold2na_weights_path",
@@ -6818,7 +6818,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234581fa0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac062d0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold2na_bfd_link",
@@ -6826,7 +6826,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345820c0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac063f0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold2na_uniref30_link",
@@ -6834,7 +6834,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234582120>",
+                    "id": "<src.operation.Operation object at 0x7f181ac06510>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold2na_pdb100_link",
@@ -6842,7 +6842,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234582270>",
+                    "id": "<src.operation.Operation object at 0x7f181ac06630>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rosettafold2na_weights_link",
@@ -6850,7 +6850,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234582480>",
+                    "id": "<src.operation.Operation object at 0x7f181ac06750>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rfam_full_region_link",
@@ -6858,7 +6858,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345824e0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac06870>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rfam_cm_link",
@@ -6866,7 +6866,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345826f0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac06990>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rnacentral_rfam_annotations_link",
@@ -6874,7 +6874,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234701f10>",
+                    "id": "<src.operation.Operation object at 0x7f181ac06ab0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rnacentral_id_mapping_link",
@@ -6882,7 +6882,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234567b30>",
+                    "id": "<src.operation.Operation object at 0x7f181ac06bd0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.rnacentral_sequences_link",
@@ -6890,7 +6890,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234581b20>",
+                    "id": "<src.operation.Operation object at 0x7f181adefa10>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions = ch_versions.mix(PREPARE_BOLTZ_DBS.out.versions)",
@@ -6898,7 +6898,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234580740>",
+                    "id": "<src.operation.Operation object at 0x7f181ac06e70>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions = ch_versions.mix(PREPARE_COLABFOLD_DBS_BOLTZ.out.versions)",
@@ -6906,7 +6906,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234580a10>",
+                    "id": "<src.operation.Operation object at 0x7f181ac06540>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_multiqc                  = ch_multiqc.mix(BOLTZ.out.multiqc_report)",
@@ -6914,7 +6914,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234582840>",
+                    "id": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions                 = ch_versions.mix(BOLTZ.out.versions)",
@@ -6922,7 +6922,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345828d0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac06780>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_report_input             = ch_report_input.mix(\n            BOLTZ.out.pdb.join(BOLTZ.out.msa).join(BOLTZ.out.pae)\n        )",
@@ -6930,7 +6930,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3234582990>",
+                    "id": "<src.operation.Operation object at 0x7f181ac06ed0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_top_ranked_model         = ch_top_ranked_model.mix(BOLTZ.out.top_ranked_pdb)",
@@ -6938,7 +6938,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345c9670>",
+                    "id": "<src.operation.Operation object at 0x7f181ac55910>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.boltz_db",
@@ -6946,7 +6946,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e0680>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6cad0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.boltz_ccd_path",
@@ -6954,7 +6954,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e0830>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6cb30>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.boltz_model_path",
@@ -6962,7 +6962,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e0950>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6cd40>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.boltz2_aff_path",
@@ -6970,7 +6970,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e0a70>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6cda0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.boltz2_conf_path",
@@ -6978,7 +6978,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e0b90>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6cfb0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.boltz2_mols_path",
@@ -6986,7 +6986,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e0cb0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6d0d0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.boltz_ccd_link",
@@ -6994,7 +6994,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e0dd0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6d1f0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.boltz_model_link",
@@ -7002,7 +7002,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e0ec0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6d310>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.boltz2_aff_link",
@@ -7010,7 +7010,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e1010>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6d430>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.boltz2_conf_link",
@@ -7018,7 +7018,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e1190>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6d550>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.boltz2_mols_link",
@@ -7026,7 +7026,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e11f0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6d610>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_db",
@@ -7034,7 +7034,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e13a0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6d7c0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.use_msa_server",
@@ -7042,7 +7042,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e1460>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6d8e0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_alphafold2_params_path",
@@ -7050,7 +7050,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e1670>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6da00>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_envdb_path",
@@ -7058,7 +7058,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e1790>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6da60>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_uniref30_path",
@@ -7066,7 +7066,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e18b0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6dc70>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_alphafold2_params_link",
@@ -7074,7 +7074,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e19d0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6dd90>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_db_link",
@@ -7082,7 +7082,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e1a30>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6deb0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_uniref30_link",
@@ -7090,7 +7090,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e1c10>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6df10>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.colabfold_create_index",
@@ -7098,7 +7098,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345cb140>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6eb10>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.use_msa_server",
@@ -7106,7 +7106,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f3266cc6cf0>",
+                    "id": "<src.operation.Operation object at 0x7f1874207590>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_samplesheet       = samplesheet",
@@ -7114,7 +7114,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a6d20>",
+                    "id": "<src.operation.Operation object at 0x7f181af375c0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_multiqc           = channel.empty()",
@@ -7122,7 +7122,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a6db0>",
+                    "id": "<src.operation.Operation object at 0x7f181af37650>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_versions          = channel.empty()",
@@ -7130,7 +7130,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a6e40>",
+                    "id": "<src.operation.Operation object at 0x7f181af376e0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_report_input      = channel.empty()",
@@ -7138,7 +7138,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a6ed0>",
+                    "id": "<src.operation.Operation object at 0x7f181af37770>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_top_ranked_model  = channel.empty()",
@@ -7146,7 +7146,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a6f60>",
+                    "id": "<src.operation.Operation object at 0x7f181af37800>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "requested_modes      = params.mode.toLowerCase().split(',')",
@@ -7154,7 +7154,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a6ff0>",
+                    "id": "<src.operation.Operation object at 0x7f181af37890>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "requested_modes_size = requested_modes.size()",
@@ -7162,7 +7162,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a7080>",
+                    "id": "<src.operation.Operation object at 0x7f181af37920>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_dummy_file = channel.fromPath('$projectDir/assets/NO_FILE')",
@@ -7170,7 +7170,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a7110>",
+                    "id": "<src.operation.Operation object at 0x7f181af379b0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_dummy_file_pae = channel.fromPath('$projectDir/assets/NO_FILE_PAE')",
@@ -7178,7 +7178,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a71a0>",
+                    "id": "<src.operation.Operation object at 0x7f181af37a40>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_multiqc_config        = channel.fromPath('$projectDir/assets/multiqc_config.yml', checkIfExists: true).first()",
@@ -7186,7 +7186,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a7230>",
+                    "id": "<src.operation.Operation object at 0x7f181af37ad0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_multiqc_custom_config = params.multiqc_config ? channel.fromPath( params.multiqc_config ).first()  : channel.empty()",
@@ -7194,7 +7194,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a72c0>",
+                    "id": "<src.operation.Operation object at 0x7f181af37b60>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_multiqc_logo          = params.multiqc_logo   ? channel.fromPath( params.multiqc_logo ).first()    : channel.empty()",
@@ -7202,7 +7202,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a7350>",
+                    "id": "<src.operation.Operation object at 0x7f181af37bf0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_multiqc_methods_description = params.multiqc_methods_description ? file(params.multiqc_methods_description, checkIfExists: true) : file('$projectDir/assets/methods_description_template.yml', checkIfExists: true)",
@@ -7210,7 +7210,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a73e0>",
+                    "id": "<src.operation.Operation object at 0x7f181af37c80>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_report_template     = channel.value(file('$projectDir/assets/report_template.html', checkIfExists: true))",
@@ -7218,7 +7218,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32348a7560>",
+                    "id": "<src.operation.Operation object at 0x7f181af37dd0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "ch_comparison_template = channel.value(file('$projectDir/assets/comparison_template.html', checkIfExists: true))",
@@ -7226,7 +7226,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345c93a0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac57620>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.skip_visualisation",
@@ -7234,7 +7234,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e1a90>",
+                    "id": "<src.operation.Operation object at 0x7f181ac54f20>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.skip_foldseek",
@@ -7242,7 +7242,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e0bc0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac198b0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.foldseek_db",
@@ -7250,7 +7250,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e14f0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac3ef30>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.foldseek_db_path",
@@ -7258,7 +7258,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e20c0>",
+                    "id": "<src.operation.Operation object at 0x7f181ac3e390>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.skip_multiqc",
@@ -7266,7 +7266,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e1a00>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6cfe0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "params.outdir",
@@ -7276,2628 +7276,2628 @@
             ],
             "edges": [
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6db0>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
+                    "A": "<src.operation.Operation object at 0x7f181af37650>",
+                    "B": "<src.operation.Operation object at 0x7f181af64140>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7770>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
+                    "A": "<src.operation.Operation object at 0x7f181af64140>",
+                    "B": "<src.operation.Operation object at 0x7f181af64140>",
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                 },
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-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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                 },
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-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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                 },
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-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234581b20>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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+                    "B": "<src.operation.Operation object at 0x7f181af64140>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234580740>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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+                    "B": "<src.operation.Operation object at 0x7f181af64140>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234582840>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7770>",
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                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6d20>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7890>",
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+                    "B": "<src.operation.Operation object at 0x7f181af64050>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7890>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7890>",
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+                    "B": "<src.operation.Operation object at 0x7f181af64050>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323476b260>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7890>",
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+                    "B": "<src.operation.Operation object at 0x7f181af64050>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32347f4290>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7890>",
+                    "A": "<src.operation.Operation object at 0x7f181ae847d0>",
+                    "B": "<src.operation.Operation object at 0x7f181af64050>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234639d90>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7890>",
+                    "A": "<src.operation.Operation object at 0x7f181aec6000>",
+                    "B": "<src.operation.Operation object at 0x7f181af64050>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323464c740>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7890>",
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+                    "B": "<src.operation.Operation object at 0x7f181af64050>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323466fec0>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7890>",
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+                    "B": "<src.operation.Operation object at 0x7f181af64050>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234534c20>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7890>",
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+                    "B": "<src.operation.Operation object at 0x7f181af64050>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234580a10>",
-                    "B": "<src.operation.Operation object at 0x7f32348b7890>",
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+                    "B": "<src.operation.Operation object at 0x7f181af64050>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6db0>",
-                    "B": "<src.operation.Operation object at 0x7f32348b77a0>",
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+                    "B": "<src.operation.Operation object at 0x7f181af641d0>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7770>",
-                    "B": "<src.operation.Operation object at 0x7f32348b77a0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32348b77a0>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234769c10>",
-                    "B": "<src.operation.Operation object at 0x7f32348b77a0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32348b77a0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32348b77a0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32348b77a0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32348b77a0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32348b77a0>",
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                 },
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                 },
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                 {
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                 },
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                 {
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                 },
                 {
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32348b77a0>",
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                 },
                 {
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                 },
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32348b7920>",
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                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234769c10>",
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-                    "B": "<src.operation.Operation object at 0x7f3234769c10>",
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-                    "B": "<src.operation.Operation object at 0x7f3234769c10>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234769c10>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234769c10>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234769c10>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234769c10>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234769c10>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234582840>",
-                    "B": "<src.operation.Operation object at 0x7f3234769c10>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6d20>",
-                    "B": "<src.operation.Operation object at 0x7f323476b260>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7890>",
-                    "B": "<src.operation.Operation object at 0x7f323476b260>",
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                 {
-                    "A": "<src.operation.Operation object at 0x7f323476b260>",
-                    "B": "<src.operation.Operation object at 0x7f323476b260>",
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                 {
-                    "A": "<src.operation.Operation object at 0x7f32347f4290>",
-                    "B": "<src.operation.Operation object at 0x7f323476b260>",
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+                    "B": "<src.operation.Operation object at 0x7f181affeff0>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234639d90>",
-                    "B": "<src.operation.Operation object at 0x7f323476b260>",
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+                    "B": "<src.operation.Operation object at 0x7f181affeff0>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323464c740>",
-                    "B": "<src.operation.Operation object at 0x7f323476b260>",
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+                    "B": "<src.operation.Operation object at 0x7f181affeff0>",
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                 {
-                    "A": "<src.operation.Operation object at 0x7f323466fec0>",
-                    "B": "<src.operation.Operation object at 0x7f323476b260>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234534c20>",
-                    "B": "<src.operation.Operation object at 0x7f323476b260>",
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                 {
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-                    "B": "<src.operation.Operation object at 0x7f323476b260>",
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                 {
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-                    "B": "<src.operation.Operation object at 0x7f323476b2c0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323476b2c0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323476b2c0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323476b2c0>",
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                 },
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-                    "B": "<src.operation.Operation object at 0x7f323476b2c0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323476b2c0>",
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                 },
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-                    "B": "<src.operation.Operation object at 0x7f323476b2c0>",
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                 },
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-                    "B": "<src.operation.Operation object at 0x7f323476b2c0>",
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                 },
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-                    "B": "<src.operation.Operation object at 0x7f323476b2c0>",
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                 },
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                 {
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                 },
                 {
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                 },
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                 },
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                 {
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                 {
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                 {
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                 },
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-                    "B": "<src.operation.Operation object at 0x7f32347f43e0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f43e0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f43e0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f43e0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f43e0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f43e0>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234582840>",
-                    "B": "<src.operation.Operation object at 0x7f32347f43e0>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4290>",
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+                    "B": "<src.operation.Operation object at 0x7f181ae847d0>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7890>",
-                    "B": "<src.operation.Operation object at 0x7f32347f4290>",
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                     "label": "ch_multiqc"
                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4290>",
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                     "label": "ch_multiqc"
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                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4290>",
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                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4290>",
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                     "label": "ch_multiqc"
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                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4290>",
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                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4290>",
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                 {
-                    "A": "<src.operation.Operation object at 0x7f3234534c20>",
-                    "B": "<src.operation.Operation object at 0x7f32347f4290>",
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-                    "B": "<src.operation.Operation object at 0x7f32347f4290>",
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                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4410>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4410>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4410>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4410>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4410>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4410>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4410>",
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                 },
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-                    "B": "<src.operation.Operation object at 0x7f32347f4410>",
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                 },
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                 },
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                 },
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                 },
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                 },
                 {
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                 },
                 {
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                 },
                 {
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                 },
                 {
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4410>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f32347f4410>",
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                 },
                 {
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                 },
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                 {
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                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234580740>",
-                    "B": "<src.operation.Operation object at 0x7f3234639d60>",
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                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234582840>",
-                    "B": "<src.operation.Operation object at 0x7f3234639d60>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6d20>",
-                    "B": "<src.operation.Operation object at 0x7f3234639d90>",
+                    "A": "<src.operation.Operation object at 0x7f181af375c0>",
+                    "B": "<src.operation.Operation object at 0x7f181aec6000>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7890>",
-                    "B": "<src.operation.Operation object at 0x7f3234639d90>",
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                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323476b260>",
-                    "B": "<src.operation.Operation object at 0x7f3234639d90>",
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+                    "B": "<src.operation.Operation object at 0x7f181aec6000>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32347f4290>",
-                    "B": "<src.operation.Operation object at 0x7f3234639d90>",
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+                    "B": "<src.operation.Operation object at 0x7f181aec6000>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234639d90>",
-                    "B": "<src.operation.Operation object at 0x7f3234639d90>",
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                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323464c740>",
-                    "B": "<src.operation.Operation object at 0x7f3234639d90>",
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+                    "B": "<src.operation.Operation object at 0x7f181aec6000>",
                     "label": "ch_multiqc"
                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639d90>",
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+                    "B": "<src.operation.Operation object at 0x7f181aec6000>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234534c20>",
-                    "B": "<src.operation.Operation object at 0x7f3234639d90>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234580a10>",
-                    "B": "<src.operation.Operation object at 0x7f3234639d90>",
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                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6db0>",
-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234769c10>",
-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234581b20>",
-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639e80>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6e40>",
-                    "B": "<src.operation.Operation object at 0x7f3234639f10>",
+                    "A": "<src.operation.Operation object at 0x7f181af376e0>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7920>",
-                    "B": "<src.operation.Operation object at 0x7f3234639f10>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323476b2f0>",
-                    "B": "<src.operation.Operation object at 0x7f3234639f10>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639f10>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234639f10>",
-                    "B": "<src.operation.Operation object at 0x7f3234639f10>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639f10>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234672d50>",
-                    "B": "<src.operation.Operation object at 0x7f3234639f10>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32345349b0>",
-                    "B": "<src.operation.Operation object at 0x7f3234639f10>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234639f10>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a7110>",
-                    "B": "<src.operation.Operation object at 0x7f3234639f10>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a7080>",
-                    "B": "<src.operation.Operation object at 0x7f3234639f10>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6ed0>",
-                    "B": "<src.operation.Operation object at 0x7f3234639fd0>",
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                 },
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                 },
                 {
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                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6d20>",
-                    "B": "<src.operation.Operation object at 0x7f323464c740>",
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                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7890>",
-                    "B": "<src.operation.Operation object at 0x7f323464c740>",
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                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323476b260>",
-                    "B": "<src.operation.Operation object at 0x7f323464c740>",
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                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32347f4290>",
-                    "B": "<src.operation.Operation object at 0x7f323464c740>",
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                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234639d90>",
-                    "B": "<src.operation.Operation object at 0x7f323464c740>",
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                 {
-                    "A": "<src.operation.Operation object at 0x7f323464c740>",
-                    "B": "<src.operation.Operation object at 0x7f323464c740>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c740>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234534c20>",
-                    "B": "<src.operation.Operation object at 0x7f323464c740>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c740>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234582840>",
-                    "B": "<src.operation.Operation object at 0x7f323464c920>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6e40>",
-                    "B": "<src.operation.Operation object at 0x7f323464c980>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7920>",
-                    "B": "<src.operation.Operation object at 0x7f323464c980>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323476b2f0>",
-                    "B": "<src.operation.Operation object at 0x7f323464c980>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32347f42c0>",
-                    "B": "<src.operation.Operation object at 0x7f323464c980>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234639f10>",
-                    "B": "<src.operation.Operation object at 0x7f323464c980>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c980>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234672d50>",
-                    "B": "<src.operation.Operation object at 0x7f323464c980>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32345349b0>",
-                    "B": "<src.operation.Operation object at 0x7f323464c980>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464c980>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323464caa0>",
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                 {
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                 {
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                 {
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                 {
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                 {
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                 },
                 {
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                 {
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                 {
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                 {
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                 {
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-                    "B": "<src.operation.Operation object at 0x7f323466fec0>",
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                 {
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-                    "B": "<src.operation.Operation object at 0x7f323466fec0>",
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-                    "B": "<src.operation.Operation object at 0x7f323466fec0>",
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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                 },
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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                 },
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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                 },
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234672c30>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234672d50>",
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+                    "B": "<src.operation.Operation object at 0x7f181ad24080>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234672d50>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234672d50>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234672d50>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234639f10>",
-                    "B": "<src.operation.Operation object at 0x7f3234672d50>",
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                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234672d50>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234672d50>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234672d50>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32345828d0>",
-                    "B": "<src.operation.Operation object at 0x7f3234672d50>",
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f3234673650>",
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                 },
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-                    "B": "<src.operation.Operation object at 0x7f3234673650>",
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-                    "B": "<src.operation.Operation object at 0x7f3234673650>",
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                 {
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                 {
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                 },
                 {
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-                    "B": "<src.operation.Operation object at 0x7f323487df70>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234580740>",
-                    "B": "<src.operation.Operation object at 0x7f323487df70>",
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                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234582840>",
-                    "B": "<src.operation.Operation object at 0x7f323487df70>",
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                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6d20>",
-                    "B": "<src.operation.Operation object at 0x7f3234534c20>",
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                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7890>",
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                 {
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                 {
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                 {
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                 {
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                 {
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                 {
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-                    "A": "<src.operation.Operation object at 0x7f323487df70>",
-                    "B": "<src.operation.Operation object at 0x7f3234580740>",
+                    "A": "<src.operation.Operation object at 0x7f181adc2d80>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06e70>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234535e50>",
-                    "B": "<src.operation.Operation object at 0x7f3234580740>",
+                    "A": "<src.operation.Operation object at 0x7f181adb3fb0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06e70>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234581b20>",
-                    "B": "<src.operation.Operation object at 0x7f3234580740>",
+                    "A": "<src.operation.Operation object at 0x7f181adefa10>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06e70>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234580740>",
-                    "B": "<src.operation.Operation object at 0x7f3234580740>",
+                    "A": "<src.operation.Operation object at 0x7f181ac06e70>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06e70>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234582840>",
-                    "B": "<src.operation.Operation object at 0x7f3234580740>",
+                    "A": "<src.operation.Operation object at 0x7f181ac06fc0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06e70>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6d20>",
-                    "B": "<src.operation.Operation object at 0x7f3234580a10>",
+                    "A": "<src.operation.Operation object at 0x7f181af375c0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06540>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7890>",
-                    "B": "<src.operation.Operation object at 0x7f3234580a10>",
+                    "A": "<src.operation.Operation object at 0x7f181af64050>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06540>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323476b260>",
-                    "B": "<src.operation.Operation object at 0x7f3234580a10>",
+                    "A": "<src.operation.Operation object at 0x7f181affeff0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06540>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32347f4290>",
-                    "B": "<src.operation.Operation object at 0x7f3234580a10>",
+                    "A": "<src.operation.Operation object at 0x7f181ae847d0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06540>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234639d90>",
-                    "B": "<src.operation.Operation object at 0x7f3234580a10>",
+                    "A": "<src.operation.Operation object at 0x7f181aec6000>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06540>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323464c740>",
-                    "B": "<src.operation.Operation object at 0x7f3234580a10>",
+                    "A": "<src.operation.Operation object at 0x7f181aed8aa0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06540>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323466fec0>",
-                    "B": "<src.operation.Operation object at 0x7f3234580a10>",
+                    "A": "<src.operation.Operation object at 0x7f181ad0ff80>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06540>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234534c20>",
-                    "B": "<src.operation.Operation object at 0x7f3234580a10>",
+                    "A": "<src.operation.Operation object at 0x7f181adc1220>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06540>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234580a10>",
-                    "B": "<src.operation.Operation object at 0x7f3234580a10>",
+                    "A": "<src.operation.Operation object at 0x7f181ac06540>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06540>",
                     "label": "ch_multiqc"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6db0>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181af37650>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7770>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181af64140>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b77a0>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181af641d0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234769c10>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181afff050>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323476b2c0>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181afff110>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32347f43e0>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181ae84a10>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32347f4410>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181ae848f0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234639d60>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181aec61e0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234639e80>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181aec5fa0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323464c7d0>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181aed8ad0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323464c920>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181aed8920>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323464fa10>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181ad0f590>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234672c30>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181ae87f50>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323487df70>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181adc2d80>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234535e50>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181adb3fb0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234581b20>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181adefa10>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234580740>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181ac06e70>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234582840>",
-                    "B": "<src.operation.Operation object at 0x7f3234582840>",
+                    "A": "<src.operation.Operation object at 0x7f181ac06fc0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06fc0>",
                     "label": "ch_versions"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6e40>",
-                    "B": "<src.operation.Operation object at 0x7f32345828d0>",
+                    "A": "<src.operation.Operation object at 0x7f181af376e0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06780>",
                     "label": "ch_report_input"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7920>",
-                    "B": "<src.operation.Operation object at 0x7f32345828d0>",
+                    "A": "<src.operation.Operation object at 0x7f181af64260>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06780>",
                     "label": "ch_report_input"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323476b2f0>",
-                    "B": "<src.operation.Operation object at 0x7f32345828d0>",
+                    "A": "<src.operation.Operation object at 0x7f181afff230>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06780>",
                     "label": "ch_report_input"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32347f42c0>",
-                    "B": "<src.operation.Operation object at 0x7f32345828d0>",
+                    "A": "<src.operation.Operation object at 0x7f181ae84aa0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06780>",
                     "label": "ch_report_input"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234639f10>",
-                    "B": "<src.operation.Operation object at 0x7f32345828d0>",
+                    "A": "<src.operation.Operation object at 0x7f181aec6270>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06780>",
                     "label": "ch_report_input"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323464c980>",
-                    "B": "<src.operation.Operation object at 0x7f32345828d0>",
+                    "A": "<src.operation.Operation object at 0x7f181aed8bc0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06780>",
                     "label": "ch_report_input"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234672d50>",
-                    "B": "<src.operation.Operation object at 0x7f32345828d0>",
+                    "A": "<src.operation.Operation object at 0x7f181ad24080>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06780>",
                     "label": "ch_report_input"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32345349b0>",
-                    "B": "<src.operation.Operation object at 0x7f32345828d0>",
+                    "A": "<src.operation.Operation object at 0x7f181adb34d0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06780>",
                     "label": "ch_report_input"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32345828d0>",
-                    "B": "<src.operation.Operation object at 0x7f32345828d0>",
+                    "A": "<src.operation.Operation object at 0x7f181ac06780>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06780>",
                     "label": "ch_report_input"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6ed0>",
-                    "B": "<src.operation.Operation object at 0x7f3234582990>",
+                    "A": "<src.operation.Operation object at 0x7f181af37770>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06ed0>",
                     "label": "ch_top_ranked_model"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348b7a70>",
-                    "B": "<src.operation.Operation object at 0x7f3234582990>",
+                    "A": "<src.operation.Operation object at 0x7f181af64320>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06ed0>",
                     "label": "ch_top_ranked_model"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323476b440>",
-                    "B": "<src.operation.Operation object at 0x7f3234582990>",
+                    "A": "<src.operation.Operation object at 0x7f181afff2f0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06ed0>",
                     "label": "ch_top_ranked_model"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32347f4620>",
-                    "B": "<src.operation.Operation object at 0x7f3234582990>",
+                    "A": "<src.operation.Operation object at 0x7f181ae84b60>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06ed0>",
                     "label": "ch_top_ranked_model"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234639fd0>",
-                    "B": "<src.operation.Operation object at 0x7f3234582990>",
+                    "A": "<src.operation.Operation object at 0x7f181aec6330>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06ed0>",
                     "label": "ch_top_ranked_model"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f323464caa0>",
-                    "B": "<src.operation.Operation object at 0x7f3234582990>",
+                    "A": "<src.operation.Operation object at 0x7f181aed8c80>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06ed0>",
                     "label": "ch_top_ranked_model"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234673650>",
-                    "B": "<src.operation.Operation object at 0x7f3234582990>",
+                    "A": "<src.operation.Operation object at 0x7f181ad24140>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06ed0>",
                     "label": "ch_top_ranked_model"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234537770>",
-                    "B": "<src.operation.Operation object at 0x7f3234582990>",
+                    "A": "<src.operation.Operation object at 0x7f181adb26c0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06ed0>",
                     "label": "ch_top_ranked_model"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f3234582990>",
-                    "B": "<src.operation.Operation object at 0x7f3234582990>",
+                    "A": "<src.operation.Operation object at 0x7f181ac06ed0>",
+                    "B": "<src.operation.Operation object at 0x7f181ac06ed0>",
                     "label": "ch_top_ranked_model"
                 },
                 {
-                    "A": "<src.operation.Operation object at 0x7f32348a6f60>",
-                    "B": "<src.operation.Operation object at 0x7f32348a6ff0>",
+                    "A": "<src.operation.Operation object at 0x7f181af37800>",
+                    "B": "<src.operation.Operation object at 0x7f181af37890>",
                     "label": "requested_modes"
                 }
             ],
@@ -9905,7 +9905,7 @@
                 "PREPARE_ALPHAFOLD2_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f32661b5550>",
+                            "id": "<src.operation.Operation object at 0x7f187416e1b0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_bfd       = channel.value(file(bfd_path, checkIfExists: true))",
@@ -9913,7 +9913,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348cda60>",
+                            "id": "<src.operation.Operation object at 0x7f181af66270>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_small_bfd = channel.value(file('${projectDir}/assets/dummy_db'))",
@@ -9921,7 +9921,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323487dbe0>",
+                            "id": "<src.operation.Operation object at 0x7f18740cdd90>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_bfd       = channel.value(file('${projectDir}/assets/dummy_db'))",
@@ -9929,7 +9929,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348cdb20>",
+                            "id": "<src.operation.Operation object at 0x7f181af662d0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_small_bfd = channel.value(file(small_bfd_path, checkIfExists: true))",
@@ -9937,7 +9937,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348cd3d0>",
+                            "id": "<src.operation.Operation object at 0x7f181af4faa0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_params         = channel.value(file(alphafold2_params_path, checkIfExists: true))",
@@ -9945,7 +9945,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348cd400>",
+                            "id": "<src.operation.Operation object at 0x7f181af4f830>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_mgnify         = channel.value(file(mgnify_path, checkIfExists: true))",
@@ -9953,7 +9953,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348cd490>",
+                            "id": "<src.operation.Operation object at 0x7f181af4fb30>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pdb70          = channel.value(file(pdb70_path, checkIfExists: true))",
@@ -9961,7 +9961,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348cd3a0>",
+                            "id": "<src.operation.Operation object at 0x7f187416df70>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_mmcif_files    = channel.value(file(pdb_mmcif_path, checkIfExists: true))",
@@ -9969,7 +9969,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348cd6a0>",
+                            "id": "<src.operation.Operation object at 0x7f181af4f500>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_obsolete       = channel.value(file(pdb_obsolete_path, type: 'file', checkIfExists: true))",
@@ -9977,7 +9977,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348cd730>",
+                            "id": "<src.operation.Operation object at 0x7f181af4de50>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniref30       = channel.value(file(alphafold2_uniref30_path, type: 'any', checkIfExists: true))",
@@ -9985,7 +9985,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348cd7c0>",
+                            "id": "<src.operation.Operation object at 0x7f181af660c0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniref90       = channel.value(file(uniref90_path, checkIfExists: true))",
@@ -9993,7 +9993,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348cd850>",
+                            "id": "<src.operation.Operation object at 0x7f181af65e80>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pdb_seqres     = channel.value(file(pdb_seqres_path, checkIfExists: true))",
@@ -10001,7 +10001,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b5610>",
+                            "id": "<src.operation.Operation object at 0x7f181af66150>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniprot        = channel.value(file(uniprot_path, checkIfExists: true))",
@@ -10009,15 +10009,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347231d0>",
+                            "id": "<src.operation.Operation object at 0x7f181afb3710>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_bfd =  ARIA2_BFD.out.db.map_modified { \u00a4139854438097520_0\u00a4 }",
+                            "xlabel": "ch_bfd =  ARIA2_BFD.out.db.map_modified { \u00a4139743003602304_0\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "id": "<src.operation.Operation object at 0x7f181afb3740>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_BFD.out.versions)",
@@ -10025,7 +10025,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348f9dc0>",
+                            "id": "<src.operation.Operation object at 0x7f181afc9310>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_small_bfd = ARIA2_SMALL_BFD.out.db",
@@ -10033,7 +10033,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "id": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_SMALL_BFD.out.versions)",
@@ -10041,15 +10041,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b6180>",
+                            "id": "<src.operation.Operation object at 0x7f181af66810>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_params = ARIA2_ALPHAFOLD2_PARAMS.out.db.map_modified { \u00a4139854438097520_1\u00a4 }",
+                            "xlabel": "ch_params = ARIA2_ALPHAFOLD2_PARAMS.out.db.map_modified { \u00a4139743003602304_1\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce150>",
+                            "id": "<src.operation.Operation object at 0x7f181af66840>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_ALPHAFOLD2_PARAMS.out.versions)",
@@ -10057,7 +10057,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce210>",
+                            "id": "<src.operation.Operation object at 0x7f181af668d0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_mgnify = ARIA2_MGNIFY.out.db",
@@ -10065,7 +10065,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce2a0>",
+                            "id": "<src.operation.Operation object at 0x7f181af66960>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_MGNIFY.out.versions)",
@@ -10073,15 +10073,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce330>",
+                            "id": "<src.operation.Operation object at 0x7f181af669f0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_pdb70 = ARIA2_PDB70.out.db.map_modified { \u00a4139854438097520_2\u00a4 }",
+                            "xlabel": "ch_pdb70 = ARIA2_PDB70.out.db.map_modified { \u00a4139743003602304_2\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce0f0>",
+                            "id": "<src.operation.Operation object at 0x7f181af66a80>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_PDB70.out.versions)",
@@ -10089,7 +10089,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce480>",
+                            "id": "<src.operation.Operation object at 0x7f181af66b10>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_mmcif_files = DOWNLOAD_PDBMMCIF.out.ch_db",
@@ -10097,7 +10097,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce510>",
+                            "id": "<src.operation.Operation object at 0x7f181af66ba0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions    = ch_versions.mix(DOWNLOAD_PDBMMCIF.out.versions)",
@@ -10105,7 +10105,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce5a0>",
+                            "id": "<src.operation.Operation object at 0x7f181af66c30>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_obsolete = ARIA2_OBSOLETE.out.db",
@@ -10113,7 +10113,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce6f0>",
+                            "id": "<src.operation.Operation object at 0x7f181af66cc0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_OBSOLETE.out.versions)",
@@ -10121,15 +10121,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce780>",
+                            "id": "<src.operation.Operation object at 0x7f181af66d50>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_uniref30 = ARIA2_UNIREF30.out.db.map_modified { \u00a4139854438097520_3\u00a4 }",
+                            "xlabel": "ch_uniref30 = ARIA2_UNIREF30.out.db.map_modified { \u00a4139743003602304_3\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce840>",
+                            "id": "<src.operation.Operation object at 0x7f181af66de0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNIREF30.out.versions)",
@@ -10137,7 +10137,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce660>",
+                            "id": "<src.operation.Operation object at 0x7f181af66e70>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniref90 = ARIA2_UNIREF90.out.db",
@@ -10145,7 +10145,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce8d0>",
+                            "id": "<src.operation.Operation object at 0x7f181af66f00>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNIREF90.out.versions)",
@@ -10153,15 +10153,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce960>",
+                            "id": "<src.operation.Operation object at 0x7f181af66f90>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_pdb_seqres = ARIA2_PDB_SEQRES.out.downloaded_file.map_modified { \u00a4139854438097520_4\u00a4 }",
+                            "xlabel": "ch_pdb_seqres = ARIA2_PDB_SEQRES.out.downloaded_file.map_modified { \u00a4139743003602304_4\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ce9f0>",
+                            "id": "<src.operation.Operation object at 0x7f181af67020>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_PDB_SEQRES.out.versions)",
@@ -10169,7 +10169,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348cea80>",
+                            "id": "<src.operation.Operation object at 0x7f181af670b0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNIPROT_SPROT.out.versions)",
@@ -10177,7 +10177,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ceb10>",
+                            "id": "<src.operation.Operation object at 0x7f181af667e0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNIPROT_TREMBL.out.versions)",
@@ -10185,7 +10185,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ceba0>",
+                            "id": "<src.operation.Operation object at 0x7f181af67200>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniprot  = COMBINE_UNIPROT.out.ch_db",
@@ -10193,7 +10193,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "id": "<src.operation.Operation object at 0x7f181af67350>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(COMBINE_UNIPROT.out.versions)",
@@ -10201,7 +10201,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348e3c20>",
+                            "id": "<src.process.Process object at 0x7f181af77f80>",
                             "name": "DOWNLOAD_PDBMMCIF",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -10209,7 +10209,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234720440>",
+                            "id": "<src.process.Process object at 0x7f181afb08f0>",
                             "name": "ARIA2_PDB_SEQRES",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -10217,7 +10217,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323473ea50>",
+                            "id": "<src.operation.Operation object at 0x7f181afcafc0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "[\n                [:],\n                pdb_seqres_link\n            ]",
@@ -10225,7 +10225,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234723260>",
+                            "id": "<src.process.Process object at 0x7f181afb35c0>",
                             "name": "COMBINE_UNIPROT",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -10233,7 +10233,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348a5610>",
+                            "id": "<src.operation.Operation object at 0x7f181af35eb0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_bfd        = channel.value([])",
@@ -10241,7 +10241,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348ccfe0>",
+                            "id": "<src.operation.Operation object at 0x7f181af65e50>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_small_bfd  = channel.value([])",
@@ -10249,7 +10249,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348cd040>",
+                            "id": "<src.operation.Operation object at 0x7f181af65f70>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions   = channel.empty()",
@@ -10259,948 +10259,948 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348cd040>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181af65f70>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347231a0>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181afb3740>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce3f0>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181afc92e0>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce150>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66840>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce2a0>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66960>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce0f0>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66a80>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce510>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66ba0>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce6f0>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66cc0>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce840>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66de0>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce8d0>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66f00>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce9f0>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181af67020>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348cea80>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181af670b0>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ceb10>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181af667e0>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348cecf0>",
-                            "B": "<src.operation.Operation object at 0x7f32347231a0>",
+                            "A": "<src.operation.Operation object at 0x7f181af67350>",
+                            "B": "<src.operation.Operation object at 0x7f181afb3740>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348cd040>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181af65f70>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347231a0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181afb3740>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce3f0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181afc92e0>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce150>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66840>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce2a0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66960>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce0f0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66a80>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce510>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66ba0>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce6f0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66cc0>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce840>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66de0>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce8d0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66f00>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce9f0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181af67020>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348cea80>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181af670b0>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ceb10>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181af667e0>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348cecf0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce3f0>",
+                            "A": "<src.operation.Operation object at 0x7f181af67350>",
+                            "B": "<src.operation.Operation object at 0x7f181afc92e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348cd040>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce150>",
+                            "A": "<src.operation.Operation object at 0x7f181af65f70>",
+                            "B": "<src.operation.Operation object at 0x7f181af66840>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347231a0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce150>",
+                            "A": "<src.operation.Operation object at 0x7f181afb3740>",
+                            "B": "<src.operation.Operation object at 0x7f181af66840>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce3f0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce150>",
+                            "A": "<src.operation.Operation object at 0x7f181afc92e0>",
+                            "B": "<src.operation.Operation object at 0x7f181af66840>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce150>",
-                            "B": "<src.operation.Operation object at 0x7f32348ce150>",
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+                            "B": "<src.operation.Operation object at 0x7f181af667e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce0f0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ceb10>",
+                            "A": "<src.operation.Operation object at 0x7f181af66a80>",
+                            "B": "<src.operation.Operation object at 0x7f181af667e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce510>",
-                            "B": "<src.operation.Operation object at 0x7f32348ceb10>",
+                            "A": "<src.operation.Operation object at 0x7f181af66ba0>",
+                            "B": "<src.operation.Operation object at 0x7f181af667e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce6f0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ceb10>",
+                            "A": "<src.operation.Operation object at 0x7f181af66cc0>",
+                            "B": "<src.operation.Operation object at 0x7f181af667e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce840>",
-                            "B": "<src.operation.Operation object at 0x7f32348ceb10>",
+                            "A": "<src.operation.Operation object at 0x7f181af66de0>",
+                            "B": "<src.operation.Operation object at 0x7f181af667e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce8d0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ceb10>",
+                            "A": "<src.operation.Operation object at 0x7f181af66f00>",
+                            "B": "<src.operation.Operation object at 0x7f181af667e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce9f0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ceb10>",
+                            "A": "<src.operation.Operation object at 0x7f181af67020>",
+                            "B": "<src.operation.Operation object at 0x7f181af667e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348cea80>",
-                            "B": "<src.operation.Operation object at 0x7f32348ceb10>",
+                            "A": "<src.operation.Operation object at 0x7f181af670b0>",
+                            "B": "<src.operation.Operation object at 0x7f181af667e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ceb10>",
-                            "B": "<src.operation.Operation object at 0x7f32348ceb10>",
+                            "A": "<src.operation.Operation object at 0x7f181af667e0>",
+                            "B": "<src.operation.Operation object at 0x7f181af667e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348cecf0>",
-                            "B": "<src.operation.Operation object at 0x7f32348ceb10>",
+                            "A": "<src.operation.Operation object at 0x7f181af67350>",
+                            "B": "<src.operation.Operation object at 0x7f181af667e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234723260>",
-                            "B": "<src.operation.Operation object at 0x7f32348ceba0>",
+                            "A": "<src.process.Process object at 0x7f181afb35c0>",
+                            "B": "<src.operation.Operation object at 0x7f181af67200>",
                             "label": "COMBINE_UNIPROT.out.ch_db"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234723260>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.process.Process object at 0x7f181afb35c0>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "COMBINE_UNIPROT.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348cd040>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181af65f70>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347231a0>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181afb3740>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce3f0>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181afc92e0>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce150>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66840>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce2a0>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66960>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce0f0>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66a80>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce510>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66ba0>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce6f0>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66cc0>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce840>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66de0>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce8d0>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181af66f00>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ce9f0>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181af67020>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348cea80>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181af670b0>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348ceb10>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181af667e0>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348cecf0>",
-                            "B": "<src.operation.Operation object at 0x7f32348cecf0>",
+                            "A": "<src.operation.Operation object at 0x7f181af67350>",
+                            "B": "<src.operation.Operation object at 0x7f181af67350>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323473ea50>",
-                            "B": "<src.process.Process object at 0x7f3234720440>",
+                            "A": "<src.operation.Operation object at 0x7f181afcafc0>",
+                            "B": "<src.process.Process object at 0x7f181afb08f0>",
                             "label": ""
                         }
                     ],
@@ -11208,23 +11208,23 @@
                         "ARIA2_UNCOMPRESS": {
                             "nodes": [
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32676b1eb0>",
+                                    "id": "<src.operation.Operation object at 0x7f181af924e0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139854438166704_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743003699648_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32348e2330>",
+                                    "id": "<src.operation.Operation object at 0x7f181af92810>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139854438166704_0\u00a4 }",
+                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139743003699648_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347224b0>",
+                                    "id": "<src.process.Process object at 0x7f181afb2990>",
                                     "name": "UNTAR",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -11232,15 +11232,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32661ca3c0>",
+                                    "id": "<src.operation.Operation object at 0x7f181af92900>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139854438166704_0\u00a4 }",
+                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139743003699648_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234722780>",
+                                    "id": "<src.process.Process object at 0x7f181afb2b70>",
                                     "name": "GUNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -11248,15 +11248,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32661da930>",
+                                    "id": "<src.operation.Operation object at 0x7f1874022720>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139854438166704_0\u00a4 }",
+                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139743003699648_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234722a20>",
+                                    "id": "<src.process.Process object at 0x7f181afb2e10>",
                                     "name": "ZSTD_DECOMPRESS",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -11264,15 +11264,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32661cac60>",
+                                    "id": "<src.operation.Operation object at 0x7f18741cb0b0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139854438166704_1\u00a4 }",
+                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139743003699648_1\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234722d20>",
+                                    "id": "<src.process.Process object at 0x7f181afb3200>",
                                     "name": "UNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -11280,15 +11280,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234982ff0>",
+                                    "id": "<src.operation.Operation object at 0x7f187405af90>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139854438166704_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743003699648_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234721ee0>",
+                                    "id": "<src.operation.Operation object at 0x7f181afb23c0>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "ch_db = channel.empty()",
@@ -11296,7 +11296,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347220f0>",
+                                    "id": "<src.process.Process object at 0x7f181afb25a0>",
                                     "name": "ARIA2",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -11304,7 +11304,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234722180>",
+                                    "id": "<src.operation.Operation object at 0x7f181afb1b80>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "[\n            [:],\n            source_url\n        ]",
@@ -11314,58 +11314,58 @@
                             ],
                             "edges": [
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347220f0>",
-                                    "B": "<src.operation.Operation object at 0x7f32676b1eb0>",
+                                    "A": "<src.process.Process object at 0x7f181afb25a0>",
+                                    "B": "<src.operation.Operation object at 0x7f181af924e0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347220f0>",
-                                    "B": "<src.process.Process object at 0x7f32347224b0>",
+                                    "A": "<src.process.Process object at 0x7f181afb25a0>",
+                                    "B": "<src.process.Process object at 0x7f181afb2990>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347224b0>",
-                                    "B": "<src.operation.Operation object at 0x7f32348e2330>",
+                                    "A": "<src.process.Process object at 0x7f181afb2990>",
+                                    "B": "<src.operation.Operation object at 0x7f181af92810>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347220f0>",
-                                    "B": "<src.process.Process object at 0x7f3234722780>",
+                                    "A": "<src.process.Process object at 0x7f181afb25a0>",
+                                    "B": "<src.process.Process object at 0x7f181afb2b70>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f3234722780>",
-                                    "B": "<src.operation.Operation object at 0x7f32661ca3c0>",
+                                    "A": "<src.process.Process object at 0x7f181afb2b70>",
+                                    "B": "<src.operation.Operation object at 0x7f181af92900>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347220f0>",
-                                    "B": "<src.process.Process object at 0x7f3234722a20>",
+                                    "A": "<src.process.Process object at 0x7f181afb25a0>",
+                                    "B": "<src.process.Process object at 0x7f181afb2e10>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f3234722a20>",
-                                    "B": "<src.operation.Operation object at 0x7f32661da930>",
+                                    "A": "<src.process.Process object at 0x7f181afb2e10>",
+                                    "B": "<src.operation.Operation object at 0x7f1874022720>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347220f0>",
-                                    "B": "<src.process.Process object at 0x7f3234722d20>",
+                                    "A": "<src.process.Process object at 0x7f181afb25a0>",
+                                    "B": "<src.process.Process object at 0x7f181afb3200>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f3234722d20>",
-                                    "B": "<src.operation.Operation object at 0x7f32661cac60>",
+                                    "A": "<src.process.Process object at 0x7f181afb3200>",
+                                    "B": "<src.operation.Operation object at 0x7f18741cb0b0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347220f0>",
-                                    "B": "<src.operation.Operation object at 0x7f3234982ff0>",
+                                    "A": "<src.process.Process object at 0x7f181afb25a0>",
+                                    "B": "<src.operation.Operation object at 0x7f187405af90>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.operation.Operation object at 0x7f3234722180>",
-                                    "B": "<src.process.Process object at 0x7f32347220f0>",
+                                    "A": "<src.operation.Operation object at 0x7f181afb1b80>",
+                                    "B": "<src.process.Process object at 0x7f181afb25a0>",
                                     "label": ""
                                 }
                             ],
@@ -11376,7 +11376,7 @@
                 "ALPHAFOLD2": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234755970>",
+                            "id": "<src.operation.Operation object at 0x7f181afe9f10>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pdb            = ch_pdb.mix(RUN_ALPHAFOLD2.out.pdb)",
@@ -11384,7 +11384,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347559a0>",
+                            "id": "<src.operation.Operation object at 0x7f181afe9f40>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_top_ranked_pdb = ch_top_ranked_pdb.mix(RUN_ALPHAFOLD2.out.top_ranked_pdb)",
@@ -11392,7 +11392,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347559d0>",
+                            "id": "<src.operation.Operation object at 0x7f181afe9fa0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_msa            = ch_msa.mix(RUN_ALPHAFOLD2.out.msa)",
@@ -11400,7 +11400,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234755a60>",
+                            "id": "<src.operation.Operation object at 0x7f181afea030>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pae            = ch_pae.mix(RUN_ALPHAFOLD2.out.pae)",
@@ -11408,7 +11408,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234755bb0>",
+                            "id": "<src.operation.Operation object at 0x7f181afea180>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions       = ch_versions.mix(RUN_ALPHAFOLD2.out.versions)",
@@ -11416,7 +11416,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234755d90>",
+                            "id": "<src.process.Process object at 0x7f181afea300>",
                             "name": "RUN_ALPHAFOLD2",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -11424,15 +11424,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234755d00>",
+                            "id": "<src.operation.Operation object at 0x7f181afe9b80>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_ALPHAFOLD2.out.multiqc.map_modified { \u00a4139854438154992_1\u00a4 }.toSortedList().map_modified { \u00a4139854438154992_2\u00a4 }.set { ch_multiqc_report }",
+                            "xlabel": "RUN_ALPHAFOLD2.out.multiqc.map_modified { \u00a4139743003606720_1\u00a4 }.toSortedList().map_modified { \u00a4139743003606720_2\u00a4 }.set { ch_multiqc_report }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234756780>",
+                            "id": "<src.operation.Operation object at 0x7f181afeaba0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(RUN_ALPHAFOLD2_MSA.out.versions)",
@@ -11440,7 +11440,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234756840>",
+                            "id": "<src.operation.Operation object at 0x7f181afeae10>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_top_ranked_pdb = ch_top_ranked_pdb.mix(RUN_ALPHAFOLD2_PRED.out.top_ranked_pdb)",
@@ -11448,7 +11448,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347567b0>",
+                            "id": "<src.operation.Operation object at 0x7f181afea2d0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pdb            = ch_pdb.mix(RUN_ALPHAFOLD2_PRED.out.pdb)",
@@ -11456,7 +11456,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234756600>",
+                            "id": "<src.operation.Operation object at 0x7f181afea330>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_msa            = ch_msa.mix(RUN_ALPHAFOLD2_PRED.out.msa)",
@@ -11464,7 +11464,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347566c0>",
+                            "id": "<src.operation.Operation object at 0x7f181afeac90>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pae            = ch_pae.mix(RUN_ALPHAFOLD2_PRED.out.pae)",
@@ -11472,7 +11472,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347569f0>",
+                            "id": "<src.operation.Operation object at 0x7f181afeafc0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions       = ch_versions.mix(RUN_ALPHAFOLD2_PRED.out.versions)",
@@ -11480,7 +11480,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234756bd0>",
+                            "id": "<src.process.Process object at 0x7f181afeb140>",
                             "name": "RUN_ALPHAFOLD2_MSA",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -11488,7 +11488,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234756c60>",
+                            "id": "<src.process.Process object at 0x7f181afeb200>",
                             "name": "RUN_ALPHAFOLD2_PRED",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -11496,23 +11496,23 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234756ab0>",
+                            "id": "<src.operation.Operation object at 0x7f181afeb260>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_samplesheet_prepared.join(RUN_ALPHAFOLD2_MSA.out.features).map_modified { \u00a4139854438154992_3\u00a4 }.set { ch_fasta_features }",
+                            "xlabel": "ch_samplesheet_prepared.join(RUN_ALPHAFOLD2_MSA.out.features).map_modified { \u00a4139743003606720_3\u00a4 }.set { ch_fasta_features }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234756d80>",
+                            "id": "<src.operation.Operation object at 0x7f181afeb350>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_ALPHAFOLD2_PRED.out.multiqc.map_modified { \u00a4139854438154992_1\u00a4 }.toSortedList().map_modified { \u00a4139854438154992_2\u00a4 }.set { ch_multiqc_report }",
+                            "xlabel": "RUN_ALPHAFOLD2_PRED.out.multiqc.map_modified { \u00a4139743003606720_1\u00a4 }.toSortedList().map_modified { \u00a4139743003606720_2\u00a4 }.set { ch_multiqc_report }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b4e30>",
+                            "id": "<src.operation.Operation object at 0x7f181afc97f0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pdb            = channel.empty()",
@@ -11520,7 +11520,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234754e00>",
+                            "id": "<src.operation.Operation object at 0x7f181afe9820>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_top_ranked_pdb = channel.empty()",
@@ -11528,7 +11528,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234754fe0>",
+                            "id": "<src.operation.Operation object at 0x7f181afe9970>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_msa            = channel.empty()",
@@ -11536,7 +11536,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234755070>",
+                            "id": "<src.operation.Operation object at 0x7f181afe9a00>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pae            = channel.empty()",
@@ -11544,7 +11544,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234755100>",
+                            "id": "<src.operation.Operation object at 0x7f181afe9a90>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_multiqc_report = channel.empty()",
@@ -11552,345 +11552,345 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347551c0>",
+                            "id": "<src.operation.Operation object at 0x7f181afb1bb0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_top_ranked_pdb_final = ch_top_ranked_pdb.map_modified { \u00a4139854438154992_6\u00a4 }",
+                            "xlabel": "ch_top_ranked_pdb_final = ch_top_ranked_pdb.map_modified { \u00a4139743003606720_6\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234755280>",
+                            "id": "<src.operation.Operation object at 0x7f181af93530>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_samplesheet.map_modified { \u00a4139854438154992_0\u00a4 }.set { ch_samplesheet_prepared }",
+                            "xlabel": "ch_samplesheet.map_modified { \u00a4139743003606720_0\u00a4 }.set { ch_samplesheet_prepared }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347553a0>",
+                            "id": "<src.operation.Operation object at 0x7f181afcb0e0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_pdb.map_modified { \u00a4139854438154992_4\u00a4 }.set { ch_pdb_final }",
+                            "xlabel": "ch_pdb.map_modified { \u00a4139743003606720_4\u00a4 }.set { ch_pdb_final }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347554c0>",
+                            "id": "<src.operation.Operation object at 0x7f181afc9f70>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_msa.map_modified { \u00a4139854438154992_5\u00a4 }.set { ch_msa_final }",
+                            "xlabel": "ch_msa.map_modified { \u00a4139743003606720_5\u00a4 }.set { ch_msa_final }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347555e0>",
+                            "id": "<src.operation.Operation object at 0x7f181afc8e00>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_pae.map_modified { \u00a4139854438154992_5\u00a4 }.set { ch_pae_final }",
+                            "xlabel": "ch_pae.map_modified { \u00a4139743003606720_5\u00a4 }.set { ch_pae_final }",
                             "fillcolor": "white",
                             "artificial": false
                         }
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f3234755d90>",
-                            "B": "<src.operation.Operation object at 0x7f3234755970>",
+                            "A": "<src.process.Process object at 0x7f181afea300>",
+                            "B": "<src.operation.Operation object at 0x7f181afe9f10>",
                             "label": "RUN_ALPHAFOLD2.out.pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b4e30>",
-                            "B": "<src.operation.Operation object at 0x7f3234755970>",
+                            "A": "<src.operation.Operation object at 0x7f181afc97f0>",
+                            "B": "<src.operation.Operation object at 0x7f181afe9f10>",
                             "label": "ch_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234755970>",
-                            "B": "<src.operation.Operation object at 0x7f3234755970>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9f10>",
+                            "B": "<src.operation.Operation object at 0x7f181afe9f10>",
                             "label": "ch_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347567b0>",
-                            "B": "<src.operation.Operation object at 0x7f3234755970>",
+                            "A": "<src.operation.Operation object at 0x7f181afea2d0>",
+                            "B": "<src.operation.Operation object at 0x7f181afe9f10>",
                             "label": "ch_pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234755d90>",
-                            "B": "<src.operation.Operation object at 0x7f32347559a0>",
+                            "A": "<src.process.Process object at 0x7f181afea300>",
+                            "B": "<src.operation.Operation object at 0x7f181afe9f40>",
                             "label": "RUN_ALPHAFOLD2.out.top_ranked_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234754e00>",
-                            "B": "<src.operation.Operation object at 0x7f32347559a0>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9820>",
+                            "B": "<src.operation.Operation object at 0x7f181afe9f40>",
                             "label": "ch_top_ranked_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347559a0>",
-                            "B": "<src.operation.Operation object at 0x7f32347559a0>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9f40>",
+                            "B": "<src.operation.Operation object at 0x7f181afe9f40>",
                             "label": "ch_top_ranked_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234756840>",
-                            "B": "<src.operation.Operation object at 0x7f32347559a0>",
+                            "A": "<src.operation.Operation object at 0x7f181afeae10>",
+                            "B": "<src.operation.Operation object at 0x7f181afe9f40>",
                             "label": "ch_top_ranked_pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234755d90>",
-                            "B": "<src.operation.Operation object at 0x7f32347559d0>",
+                            "A": "<src.process.Process object at 0x7f181afea300>",
+                            "B": "<src.operation.Operation object at 0x7f181afe9fa0>",
                             "label": "RUN_ALPHAFOLD2.out.msa"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234754fe0>",
-                            "B": "<src.operation.Operation object at 0x7f32347559d0>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9970>",
+                            "B": "<src.operation.Operation object at 0x7f181afe9fa0>",
                             "label": "ch_msa"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347559d0>",
-                            "B": "<src.operation.Operation object at 0x7f32347559d0>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9fa0>",
+                            "B": "<src.operation.Operation object at 0x7f181afe9fa0>",
                             "label": "ch_msa"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234756600>",
-                            "B": "<src.operation.Operation object at 0x7f32347559d0>",
+                            "A": "<src.operation.Operation object at 0x7f181afea330>",
+                            "B": "<src.operation.Operation object at 0x7f181afe9fa0>",
                             "label": "ch_msa"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234755d90>",
-                            "B": "<src.operation.Operation object at 0x7f3234755a60>",
+                            "A": "<src.process.Process object at 0x7f181afea300>",
+                            "B": "<src.operation.Operation object at 0x7f181afea030>",
                             "label": "RUN_ALPHAFOLD2.out.pae"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234755070>",
-                            "B": "<src.operation.Operation object at 0x7f3234755a60>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9a00>",
+                            "B": "<src.operation.Operation object at 0x7f181afea030>",
                             "label": "ch_pae"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234755a60>",
-                            "B": "<src.operation.Operation object at 0x7f3234755a60>",
+                            "A": "<src.operation.Operation object at 0x7f181afea030>",
+                            "B": "<src.operation.Operation object at 0x7f181afea030>",
                             "label": "ch_pae"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347566c0>",
-                            "B": "<src.operation.Operation object at 0x7f3234755a60>",
+                            "A": "<src.operation.Operation object at 0x7f181afeac90>",
+                            "B": "<src.operation.Operation object at 0x7f181afea030>",
                             "label": "ch_pae"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234755d90>",
-                            "B": "<src.operation.Operation object at 0x7f3234755bb0>",
+                            "A": "<src.process.Process object at 0x7f181afea300>",
+                            "B": "<src.operation.Operation object at 0x7f181afea180>",
                             "label": "RUN_ALPHAFOLD2.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234755bb0>",
-                            "B": "<src.operation.Operation object at 0x7f3234755bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181afea180>",
+                            "B": "<src.operation.Operation object at 0x7f181afea180>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234756780>",
-                            "B": "<src.operation.Operation object at 0x7f3234755bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181afeaba0>",
+                            "B": "<src.operation.Operation object at 0x7f181afea180>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347569f0>",
-                            "B": "<src.operation.Operation object at 0x7f3234755bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181afeafc0>",
+                            "B": "<src.operation.Operation object at 0x7f181afea180>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234755d90>",
-                            "B": "<src.operation.Operation object at 0x7f3234755d00>",
+                            "A": "<src.process.Process object at 0x7f181afea300>",
+                            "B": "<src.operation.Operation object at 0x7f181afe9b80>",
                             "label": "RUN_ALPHAFOLD2.out.multiqc"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234756bd0>",
-                            "B": "<src.operation.Operation object at 0x7f3234756780>",
+                            "A": "<src.process.Process object at 0x7f181afeb140>",
+                            "B": "<src.operation.Operation object at 0x7f181afeaba0>",
                             "label": "RUN_ALPHAFOLD2_MSA.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234755bb0>",
-                            "B": "<src.operation.Operation object at 0x7f3234756780>",
+                            "A": "<src.operation.Operation object at 0x7f181afea180>",
+                            "B": "<src.operation.Operation object at 0x7f181afeaba0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234756780>",
-                            "B": "<src.operation.Operation object at 0x7f3234756780>",
+                            "A": "<src.operation.Operation object at 0x7f181afeaba0>",
+                            "B": "<src.operation.Operation object at 0x7f181afeaba0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347569f0>",
-                            "B": "<src.operation.Operation object at 0x7f3234756780>",
+                            "A": "<src.operation.Operation object at 0x7f181afeafc0>",
+                            "B": "<src.operation.Operation object at 0x7f181afeaba0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234756c60>",
-                            "B": "<src.operation.Operation object at 0x7f3234756840>",
+                            "A": "<src.process.Process object at 0x7f181afeb200>",
+                            "B": "<src.operation.Operation object at 0x7f181afeae10>",
                             "label": "RUN_ALPHAFOLD2_PRED.out.top_ranked_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234754e00>",
-                            "B": "<src.operation.Operation object at 0x7f3234756840>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9820>",
+                            "B": "<src.operation.Operation object at 0x7f181afeae10>",
                             "label": "ch_top_ranked_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347559a0>",
-                            "B": "<src.operation.Operation object at 0x7f3234756840>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9f40>",
+                            "B": "<src.operation.Operation object at 0x7f181afeae10>",
                             "label": "ch_top_ranked_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234756840>",
-                            "B": "<src.operation.Operation object at 0x7f3234756840>",
+                            "A": "<src.operation.Operation object at 0x7f181afeae10>",
+                            "B": "<src.operation.Operation object at 0x7f181afeae10>",
                             "label": "ch_top_ranked_pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234756c60>",
-                            "B": "<src.operation.Operation object at 0x7f32347567b0>",
+                            "A": "<src.process.Process object at 0x7f181afeb200>",
+                            "B": "<src.operation.Operation object at 0x7f181afea2d0>",
                             "label": "RUN_ALPHAFOLD2_PRED.out.pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b4e30>",
-                            "B": "<src.operation.Operation object at 0x7f32347567b0>",
+                            "A": "<src.operation.Operation object at 0x7f181afc97f0>",
+                            "B": "<src.operation.Operation object at 0x7f181afea2d0>",
                             "label": "ch_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234755970>",
-                            "B": "<src.operation.Operation object at 0x7f32347567b0>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9f10>",
+                            "B": "<src.operation.Operation object at 0x7f181afea2d0>",
                             "label": "ch_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347567b0>",
-                            "B": "<src.operation.Operation object at 0x7f32347567b0>",
+                            "A": "<src.operation.Operation object at 0x7f181afea2d0>",
+                            "B": "<src.operation.Operation object at 0x7f181afea2d0>",
                             "label": "ch_pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234756c60>",
-                            "B": "<src.operation.Operation object at 0x7f3234756600>",
+                            "A": "<src.process.Process object at 0x7f181afeb200>",
+                            "B": "<src.operation.Operation object at 0x7f181afea330>",
                             "label": "RUN_ALPHAFOLD2_PRED.out.msa"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234754fe0>",
-                            "B": "<src.operation.Operation object at 0x7f3234756600>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9970>",
+                            "B": "<src.operation.Operation object at 0x7f181afea330>",
                             "label": "ch_msa"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347559d0>",
-                            "B": "<src.operation.Operation object at 0x7f3234756600>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9fa0>",
+                            "B": "<src.operation.Operation object at 0x7f181afea330>",
                             "label": "ch_msa"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234756600>",
-                            "B": "<src.operation.Operation object at 0x7f3234756600>",
+                            "A": "<src.operation.Operation object at 0x7f181afea330>",
+                            "B": "<src.operation.Operation object at 0x7f181afea330>",
                             "label": "ch_msa"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234756c60>",
-                            "B": "<src.operation.Operation object at 0x7f32347566c0>",
+                            "A": "<src.process.Process object at 0x7f181afeb200>",
+                            "B": "<src.operation.Operation object at 0x7f181afeac90>",
                             "label": "RUN_ALPHAFOLD2_PRED.out.pae"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234755070>",
-                            "B": "<src.operation.Operation object at 0x7f32347566c0>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9a00>",
+                            "B": "<src.operation.Operation object at 0x7f181afeac90>",
                             "label": "ch_pae"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234755a60>",
-                            "B": "<src.operation.Operation object at 0x7f32347566c0>",
+                            "A": "<src.operation.Operation object at 0x7f181afea030>",
+                            "B": "<src.operation.Operation object at 0x7f181afeac90>",
                             "label": "ch_pae"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347566c0>",
-                            "B": "<src.operation.Operation object at 0x7f32347566c0>",
+                            "A": "<src.operation.Operation object at 0x7f181afeac90>",
+                            "B": "<src.operation.Operation object at 0x7f181afeac90>",
                             "label": "ch_pae"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234756c60>",
-                            "B": "<src.operation.Operation object at 0x7f32347569f0>",
+                            "A": "<src.process.Process object at 0x7f181afeb200>",
+                            "B": "<src.operation.Operation object at 0x7f181afeafc0>",
                             "label": "RUN_ALPHAFOLD2_PRED.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234755bb0>",
-                            "B": "<src.operation.Operation object at 0x7f32347569f0>",
+                            "A": "<src.operation.Operation object at 0x7f181afea180>",
+                            "B": "<src.operation.Operation object at 0x7f181afeafc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234756780>",
-                            "B": "<src.operation.Operation object at 0x7f32347569f0>",
+                            "A": "<src.operation.Operation object at 0x7f181afeaba0>",
+                            "B": "<src.operation.Operation object at 0x7f181afeafc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347569f0>",
-                            "B": "<src.operation.Operation object at 0x7f32347569f0>",
+                            "A": "<src.operation.Operation object at 0x7f181afeafc0>",
+                            "B": "<src.operation.Operation object at 0x7f181afeafc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234756bd0>",
-                            "B": "<src.operation.Operation object at 0x7f3234756ab0>",
+                            "A": "<src.process.Process object at 0x7f181afeb140>",
+                            "B": "<src.operation.Operation object at 0x7f181afeb260>",
                             "label": "RUN_ALPHAFOLD2_MSA.out.features"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234755280>",
-                            "B": "<src.operation.Operation object at 0x7f3234756ab0>",
+                            "A": "<src.operation.Operation object at 0x7f181af93530>",
+                            "B": "<src.operation.Operation object at 0x7f181afeb260>",
                             "label": "ch_samplesheet_prepared"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234756c60>",
-                            "B": "<src.operation.Operation object at 0x7f3234756d80>",
+                            "A": "<src.process.Process object at 0x7f181afeb200>",
+                            "B": "<src.operation.Operation object at 0x7f181afeb350>",
                             "label": "RUN_ALPHAFOLD2_PRED.out.multiqc"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234754e00>",
-                            "B": "<src.operation.Operation object at 0x7f32347551c0>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9820>",
+                            "B": "<src.operation.Operation object at 0x7f181afb1bb0>",
                             "label": "ch_top_ranked_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347559a0>",
-                            "B": "<src.operation.Operation object at 0x7f32347551c0>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9f40>",
+                            "B": "<src.operation.Operation object at 0x7f181afb1bb0>",
                             "label": "ch_top_ranked_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234756840>",
-                            "B": "<src.operation.Operation object at 0x7f32347551c0>",
+                            "A": "<src.operation.Operation object at 0x7f181afeae10>",
+                            "B": "<src.operation.Operation object at 0x7f181afb1bb0>",
                             "label": "ch_top_ranked_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b4e30>",
-                            "B": "<src.operation.Operation object at 0x7f32347553a0>",
+                            "A": "<src.operation.Operation object at 0x7f181afc97f0>",
+                            "B": "<src.operation.Operation object at 0x7f181afcb0e0>",
                             "label": "ch_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234755970>",
-                            "B": "<src.operation.Operation object at 0x7f32347553a0>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9f10>",
+                            "B": "<src.operation.Operation object at 0x7f181afcb0e0>",
                             "label": "ch_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347567b0>",
-                            "B": "<src.operation.Operation object at 0x7f32347553a0>",
+                            "A": "<src.operation.Operation object at 0x7f181afea2d0>",
+                            "B": "<src.operation.Operation object at 0x7f181afcb0e0>",
                             "label": "ch_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234754fe0>",
-                            "B": "<src.operation.Operation object at 0x7f32347554c0>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9970>",
+                            "B": "<src.operation.Operation object at 0x7f181afc9f70>",
                             "label": "ch_msa"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347559d0>",
-                            "B": "<src.operation.Operation object at 0x7f32347554c0>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9fa0>",
+                            "B": "<src.operation.Operation object at 0x7f181afc9f70>",
                             "label": "ch_msa"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234756600>",
-                            "B": "<src.operation.Operation object at 0x7f32347554c0>",
+                            "A": "<src.operation.Operation object at 0x7f181afea330>",
+                            "B": "<src.operation.Operation object at 0x7f181afc9f70>",
                             "label": "ch_msa"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234755070>",
-                            "B": "<src.operation.Operation object at 0x7f32347555e0>",
+                            "A": "<src.operation.Operation object at 0x7f181afe9a00>",
+                            "B": "<src.operation.Operation object at 0x7f181afc8e00>",
                             "label": "ch_pae"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234755a60>",
-                            "B": "<src.operation.Operation object at 0x7f32347555e0>",
+                            "A": "<src.operation.Operation object at 0x7f181afea030>",
+                            "B": "<src.operation.Operation object at 0x7f181afc8e00>",
                             "label": "ch_pae"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347566c0>",
-                            "B": "<src.operation.Operation object at 0x7f32347555e0>",
+                            "A": "<src.operation.Operation object at 0x7f181afeac90>",
+                            "B": "<src.operation.Operation object at 0x7f181afc8e00>",
                             "label": "ch_pae"
                         }
                     ],
@@ -11899,7 +11899,7 @@
                 "PREPARE_ALPHAFOLD3_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348a4a70>",
+                            "id": "<src.operation.Operation object at 0x7f18740588f0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_params         = channel.value(file(alphafold3_params_path, checkIfExists: true))",
@@ -11907,7 +11907,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234784bf0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae18a70>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_small_bfd      = channel.value(file(small_bfd_path, checkIfExists: true))",
@@ -11915,7 +11915,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234784bc0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae18a40>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_mgnify         = channel.value(file(mgnify_path, checkIfExists: true))",
@@ -11923,7 +11923,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234784c80>",
+                            "id": "<src.operation.Operation object at 0x7f181ae18b00>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_mmcif          = channel.value(file(pdb_mmcif_path, checkIfExists: true))",
@@ -11931,7 +11931,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234784d10>",
+                            "id": "<src.operation.Operation object at 0x7f181ae18890>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniref90       = channel.value(file(uniref90_path, checkIfExists: true))",
@@ -11939,7 +11939,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234784da0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae18c50>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pdb_seqres     = channel.value(file(pdb_seqres_path, checkIfExists: true))",
@@ -11947,7 +11947,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234784e30>",
+                            "id": "<src.operation.Operation object at 0x7f181ae18ce0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniprot        = channel.value(file(uniprot_path, checkIfExists: true))",
@@ -11955,7 +11955,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234784ec0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae18d70>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_rnacentral     = channel.value(file(rnacentral_active_seq_path))",
@@ -11963,7 +11963,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234784f50>",
+                            "id": "<src.operation.Operation object at 0x7f181ae18e00>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_nt_rna         = channel.value(file(nt_rna_2023_02_23_path))",
@@ -11971,7 +11971,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347850a0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae18f50>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_rfam           = channel.value(file(rfam_path))",
@@ -11979,7 +11979,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234785550>",
+                            "id": "<src.operation.Operation object at 0x7f181ae193d0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_small_bfd = ARIA2_SMALL_BFD.out.db",
@@ -11987,7 +11987,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347855b0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae192e0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions  = ch_versions.mix(ARIA2_SMALL_BFD.out.versions)",
@@ -11995,7 +11995,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234785490>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19340>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_params = channel.value(file(alphafold3_params_path, checkIfExists: true))",
@@ -12003,7 +12003,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234785610>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19580>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_mgnify   = ARIA2_MGNIFY.out.db",
@@ -12011,7 +12011,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347856a0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae194f0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_MGNIFY.out.versions)",
@@ -12019,7 +12019,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234785730>",
+                            "id": "<src.operation.Operation object at 0x7f181ae196a0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_mmcif    = ARIA2_MMCIF.out.db",
@@ -12027,7 +12027,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347857c0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19610>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_MMCIF.out.versions)",
@@ -12035,7 +12035,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234785850>",
+                            "id": "<src.operation.Operation object at 0x7f181afe97f0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_mmcif    = DOWNLOAD_PDBMMCIF_AF3.out.ch_db",
@@ -12043,7 +12043,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347858e0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19730>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(DOWNLOAD_PDBMMCIF_AF3.out.versions)",
@@ -12051,7 +12051,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234785970>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19910>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniref90 = ARIA2_UNIREF90.out.db",
@@ -12059,7 +12059,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234785a00>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19880>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNIREF90.out.versions)",
@@ -12067,7 +12067,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234785a90>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19a30>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pdb_seqres = ARIA2_PDB_SEQRES.out.db",
@@ -12075,7 +12075,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234785b20>",
+                            "id": "<src.operation.Operation object at 0x7f181ae199a0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions   = ch_versions.mix(ARIA2_PDB_SEQRES.out.versions)",
@@ -12083,7 +12083,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234785bb0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19b50>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniprot  = ARIA2_UNIPROT.out.db",
@@ -12091,7 +12091,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234785c40>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19ac0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNIPROT.out.versions)",
@@ -12099,7 +12099,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234785cd0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19c70>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_rnacentral = ARIA2_RNACENTRAL_ACTIVE_SEQ.out.db",
@@ -12107,7 +12107,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f326699a9c0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19be0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions   = ch_versions.mix(ARIA2_RNACENTRAL_ACTIVE_SEQ.out.versions)",
@@ -12115,7 +12115,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323476a720>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19d90>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_nt_rna = ARIA2_NT_RNA_2023_02_23.out.db",
@@ -12123,7 +12123,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234769b50>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19d00>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_NT_RNA_2023_02_23.out.versions)",
@@ -12131,7 +12131,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234982cc0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19eb0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_rfam = ARIA2_RFAM.out.db",
@@ -12139,7 +12139,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348e2ba0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae19f70>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_RFAM.out.versions)",
@@ -12147,7 +12147,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234791550>",
+                            "id": "<src.process.Process object at 0x7f181ae25a60>",
                             "name": "DOWNLOAD_PDBMMCIF_AF3",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -12155,7 +12155,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32661b4a40>",
+                            "id": "<src.operation.Operation object at 0x7f181afc88c0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions   = channel.empty()",
@@ -12165,563 +12165,563 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.operation.Operation object at 0x7f32661b4a40>",
-                            "B": "<src.operation.Operation object at 0x7f32347855b0>",
+                            "A": "<src.operation.Operation object at 0x7f181afc88c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae192e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347855b0>",
-                            "B": "<src.operation.Operation object at 0x7f32347855b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae192e0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae192e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347856a0>",
-                            "B": "<src.operation.Operation object at 0x7f32347855b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae194f0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae192e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347857c0>",
-                            "B": "<src.operation.Operation object at 0x7f32347855b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19610>",
+                            "B": "<src.operation.Operation object at 0x7f181ae192e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347858e0>",
-                            "B": "<src.operation.Operation object at 0x7f32347855b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19730>",
+                            "B": "<src.operation.Operation object at 0x7f181ae192e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234785a00>",
-                            "B": "<src.operation.Operation object at 0x7f32347855b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19880>",
+                            "B": "<src.operation.Operation object at 0x7f181ae192e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234785b20>",
-                            "B": "<src.operation.Operation object at 0x7f32347855b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae199a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae192e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234785c40>",
-                            "B": "<src.operation.Operation object at 0x7f32347855b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19ac0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae192e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f326699a9c0>",
-                            "B": "<src.operation.Operation object at 0x7f32347855b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19be0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae192e0>",
                             "label": "ch_versions"
                         },
                         {
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                         {
-                            "A": "<src.operation.Operation object at 0x7f3234785c40>",
-                            "B": "<src.operation.Operation object at 0x7f3234785c40>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19ac0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19ac0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f326699a9c0>",
-                            "B": "<src.operation.Operation object at 0x7f3234785c40>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19be0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19ac0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234769b50>",
-                            "B": "<src.operation.Operation object at 0x7f3234785c40>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19d00>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19ac0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348e2ba0>",
-                            "B": "<src.operation.Operation object at 0x7f3234785c40>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19f70>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19ac0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32661b4a40>",
-                            "B": "<src.operation.Operation object at 0x7f326699a9c0>",
+                            "A": "<src.operation.Operation object at 0x7f181afc88c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19be0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347855b0>",
-                            "B": "<src.operation.Operation object at 0x7f326699a9c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae192e0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19be0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347856a0>",
-                            "B": "<src.operation.Operation object at 0x7f326699a9c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae194f0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19be0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347857c0>",
-                            "B": "<src.operation.Operation object at 0x7f326699a9c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19610>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19be0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347858e0>",
-                            "B": "<src.operation.Operation object at 0x7f326699a9c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19730>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19be0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234785a00>",
-                            "B": "<src.operation.Operation object at 0x7f326699a9c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19880>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19be0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234785b20>",
-                            "B": "<src.operation.Operation object at 0x7f326699a9c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae199a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19be0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234785c40>",
-                            "B": "<src.operation.Operation object at 0x7f326699a9c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19ac0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19be0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f326699a9c0>",
-                            "B": "<src.operation.Operation object at 0x7f326699a9c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19be0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19be0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234769b50>",
-                            "B": "<src.operation.Operation object at 0x7f326699a9c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19d00>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19be0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348e2ba0>",
-                            "B": "<src.operation.Operation object at 0x7f326699a9c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19f70>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19be0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32661b4a40>",
-                            "B": "<src.operation.Operation object at 0x7f3234769b50>",
+                            "A": "<src.operation.Operation object at 0x7f181afc88c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19d00>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347855b0>",
-                            "B": "<src.operation.Operation object at 0x7f3234769b50>",
+                            "A": "<src.operation.Operation object at 0x7f181ae192e0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19d00>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347856a0>",
-                            "B": "<src.operation.Operation object at 0x7f3234769b50>",
+                            "A": "<src.operation.Operation object at 0x7f181ae194f0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19d00>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347857c0>",
-                            "B": "<src.operation.Operation object at 0x7f3234769b50>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19610>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19d00>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347858e0>",
-                            "B": "<src.operation.Operation object at 0x7f3234769b50>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19730>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19d00>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234785a00>",
-                            "B": "<src.operation.Operation object at 0x7f3234769b50>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19880>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19d00>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234785b20>",
-                            "B": "<src.operation.Operation object at 0x7f3234769b50>",
+                            "A": "<src.operation.Operation object at 0x7f181ae199a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19d00>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234785c40>",
-                            "B": "<src.operation.Operation object at 0x7f3234769b50>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19ac0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19d00>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f326699a9c0>",
-                            "B": "<src.operation.Operation object at 0x7f3234769b50>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19be0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19d00>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234769b50>",
-                            "B": "<src.operation.Operation object at 0x7f3234769b50>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19d00>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19d00>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348e2ba0>",
-                            "B": "<src.operation.Operation object at 0x7f3234769b50>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19f70>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19d00>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32661b4a40>",
-                            "B": "<src.operation.Operation object at 0x7f32348e2ba0>",
+                            "A": "<src.operation.Operation object at 0x7f181afc88c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19f70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347855b0>",
-                            "B": "<src.operation.Operation object at 0x7f32348e2ba0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae192e0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19f70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347856a0>",
-                            "B": "<src.operation.Operation object at 0x7f32348e2ba0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae194f0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19f70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347857c0>",
-                            "B": "<src.operation.Operation object at 0x7f32348e2ba0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19610>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19f70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347858e0>",
-                            "B": "<src.operation.Operation object at 0x7f32348e2ba0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19730>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19f70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234785a00>",
-                            "B": "<src.operation.Operation object at 0x7f32348e2ba0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19880>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19f70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234785b20>",
-                            "B": "<src.operation.Operation object at 0x7f32348e2ba0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae199a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19f70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234785c40>",
-                            "B": "<src.operation.Operation object at 0x7f32348e2ba0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19ac0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19f70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f326699a9c0>",
-                            "B": "<src.operation.Operation object at 0x7f32348e2ba0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19be0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19f70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234769b50>",
-                            "B": "<src.operation.Operation object at 0x7f32348e2ba0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19d00>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19f70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348e2ba0>",
-                            "B": "<src.operation.Operation object at 0x7f32348e2ba0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae19f70>",
+                            "B": "<src.operation.Operation object at 0x7f181ae19f70>",
                             "label": "ch_versions"
                         }
                     ],
@@ -12729,23 +12729,23 @@
                         "ARIA2_UNCOMPRESS": {
                             "nodes": [
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234769160>",
+                                    "id": "<src.operation.Operation object at 0x7f181af35490>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139854450109776_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743003832928_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32347694c0>",
+                                    "id": "<src.operation.Operation object at 0x7f181ae3d790>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139854450109776_0\u00a4 }",
+                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139743003832928_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347c95e0>",
+                                    "id": "<src.process.Process object at 0x7f181ae5d910>",
                                     "name": "UNTAR",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -12753,15 +12753,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32347b17f0>",
+                                    "id": "<src.operation.Operation object at 0x7f181af75820>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139854450109776_0\u00a4 }",
+                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139743003832928_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347c9880>",
+                                    "id": "<src.process.Process object at 0x7f181ae5dc10>",
                                     "name": "GUNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -12769,15 +12769,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32348f9ac0>",
+                                    "id": "<src.operation.Operation object at 0x7f181ae3dc40>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139854450109776_0\u00a4 }",
+                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139743003832928_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347c9b20>",
+                                    "id": "<src.process.Process object at 0x7f181ae5de20>",
                                     "name": "ZSTD_DECOMPRESS",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -12785,15 +12785,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32348e1ca0>",
+                                    "id": "<src.operation.Operation object at 0x7f181affe030>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139854450109776_1\u00a4 }",
+                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139743003832928_1\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347c9e20>",
+                                    "id": "<src.process.Process object at 0x7f181ae5e0f0>",
                                     "name": "UNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -12801,15 +12801,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234791ee0>",
+                                    "id": "<src.operation.Operation object at 0x7f181ae26360>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139854450109776_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743003832928_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32347c9040>",
+                                    "id": "<src.operation.Operation object at 0x7f181ae5c350>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "ch_db = channel.empty()",
@@ -12817,7 +12817,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347c9250>",
+                                    "id": "<src.process.Process object at 0x7f181ae5d520>",
                                     "name": "ARIA2",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -12825,7 +12825,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32347c9310>",
+                                    "id": "<src.operation.Operation object at 0x7f181ae5d5b0>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "[\n            [:],\n            source_url\n        ]",
@@ -12835,58 +12835,58 @@
                             ],
                             "edges": [
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c9250>",
-                                    "B": "<src.operation.Operation object at 0x7f3234769160>",
+                                    "A": "<src.process.Process object at 0x7f181ae5d520>",
+                                    "B": "<src.operation.Operation object at 0x7f181af35490>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c9250>",
-                                    "B": "<src.process.Process object at 0x7f32347c95e0>",
+                                    "A": "<src.process.Process object at 0x7f181ae5d520>",
+                                    "B": "<src.process.Process object at 0x7f181ae5d910>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c95e0>",
-                                    "B": "<src.operation.Operation object at 0x7f32347694c0>",
+                                    "A": "<src.process.Process object at 0x7f181ae5d910>",
+                                    "B": "<src.operation.Operation object at 0x7f181ae3d790>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c9250>",
-                                    "B": "<src.process.Process object at 0x7f32347c9880>",
+                                    "A": "<src.process.Process object at 0x7f181ae5d520>",
+                                    "B": "<src.process.Process object at 0x7f181ae5dc10>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c9880>",
-                                    "B": "<src.operation.Operation object at 0x7f32347b17f0>",
+                                    "A": "<src.process.Process object at 0x7f181ae5dc10>",
+                                    "B": "<src.operation.Operation object at 0x7f181af75820>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c9250>",
-                                    "B": "<src.process.Process object at 0x7f32347c9b20>",
+                                    "A": "<src.process.Process object at 0x7f181ae5d520>",
+                                    "B": "<src.process.Process object at 0x7f181ae5de20>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c9b20>",
-                                    "B": "<src.operation.Operation object at 0x7f32348f9ac0>",
+                                    "A": "<src.process.Process object at 0x7f181ae5de20>",
+                                    "B": "<src.operation.Operation object at 0x7f181ae3dc40>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c9250>",
-                                    "B": "<src.process.Process object at 0x7f32347c9e20>",
+                                    "A": "<src.process.Process object at 0x7f181ae5d520>",
+                                    "B": "<src.process.Process object at 0x7f181ae5e0f0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c9e20>",
-                                    "B": "<src.operation.Operation object at 0x7f32348e1ca0>",
+                                    "A": "<src.process.Process object at 0x7f181ae5e0f0>",
+                                    "B": "<src.operation.Operation object at 0x7f181affe030>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347c9250>",
-                                    "B": "<src.operation.Operation object at 0x7f3234791ee0>",
+                                    "A": "<src.process.Process object at 0x7f181ae5d520>",
+                                    "B": "<src.operation.Operation object at 0x7f181ae26360>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.operation.Operation object at 0x7f32347c9310>",
-                                    "B": "<src.process.Process object at 0x7f32347c9250>",
+                                    "A": "<src.operation.Operation object at 0x7f181ae5d5b0>",
+                                    "B": "<src.process.Process object at 0x7f181ae5d520>",
                                     "label": ""
                                 }
                             ],
@@ -12897,7 +12897,7 @@
                 "ALPHAFOLD3": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347c9790>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7c980>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pdb_final      = channel.empty()",
@@ -12905,7 +12905,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347c9e50>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7c8c0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_top_ranked_pdb = channel.empty()",
@@ -12913,7 +12913,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347c9940>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7c9b0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_msa_final      = channel.empty()",
@@ -12921,7 +12921,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347c9640>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7ca40>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_multiqc_report = channel.empty()",
@@ -12929,7 +12929,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347c9280>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7cad0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions       = ch_versions.mix(FASTA_TO_ALPHAFOLD3_JSON.out.versions)",
@@ -12937,7 +12937,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347b1a00>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7cb60>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(RUN_ALPHAFOLD3.out.versions)",
@@ -12945,7 +12945,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347b2d80>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7cbf0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(MMCIF2PDB_MODELS.out.versions)",
@@ -12953,7 +12953,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347e8530>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7cc80>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(MMCIF2PDB_TOP_RANKED.out.versions)",
@@ -12961,7 +12961,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32347e8680>",
+                            "id": "<src.process.Process object at 0x7f181ae7ce90>",
                             "name": "FASTA_TO_ALPHAFOLD3_JSON",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -12969,7 +12969,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32347e86e0>",
+                            "id": "<src.process.Process object at 0x7f181ae7cf50>",
                             "name": "RUN_ALPHAFOLD3",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -12977,7 +12977,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32347e87a0>",
+                            "id": "<src.process.Process object at 0x7f181ae5e150>",
                             "name": "MMCIF2PDB_MODELS",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -12985,15 +12985,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347e9700>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7dc40>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_ALPHAFOLD3.out.cif.groupTuple().map_modified { \u00a4139854438155472_0\u00a4 }",
+                            "xlabel": "RUN_ALPHAFOLD3.out.cif.groupTuple().map_modified { \u00a4139743003689136_0\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32347e8860>",
+                            "id": "<src.process.Process object at 0x7f181ae5d880>",
                             "name": "MMCIF2PDB_TOP_RANKED",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -13001,203 +13001,203 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347e8650>",
+                            "id": "<src.operation.Operation object at 0x7f181ae5dbe0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_ALPHAFOLD3.out.cif.groupTuple().map_modified { \u00a4139854438155472_0\u00a4 }",
+                            "xlabel": "RUN_ALPHAFOLD3.out.cif.groupTuple().map_modified { \u00a4139743003689136_0\u00a4 }",
                             "fillcolor": "",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347e8a70>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7cf80>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "MMCIF2PDB_MODELS.out.pdb.map_modified { \u00a4139854438155472_1\u00a4 }.set { ch_pdb_final }",
+                            "xlabel": "MMCIF2PDB_MODELS.out.pdb.map_modified { \u00a4139743003689136_1\u00a4 }.set { ch_pdb_final }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347e8b90>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7d0a0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "MMCIF2PDB_TOP_RANKED.out.pdb.map_modified { \u00a4139854438155472_2\u00a4 }.set { ch_top_ranked_pdb }",
+                            "xlabel": "MMCIF2PDB_TOP_RANKED.out.pdb.map_modified { \u00a4139743003689136_2\u00a4 }.set { ch_top_ranked_pdb }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347e8cb0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7d1c0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_ALPHAFOLD3.out.msa.map_modified { \u00a4139854438155472_2\u00a4 }.set { ch_msa_final }",
+                            "xlabel": "RUN_ALPHAFOLD3.out.msa.map_modified { \u00a4139743003689136_2\u00a4 }.set { ch_msa_final }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347e8e00>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7d2e0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_ALPHAFOLD3.out.multiqc.map_modified { \u00a4139854438155472_3\u00a4 }.toSortedList().map_modified { \u00a4139854438155472_4\u00a4 }.set { ch_multiqc_report }",
+                            "xlabel": "RUN_ALPHAFOLD3.out.multiqc.map_modified { \u00a4139743003689136_3\u00a4 }.toSortedList().map_modified { \u00a4139743003689136_4\u00a4 }.set { ch_multiqc_report }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347e8f20>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7d400>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_ALPHAFOLD3.out.pae.map_modified { \u00a4139854438155472_2\u00a4 }.set { ch_pae_final }",
+                            "xlabel": "RUN_ALPHAFOLD3.out.pae.map_modified { \u00a4139743003689136_2\u00a4 }.set { ch_pae_final }",
                             "fillcolor": "white",
                             "artificial": false
                         }
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f32347e8680>",
-                            "B": "<src.operation.Operation object at 0x7f32347c9280>",
+                            "A": "<src.process.Process object at 0x7f181ae7ce90>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cad0>",
                             "label": "FASTA_TO_ALPHAFOLD3_JSON.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347c9280>",
-                            "B": "<src.operation.Operation object at 0x7f32347c9280>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cad0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cad0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347b1a00>",
-                            "B": "<src.operation.Operation object at 0x7f32347c9280>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cb60>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cad0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347b2d80>",
-                            "B": "<src.operation.Operation object at 0x7f32347c9280>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cbf0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cad0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347e8530>",
-                            "B": "<src.operation.Operation object at 0x7f32347c9280>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cc80>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cad0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e86e0>",
-                            "B": "<src.operation.Operation object at 0x7f32347b1a00>",
+                            "A": "<src.process.Process object at 0x7f181ae7cf50>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cb60>",
                             "label": "RUN_ALPHAFOLD3.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347c9280>",
-                            "B": "<src.operation.Operation object at 0x7f32347b1a00>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cad0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cb60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347b1a00>",
-                            "B": "<src.operation.Operation object at 0x7f32347b1a00>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cb60>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cb60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347b2d80>",
-                            "B": "<src.operation.Operation object at 0x7f32347b1a00>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cbf0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cb60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347e8530>",
-                            "B": "<src.operation.Operation object at 0x7f32347b1a00>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cc80>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cb60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e87a0>",
-                            "B": "<src.operation.Operation object at 0x7f32347b2d80>",
+                            "A": "<src.process.Process object at 0x7f181ae5e150>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cbf0>",
                             "label": "MMCIF2PDB_MODELS.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347c9280>",
-                            "B": "<src.operation.Operation object at 0x7f32347b2d80>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cad0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cbf0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347b1a00>",
-                            "B": "<src.operation.Operation object at 0x7f32347b2d80>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cb60>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cbf0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347b2d80>",
-                            "B": "<src.operation.Operation object at 0x7f32347b2d80>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cbf0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cbf0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347e8530>",
-                            "B": "<src.operation.Operation object at 0x7f32347b2d80>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cc80>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cbf0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e8860>",
-                            "B": "<src.operation.Operation object at 0x7f32347e8530>",
+                            "A": "<src.process.Process object at 0x7f181ae5d880>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cc80>",
                             "label": "MMCIF2PDB_TOP_RANKED.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347c9280>",
-                            "B": "<src.operation.Operation object at 0x7f32347e8530>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cad0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cc80>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347b1a00>",
-                            "B": "<src.operation.Operation object at 0x7f32347e8530>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cb60>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cc80>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347b2d80>",
-                            "B": "<src.operation.Operation object at 0x7f32347e8530>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cbf0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cc80>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347e8530>",
-                            "B": "<src.operation.Operation object at 0x7f32347e8530>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7cc80>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cc80>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e8680>",
-                            "B": "<src.process.Process object at 0x7f32347e86e0>",
+                            "A": "<src.process.Process object at 0x7f181ae7ce90>",
+                            "B": "<src.process.Process object at 0x7f181ae7cf50>",
                             "label": "FASTA_TO_ALPHAFOLD3_JSON.out.json"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e86e0>",
-                            "B": "<src.operation.Operation object at 0x7f32347e9700>",
+                            "A": "<src.process.Process object at 0x7f181ae7cf50>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7dc40>",
                             "label": "RUN_ALPHAFOLD3.out.cif"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347e9700>",
-                            "B": "<src.process.Process object at 0x7f32347e87a0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7dc40>",
+                            "B": "<src.process.Process object at 0x7f181ae5e150>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e86e0>",
-                            "B": "<src.process.Process object at 0x7f32347e8860>",
+                            "A": "<src.process.Process object at 0x7f181ae7cf50>",
+                            "B": "<src.process.Process object at 0x7f181ae5d880>",
                             "label": "RUN_ALPHAFOLD3.out.top_ranked_cif"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e86e0>",
-                            "B": "<src.operation.Operation object at 0x7f32347e8650>",
+                            "A": "<src.process.Process object at 0x7f181ae7cf50>",
+                            "B": "<src.operation.Operation object at 0x7f181ae5dbe0>",
                             "label": "RUN_ALPHAFOLD3.out.cif"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e87a0>",
-                            "B": "<src.operation.Operation object at 0x7f32347e8a70>",
+                            "A": "<src.process.Process object at 0x7f181ae5e150>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7cf80>",
                             "label": "MMCIF2PDB_MODELS.out.pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e8860>",
-                            "B": "<src.operation.Operation object at 0x7f32347e8b90>",
+                            "A": "<src.process.Process object at 0x7f181ae5d880>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7d0a0>",
                             "label": "MMCIF2PDB_TOP_RANKED.out.pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e86e0>",
-                            "B": "<src.operation.Operation object at 0x7f32347e8cb0>",
+                            "A": "<src.process.Process object at 0x7f181ae7cf50>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7d1c0>",
                             "label": "RUN_ALPHAFOLD3.out.msa"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e86e0>",
-                            "B": "<src.operation.Operation object at 0x7f32347e8e00>",
+                            "A": "<src.process.Process object at 0x7f181ae7cf50>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7d2e0>",
                             "label": "RUN_ALPHAFOLD3.out.multiqc"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32347e86e0>",
-                            "B": "<src.operation.Operation object at 0x7f32347e8f20>",
+                            "A": "<src.process.Process object at 0x7f181ae7cf50>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7d400>",
                             "label": "RUN_ALPHAFOLD3.out.pae"
                         }
                     ],
@@ -13206,7 +13206,7 @@
                 "PREPARE_COLABFOLD_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345677d0>",
+                            "id": "<src.operation.Operation object at 0x7f181af93920>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_colabfold_db = channel.value(file(colabfold_envdb_path, type: 'any', checkIfExists: true))",
@@ -13214,7 +13214,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458f7a0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac1b950>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniref30     = channel.value(file(colabfold_uniref30_path, type: 'any', checkIfExists: true))",
@@ -13222,7 +13222,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234567620>",
+                            "id": "<src.operation.Operation object at 0x7f181ad737a0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_params = channel.value(file(colabfold_alphafold2_params_path,  type: 'any', checkIfExists: true))",
@@ -13230,15 +13230,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345c88f0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac54c50>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_colabfold_db = MMSEQS_CREATEINDEX_COLABFOLDDB.out.db_indexed.map_modified { \u00a4139854438154416_2\u00a4 }",
+                            "xlabel": "ch_colabfold_db = MMSEQS_CREATEINDEX_COLABFOLDDB.out.db_indexed.map_modified { \u00a4139743003606864_2\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345c8950>",
+                            "id": "<src.operation.Operation object at 0x7f181ac54bc0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(MMSEQS_CREATEINDEX_COLABFOLDDB.out.versions)",
@@ -13246,7 +13246,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345c8b60>",
+                            "id": "<src.process.Process object at 0x7f181ac54e00>",
                             "name": "MMSEQS_CREATEINDEX_COLABFOLDDB",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -13254,31 +13254,31 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345c8bf0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac54e90>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_colabfold_db.map_modified { \u00a4139854438154416_1\u00a4 }",
+                            "xlabel": "ch_colabfold_db.map_modified { \u00a4139743003606864_1\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234670bc0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac3d0a0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_colabfold_db = ch_colabfold_db.map_modified { \u00a4139854438154416_3\u00a4 }",
+                            "xlabel": "ch_colabfold_db = ch_colabfold_db.map_modified { \u00a4139743003606864_3\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345c8f80>",
+                            "id": "<src.operation.Operation object at 0x7f181ac54fe0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_uniref30 = MMSEQS_CREATEINDEX_UNIPROT30.out.db_indexed.map_modified { \u00a4139854438154416_5\u00a4 }",
+                            "xlabel": "ch_uniref30 = MMSEQS_CREATEINDEX_UNIPROT30.out.db_indexed.map_modified { \u00a4139743003606864_5\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345c8ec0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac55160>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(MMSEQS_CREATEINDEX_UNIPROT30.out.versions)",
@@ -13286,7 +13286,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345c9070>",
+                            "id": "<src.process.Process object at 0x7f181ac552e0>",
                             "name": "MMSEQS_CREATEINDEX_UNIPROT30",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -13294,23 +13294,23 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345c9130>",
+                            "id": "<src.operation.Operation object at 0x7f181ac55370>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_uniref30.map_modified { \u00a4139854438154416_4\u00a4 }",
+                            "xlabel": "ch_uniref30.map_modified { \u00a4139743003606864_4\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345b1340>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7d580>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_uniref30 = ch_uniref30.map_modified { \u00a4139854438154416_6\u00a4 }",
+                            "xlabel": "ch_uniref30 = ch_uniref30.map_modified { \u00a4139743003606864_6\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345b17f0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac3d9a0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_COLABFOLD_DB.out.versions)",
@@ -13318,7 +13318,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345b1820>",
+                            "id": "<src.operation.Operation object at 0x7f181ac3d9d0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_colabfold_db = ARIA2_COLABFOLD_DB.out.db",
@@ -13326,7 +13326,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345b18b0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac3da60>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNIREF30.out.versions)",
@@ -13334,7 +13334,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345b1940>",
+                            "id": "<src.operation.Operation object at 0x7f181ac3daf0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniref30 = ARIA2_UNIREF30.out.db",
@@ -13342,15 +13342,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458f860>",
+                            "id": "<src.operation.Operation object at 0x7f181ac1bad0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_params = ARIA2_COLABFOLD_PARAMS.out.db.map_modified { \u00a4139854438154416_0\u00a4 }",
+                            "xlabel": "ch_params = ARIA2_COLABFOLD_PARAMS.out.db.map_modified { \u00a4139743003606864_0\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458f890>",
+                            "id": "<src.operation.Operation object at 0x7f181ac1b9b0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_COLABFOLD_PARAMS.out.versions)",
@@ -13358,7 +13358,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323473f1a0>",
+                            "id": "<src.operation.Operation object at 0x7f181addb380>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_params       = channel.empty()",
@@ -13366,7 +13366,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458f1d0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac1b3b0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_colabfold_db = channel.empty()",
@@ -13374,7 +13374,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458f260>",
+                            "id": "<src.operation.Operation object at 0x7f181ac1b470>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniref30     = channel.empty()",
@@ -13382,7 +13382,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458f2f0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac1b500>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions     = channel.empty()",
@@ -13392,283 +13392,283 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f32345c8b60>",
-                            "B": "<src.operation.Operation object at 0x7f32345c88f0>",
+                            "A": "<src.process.Process object at 0x7f181ac54e00>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54c50>",
                             "label": "MMSEQS_CREATEINDEX_COLABFOLDDB.out.db_indexed"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c8b60>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8950>",
+                            "A": "<src.process.Process object at 0x7f181ac54e00>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54bc0>",
                             "label": "MMSEQS_CREATEINDEX_COLABFOLDDB.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f2f0>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8950>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b500>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54bc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f890>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8950>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b9b0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54bc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b17f0>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8950>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3d9a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54bc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8950>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8950>",
+                            "A": "<src.operation.Operation object at 0x7f181ac54bc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54bc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b18b0>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8950>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3da60>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54bc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8ec0>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8950>",
+                            "A": "<src.operation.Operation object at 0x7f181ac55160>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54bc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f1d0>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8bf0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b3b0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54e90>",
                             "label": "ch_colabfold_db"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345677d0>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8bf0>",
+                            "A": "<src.operation.Operation object at 0x7f181af93920>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54e90>",
                             "label": "ch_colabfold_db"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b1820>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8bf0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3d9d0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54e90>",
                             "label": "ch_colabfold_db"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c88f0>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8bf0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac54c50>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54e90>",
                             "label": "ch_colabfold_db"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234670bc0>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8bf0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3d0a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54e90>",
                             "label": "ch_colabfold_db"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8bf0>",
-                            "B": "<src.process.Process object at 0x7f32345c8b60>",
+                            "A": "<src.operation.Operation object at 0x7f181ac54e90>",
+                            "B": "<src.process.Process object at 0x7f181ac54e00>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f1d0>",
-                            "B": "<src.operation.Operation object at 0x7f3234670bc0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b3b0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3d0a0>",
                             "label": "ch_colabfold_db"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345677d0>",
-                            "B": "<src.operation.Operation object at 0x7f3234670bc0>",
+                            "A": "<src.operation.Operation object at 0x7f181af93920>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3d0a0>",
                             "label": "ch_colabfold_db"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b1820>",
-                            "B": "<src.operation.Operation object at 0x7f3234670bc0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3d9d0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3d0a0>",
                             "label": "ch_colabfold_db"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c88f0>",
-                            "B": "<src.operation.Operation object at 0x7f3234670bc0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac54c50>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3d0a0>",
                             "label": "ch_colabfold_db"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234670bc0>",
-                            "B": "<src.operation.Operation object at 0x7f3234670bc0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3d0a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3d0a0>",
                             "label": "ch_colabfold_db"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c9070>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8f80>",
+                            "A": "<src.process.Process object at 0x7f181ac552e0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54fe0>",
                             "label": "MMSEQS_CREATEINDEX_UNIPROT30.out.db_indexed"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c9070>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8ec0>",
+                            "A": "<src.process.Process object at 0x7f181ac552e0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac55160>",
                             "label": "MMSEQS_CREATEINDEX_UNIPROT30.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f2f0>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8ec0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b500>",
+                            "B": "<src.operation.Operation object at 0x7f181ac55160>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f890>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8ec0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b9b0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac55160>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b17f0>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8ec0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3d9a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac55160>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8950>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8ec0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac54bc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac55160>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b18b0>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8ec0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3da60>",
+                            "B": "<src.operation.Operation object at 0x7f181ac55160>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8ec0>",
-                            "B": "<src.operation.Operation object at 0x7f32345c8ec0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac55160>",
+                            "B": "<src.operation.Operation object at 0x7f181ac55160>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f260>",
-                            "B": "<src.operation.Operation object at 0x7f32345c9130>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b470>",
+                            "B": "<src.operation.Operation object at 0x7f181ac55370>",
                             "label": "ch_uniref30"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f7a0>",
-                            "B": "<src.operation.Operation object at 0x7f32345c9130>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b950>",
+                            "B": "<src.operation.Operation object at 0x7f181ac55370>",
                             "label": "ch_uniref30"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b1940>",
-                            "B": "<src.operation.Operation object at 0x7f32345c9130>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3daf0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac55370>",
                             "label": "ch_uniref30"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8f80>",
-                            "B": "<src.operation.Operation object at 0x7f32345c9130>",
+                            "A": "<src.operation.Operation object at 0x7f181ac54fe0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac55370>",
                             "label": "ch_uniref30"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b1340>",
-                            "B": "<src.operation.Operation object at 0x7f32345c9130>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7d580>",
+                            "B": "<src.operation.Operation object at 0x7f181ac55370>",
                             "label": "ch_uniref30"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c9130>",
-                            "B": "<src.process.Process object at 0x7f32345c9070>",
+                            "A": "<src.operation.Operation object at 0x7f181ac55370>",
+                            "B": "<src.process.Process object at 0x7f181ac552e0>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f260>",
-                            "B": "<src.operation.Operation object at 0x7f32345b1340>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b470>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7d580>",
                             "label": "ch_uniref30"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f7a0>",
-                            "B": "<src.operation.Operation object at 0x7f32345b1340>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b950>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7d580>",
                             "label": "ch_uniref30"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b1940>",
-                            "B": "<src.operation.Operation object at 0x7f32345b1340>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3daf0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7d580>",
                             "label": "ch_uniref30"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8f80>",
-                            "B": "<src.operation.Operation object at 0x7f32345b1340>",
+                            "A": "<src.operation.Operation object at 0x7f181ac54fe0>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7d580>",
                             "label": "ch_uniref30"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b1340>",
-                            "B": "<src.operation.Operation object at 0x7f32345b1340>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7d580>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7d580>",
                             "label": "ch_uniref30"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f2f0>",
-                            "B": "<src.operation.Operation object at 0x7f32345b17f0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b500>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3d9a0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f890>",
-                            "B": "<src.operation.Operation object at 0x7f32345b17f0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b9b0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3d9a0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b17f0>",
-                            "B": "<src.operation.Operation object at 0x7f32345b17f0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3d9a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3d9a0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8950>",
-                            "B": "<src.operation.Operation object at 0x7f32345b17f0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac54bc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3d9a0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b18b0>",
-                            "B": "<src.operation.Operation object at 0x7f32345b17f0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3da60>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3d9a0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8ec0>",
-                            "B": "<src.operation.Operation object at 0x7f32345b17f0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac55160>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3d9a0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f2f0>",
-                            "B": "<src.operation.Operation object at 0x7f32345b18b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b500>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3da60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f890>",
-                            "B": "<src.operation.Operation object at 0x7f32345b18b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b9b0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3da60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b17f0>",
-                            "B": "<src.operation.Operation object at 0x7f32345b18b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3d9a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3da60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8950>",
-                            "B": "<src.operation.Operation object at 0x7f32345b18b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac54bc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3da60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b18b0>",
-                            "B": "<src.operation.Operation object at 0x7f32345b18b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3da60>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3da60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8ec0>",
-                            "B": "<src.operation.Operation object at 0x7f32345b18b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac55160>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3da60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f2f0>",
-                            "B": "<src.operation.Operation object at 0x7f323458f890>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b500>",
+                            "B": "<src.operation.Operation object at 0x7f181ac1b9b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458f890>",
-                            "B": "<src.operation.Operation object at 0x7f323458f890>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1b9b0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac1b9b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b17f0>",
-                            "B": "<src.operation.Operation object at 0x7f323458f890>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3d9a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac1b9b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8950>",
-                            "B": "<src.operation.Operation object at 0x7f323458f890>",
+                            "A": "<src.operation.Operation object at 0x7f181ac54bc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac1b9b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345b18b0>",
-                            "B": "<src.operation.Operation object at 0x7f323458f890>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3da60>",
+                            "B": "<src.operation.Operation object at 0x7f181ac1b9b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8ec0>",
-                            "B": "<src.operation.Operation object at 0x7f323458f890>",
+                            "A": "<src.operation.Operation object at 0x7f181ac55160>",
+                            "B": "<src.operation.Operation object at 0x7f181ac1b9b0>",
                             "label": "ch_versions"
                         }
                     ],
@@ -13676,23 +13676,23 @@
                         "ARIA2_UNCOMPRESS": {
                             "nodes": [
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32345803b0>",
+                                    "id": "<src.operation.Operation object at 0x7f181ad545f0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139853607693456_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743002537680_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32346e0650>",
+                                    "id": "<src.operation.Operation object at 0x7f181aec44a0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139853607693456_0\u00a4 }",
+                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139743002537680_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345b07d0>",
+                                    "id": "<src.process.Process object at 0x7f181ac3ca10>",
                                     "name": "UNTAR",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -13700,15 +13700,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234638950>",
+                                    "id": "<src.operation.Operation object at 0x7f181ae5c9b0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139853607693456_0\u00a4 }",
+                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139743002537680_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345b0aa0>",
+                                    "id": "<src.process.Process object at 0x7f181ac3cbc0>",
                                     "name": "GUNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -13716,15 +13716,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234550a10>",
+                                    "id": "<src.operation.Operation object at 0x7f181ac048c0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139853607693456_0\u00a4 }",
+                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139743002537680_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345b0d70>",
+                                    "id": "<src.process.Process object at 0x7f181ac3ce30>",
                                     "name": "ZSTD_DECOMPRESS",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -13732,15 +13732,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234550f80>",
+                                    "id": "<src.operation.Operation object at 0x7f181ad3ce60>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139853607693456_1\u00a4 }",
+                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139743002537680_1\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345b1040>",
+                                    "id": "<src.process.Process object at 0x7f181ac3d250>",
                                     "name": "UNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -13748,15 +13748,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32347012b0>",
+                                    "id": "<src.operation.Operation object at 0x7f181ad250a0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139853607693456_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743002537680_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32345b0230>",
+                                    "id": "<src.operation.Operation object at 0x7f181ac3c3e0>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "ch_db = channel.empty()",
@@ -13764,7 +13764,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345b0440>",
+                                    "id": "<src.process.Process object at 0x7f181ac3c4d0>",
                                     "name": "ARIA2",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -13772,7 +13772,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32345b04d0>",
+                                    "id": "<src.operation.Operation object at 0x7f181ac3c6b0>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "[\n            [:],\n            source_url\n        ]",
@@ -13782,58 +13782,58 @@
                             ],
                             "edges": [
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345b0440>",
-                                    "B": "<src.operation.Operation object at 0x7f32345803b0>",
+                                    "A": "<src.process.Process object at 0x7f181ac3c4d0>",
+                                    "B": "<src.operation.Operation object at 0x7f181ad545f0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345b0440>",
-                                    "B": "<src.process.Process object at 0x7f32345b07d0>",
+                                    "A": "<src.process.Process object at 0x7f181ac3c4d0>",
+                                    "B": "<src.process.Process object at 0x7f181ac3ca10>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345b07d0>",
-                                    "B": "<src.operation.Operation object at 0x7f32346e0650>",
+                                    "A": "<src.process.Process object at 0x7f181ac3ca10>",
+                                    "B": "<src.operation.Operation object at 0x7f181aec44a0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345b0440>",
-                                    "B": "<src.process.Process object at 0x7f32345b0aa0>",
+                                    "A": "<src.process.Process object at 0x7f181ac3c4d0>",
+                                    "B": "<src.process.Process object at 0x7f181ac3cbc0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345b0aa0>",
-                                    "B": "<src.operation.Operation object at 0x7f3234638950>",
+                                    "A": "<src.process.Process object at 0x7f181ac3cbc0>",
+                                    "B": "<src.operation.Operation object at 0x7f181ae5c9b0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345b0440>",
-                                    "B": "<src.process.Process object at 0x7f32345b0d70>",
+                                    "A": "<src.process.Process object at 0x7f181ac3c4d0>",
+                                    "B": "<src.process.Process object at 0x7f181ac3ce30>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345b0d70>",
-                                    "B": "<src.operation.Operation object at 0x7f3234550a10>",
+                                    "A": "<src.process.Process object at 0x7f181ac3ce30>",
+                                    "B": "<src.operation.Operation object at 0x7f181ac048c0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345b0440>",
-                                    "B": "<src.process.Process object at 0x7f32345b1040>",
+                                    "A": "<src.process.Process object at 0x7f181ac3c4d0>",
+                                    "B": "<src.process.Process object at 0x7f181ac3d250>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345b1040>",
-                                    "B": "<src.operation.Operation object at 0x7f3234550f80>",
+                                    "A": "<src.process.Process object at 0x7f181ac3d250>",
+                                    "B": "<src.operation.Operation object at 0x7f181ad3ce60>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345b0440>",
-                                    "B": "<src.operation.Operation object at 0x7f32347012b0>",
+                                    "A": "<src.process.Process object at 0x7f181ac3c4d0>",
+                                    "B": "<src.operation.Operation object at 0x7f181ad250a0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.operation.Operation object at 0x7f32345b04d0>",
-                                    "B": "<src.process.Process object at 0x7f32345b0440>",
+                                    "A": "<src.operation.Operation object at 0x7f181ac3c6b0>",
+                                    "B": "<src.process.Process object at 0x7f181ac3c4d0>",
                                     "label": ""
                                 }
                             ],
@@ -13844,7 +13844,7 @@
                 "COLABFOLD": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234816bd0>",
+                            "id": "<src.operation.Operation object at 0x7f181aea73e0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(MULTIFASTA_TO_CSV.out.versions)",
@@ -13852,7 +13852,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234817200>",
+                            "id": "<src.operation.Operation object at 0x7f181aea75f0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(COLABFOLD_BATCH.out.versions)",
@@ -13860,7 +13860,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234817380>",
+                            "id": "<src.process.Process object at 0x7f181aea77a0>",
                             "name": "MULTIFASTA_TO_CSV",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -13868,7 +13868,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348174a0>",
+                            "id": "<src.process.Process object at 0x7f181aea7890>",
                             "name": "COLABFOLD_BATCH",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -13876,7 +13876,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234817620>",
+                            "id": "<src.operation.Operation object at 0x7f181aea79b0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "MULTIFASTA_TO_CSV.out.input_csv.combine(ch_colabfold_params)",
@@ -13884,7 +13884,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234817740>",
+                            "id": "<src.operation.Operation object at 0x7f181aea7aa0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "[]",
@@ -13892,7 +13892,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348178f0>",
+                            "id": "<src.operation.Operation object at 0x7f181aea7c50>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "[]",
@@ -13900,7 +13900,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234817440>",
+                            "id": "<src.operation.Operation object at 0x7f181aea76e0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(MULTIFASTA_TO_CSV.out.versions)",
@@ -13908,7 +13908,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348173b0>",
+                            "id": "<src.operation.Operation object at 0x7f181aea79e0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(MMSEQS_COLABFOLDSEARCH.out.versions)",
@@ -13916,7 +13916,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234817b00>",
+                            "id": "<src.operation.Operation object at 0x7f181aea7e90>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions    = ch_versions.mix(COLABFOLD_BATCH.out.versions)",
@@ -13924,7 +13924,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234817bc0>",
+                            "id": "<src.process.Process object at 0x7f181aea7fb0>",
                             "name": "MULTIFASTA_TO_CSV",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -13932,7 +13932,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348cf6e0>",
+                            "id": "<src.process.Process object at 0x7f181aec4140>",
                             "name": "MMSEQS_COLABFOLDSEARCH",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -13940,7 +13940,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234817bf0>",
+                            "id": "<src.process.Process object at 0x7f181aec4110>",
                             "name": "COLABFOLD_BATCH",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -13948,7 +13948,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234815df0>",
+                            "id": "<src.operation.Operation object at 0x7f181aec44d0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "MMSEQS_COLABFOLDSEARCH.out.a3m.combine(ch_colabfold_params)",
@@ -13956,7 +13956,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323473ec00>",
+                            "id": "<src.operation.Operation object at 0x7f181ae3ef60>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_multiqc_report = channel.empty()",
@@ -13964,7 +13964,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234816cc0>",
+                            "id": "<src.operation.Operation object at 0x7f181aea7020>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "modeChannel(COLABFOLD_BATCH.out.msa, 'colabfold').set { ch_msa_final }",
@@ -13972,7 +13972,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234816d20>",
+                            "id": "<src.operation.Operation object at 0x7f181aea7080>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "modeChannel(COLABFOLD_BATCH.out.pae, 'colabfold').set { ch_pae_final }",
@@ -13980,244 +13980,244 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234816e70>",
+                            "id": "<src.operation.Operation object at 0x7f181aea71d0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "COLABFOLD_BATCH.out.top_ranked_pdb.map_modified { \u00a4139854438155856_0\u00a4 }.set { ch_top_ranked_pdb }",
+                            "xlabel": "COLABFOLD_BATCH.out.top_ranked_pdb.map_modified { \u00a4139743003689616_0\u00a4 }.set { ch_top_ranked_pdb }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234816f90>",
+                            "id": "<src.operation.Operation object at 0x7f181aea72f0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "COLABFOLD_BATCH.out.pdb.map_modified { \u00a4139854438155856_1\u00a4 }.set { ch_pdb_final }",
+                            "xlabel": "COLABFOLD_BATCH.out.pdb.map_modified { \u00a4139743003689616_1\u00a4 }.set { ch_pdb_final }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348170b0>",
+                            "id": "<src.operation.Operation object at 0x7f181aea7410>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "COLABFOLD_BATCH.out.multiqc.map_modified { \u00a4139854438155856_2\u00a4 }.toSortedList().map_modified { \u00a4139854438155856_3\u00a4 }.set { ch_multiqc_report  }",
+                            "xlabel": "COLABFOLD_BATCH.out.multiqc.map_modified { \u00a4139743003689616_2\u00a4 }.toSortedList().map_modified { \u00a4139743003689616_3\u00a4 }.set { ch_multiqc_report  }",
                             "fillcolor": "white",
                             "artificial": false
                         }
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f3234817380>",
-                            "B": "<src.operation.Operation object at 0x7f3234816bd0>",
+                            "A": "<src.process.Process object at 0x7f181aea77a0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea73e0>",
                             "label": "MULTIFASTA_TO_CSV.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234816bd0>",
-                            "B": "<src.operation.Operation object at 0x7f3234816bd0>",
+                            "A": "<src.operation.Operation object at 0x7f181aea73e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea73e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817200>",
-                            "B": "<src.operation.Operation object at 0x7f3234816bd0>",
+                            "A": "<src.operation.Operation object at 0x7f181aea75f0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea73e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817440>",
-                            "B": "<src.operation.Operation object at 0x7f3234816bd0>",
+                            "A": "<src.operation.Operation object at 0x7f181aea76e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea73e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348173b0>",
-                            "B": "<src.operation.Operation object at 0x7f3234816bd0>",
+                            "A": "<src.operation.Operation object at 0x7f181aea79e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea73e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817b00>",
-                            "B": "<src.operation.Operation object at 0x7f3234816bd0>",
+                            "A": "<src.operation.Operation object at 0x7f181aea7e90>",
+                            "B": "<src.operation.Operation object at 0x7f181aea73e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348174a0>",
-                            "B": "<src.operation.Operation object at 0x7f3234817200>",
+                            "A": "<src.process.Process object at 0x7f181aea7890>",
+                            "B": "<src.operation.Operation object at 0x7f181aea75f0>",
                             "label": "COLABFOLD_BATCH.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234816bd0>",
-                            "B": "<src.operation.Operation object at 0x7f3234817200>",
+                            "A": "<src.operation.Operation object at 0x7f181aea73e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea75f0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817200>",
-                            "B": "<src.operation.Operation object at 0x7f3234817200>",
+                            "A": "<src.operation.Operation object at 0x7f181aea75f0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea75f0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817440>",
-                            "B": "<src.operation.Operation object at 0x7f3234817200>",
+                            "A": "<src.operation.Operation object at 0x7f181aea76e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea75f0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348173b0>",
-                            "B": "<src.operation.Operation object at 0x7f3234817200>",
+                            "A": "<src.operation.Operation object at 0x7f181aea79e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea75f0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817b00>",
-                            "B": "<src.operation.Operation object at 0x7f3234817200>",
+                            "A": "<src.operation.Operation object at 0x7f181aea7e90>",
+                            "B": "<src.operation.Operation object at 0x7f181aea75f0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234817380>",
-                            "B": "<src.operation.Operation object at 0x7f3234817620>",
+                            "A": "<src.process.Process object at 0x7f181aea77a0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea79b0>",
                             "label": "MULTIFASTA_TO_CSV.out.input_csv"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817620>",
-                            "B": "<src.process.Process object at 0x7f32348174a0>",
+                            "A": "<src.operation.Operation object at 0x7f181aea79b0>",
+                            "B": "<src.process.Process object at 0x7f181aea7890>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817740>",
-                            "B": "<src.process.Process object at 0x7f32348174a0>",
+                            "A": "<src.operation.Operation object at 0x7f181aea7aa0>",
+                            "B": "<src.process.Process object at 0x7f181aea7890>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348178f0>",
-                            "B": "<src.process.Process object at 0x7f32348174a0>",
+                            "A": "<src.operation.Operation object at 0x7f181aea7c50>",
+                            "B": "<src.process.Process object at 0x7f181aea7890>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234817bc0>",
-                            "B": "<src.operation.Operation object at 0x7f3234817440>",
+                            "A": "<src.process.Process object at 0x7f181aea7fb0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea76e0>",
                             "label": "MULTIFASTA_TO_CSV.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234816bd0>",
-                            "B": "<src.operation.Operation object at 0x7f3234817440>",
+                            "A": "<src.operation.Operation object at 0x7f181aea73e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea76e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817200>",
-                            "B": "<src.operation.Operation object at 0x7f3234817440>",
+                            "A": "<src.operation.Operation object at 0x7f181aea75f0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea76e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817440>",
-                            "B": "<src.operation.Operation object at 0x7f3234817440>",
+                            "A": "<src.operation.Operation object at 0x7f181aea76e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea76e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348173b0>",
-                            "B": "<src.operation.Operation object at 0x7f3234817440>",
+                            "A": "<src.operation.Operation object at 0x7f181aea79e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea76e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817b00>",
-                            "B": "<src.operation.Operation object at 0x7f3234817440>",
+                            "A": "<src.operation.Operation object at 0x7f181aea7e90>",
+                            "B": "<src.operation.Operation object at 0x7f181aea76e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348cf6e0>",
-                            "B": "<src.operation.Operation object at 0x7f32348173b0>",
+                            "A": "<src.process.Process object at 0x7f181aec4140>",
+                            "B": "<src.operation.Operation object at 0x7f181aea79e0>",
                             "label": "MMSEQS_COLABFOLDSEARCH.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234816bd0>",
-                            "B": "<src.operation.Operation object at 0x7f32348173b0>",
+                            "A": "<src.operation.Operation object at 0x7f181aea73e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea79e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817200>",
-                            "B": "<src.operation.Operation object at 0x7f32348173b0>",
+                            "A": "<src.operation.Operation object at 0x7f181aea75f0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea79e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817440>",
-                            "B": "<src.operation.Operation object at 0x7f32348173b0>",
+                            "A": "<src.operation.Operation object at 0x7f181aea76e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea79e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348173b0>",
-                            "B": "<src.operation.Operation object at 0x7f32348173b0>",
+                            "A": "<src.operation.Operation object at 0x7f181aea79e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea79e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817b00>",
-                            "B": "<src.operation.Operation object at 0x7f32348173b0>",
+                            "A": "<src.operation.Operation object at 0x7f181aea7e90>",
+                            "B": "<src.operation.Operation object at 0x7f181aea79e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234817bf0>",
-                            "B": "<src.operation.Operation object at 0x7f3234817b00>",
+                            "A": "<src.process.Process object at 0x7f181aec4110>",
+                            "B": "<src.operation.Operation object at 0x7f181aea7e90>",
                             "label": "COLABFOLD_BATCH.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234816bd0>",
-                            "B": "<src.operation.Operation object at 0x7f3234817b00>",
+                            "A": "<src.operation.Operation object at 0x7f181aea73e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea7e90>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817200>",
-                            "B": "<src.operation.Operation object at 0x7f3234817b00>",
+                            "A": "<src.operation.Operation object at 0x7f181aea75f0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea7e90>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817440>",
-                            "B": "<src.operation.Operation object at 0x7f3234817b00>",
+                            "A": "<src.operation.Operation object at 0x7f181aea76e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea7e90>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348173b0>",
-                            "B": "<src.operation.Operation object at 0x7f3234817b00>",
+                            "A": "<src.operation.Operation object at 0x7f181aea79e0>",
+                            "B": "<src.operation.Operation object at 0x7f181aea7e90>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817b00>",
-                            "B": "<src.operation.Operation object at 0x7f3234817b00>",
+                            "A": "<src.operation.Operation object at 0x7f181aea7e90>",
+                            "B": "<src.operation.Operation object at 0x7f181aea7e90>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234817bc0>",
-                            "B": "<src.process.Process object at 0x7f32348cf6e0>",
+                            "A": "<src.process.Process object at 0x7f181aea7fb0>",
+                            "B": "<src.process.Process object at 0x7f181aec4140>",
                             "label": "MULTIFASTA_TO_CSV.out.input_csv"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348cf6e0>",
-                            "B": "<src.operation.Operation object at 0x7f3234815df0>",
+                            "A": "<src.process.Process object at 0x7f181aec4140>",
+                            "B": "<src.operation.Operation object at 0x7f181aec44d0>",
                             "label": "MMSEQS_COLABFOLDSEARCH.out.a3m"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234815df0>",
-                            "B": "<src.process.Process object at 0x7f3234817bf0>",
+                            "A": "<src.operation.Operation object at 0x7f181aec44d0>",
+                            "B": "<src.process.Process object at 0x7f181aec4110>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348174a0>",
-                            "B": "<src.operation.Operation object at 0x7f3234816e70>",
+                            "A": "<src.process.Process object at 0x7f181aea7890>",
+                            "B": "<src.operation.Operation object at 0x7f181aea71d0>",
                             "label": "COLABFOLD_BATCH.out.top_ranked_pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234817bf0>",
-                            "B": "<src.operation.Operation object at 0x7f3234816e70>",
+                            "A": "<src.process.Process object at 0x7f181aec4110>",
+                            "B": "<src.operation.Operation object at 0x7f181aea71d0>",
                             "label": "COLABFOLD_BATCH.out.top_ranked_pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348174a0>",
-                            "B": "<src.operation.Operation object at 0x7f3234816f90>",
+                            "A": "<src.process.Process object at 0x7f181aea7890>",
+                            "B": "<src.operation.Operation object at 0x7f181aea72f0>",
                             "label": "COLABFOLD_BATCH.out.pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234817bf0>",
-                            "B": "<src.operation.Operation object at 0x7f3234816f90>",
+                            "A": "<src.process.Process object at 0x7f181aec4110>",
+                            "B": "<src.operation.Operation object at 0x7f181aea72f0>",
                             "label": "COLABFOLD_BATCH.out.pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348174a0>",
-                            "B": "<src.operation.Operation object at 0x7f32348170b0>",
+                            "A": "<src.process.Process object at 0x7f181aea7890>",
+                            "B": "<src.operation.Operation object at 0x7f181aea7410>",
                             "label": "COLABFOLD_BATCH.out.multiqc"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234817bf0>",
-                            "B": "<src.operation.Operation object at 0x7f32348170b0>",
+                            "A": "<src.process.Process object at 0x7f181aec4110>",
+                            "B": "<src.operation.Operation object at 0x7f181aea7410>",
                             "label": "COLABFOLD_BATCH.out.multiqc"
                         }
                     ],
@@ -14226,7 +14226,7 @@
                 "PREPARE_ESMFOLD_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347ca9c0>",
+                            "id": "<src.operation.Operation object at 0x7f181affec90>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_params     = channel.value(file(esmfold_params_path, checkIfExists: true ))",
@@ -14234,15 +14234,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323463a930>",
+                            "id": "<src.operation.Operation object at 0x7f181aec6ea0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_params = ARIA2_ESMFOLD_3B_V1.out.downloaded_file.map_modified { \u00a4139854438102656_0\u00a4 }.mix(\n                            ARIA2_ESM2_T36_3B_UR50D.out.downloaded_file.map_modified { \u00a4139854438102656_0\u00a4 },\n                            ARIA2_ESM2_T36_3B_UR50D_CONTACT_REGRESSION.out.downloaded_file.map_modified { \u00a4139854438102656_0\u00a4 }).collect()",
+                            "xlabel": "ch_params = ARIA2_ESMFOLD_3B_V1.out.downloaded_file.map_modified { \u00a4139743003603936_0\u00a4 }.mix(\n                            ARIA2_ESM2_T36_3B_UR50D.out.downloaded_file.map_modified { \u00a4139743003603936_0\u00a4 },\n                            ARIA2_ESM2_T36_3B_UR50D_CONTACT_REGRESSION.out.downloaded_file.map_modified { \u00a4139743003603936_0\u00a4 }).collect()",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323463ab10>",
+                            "id": "<src.operation.Operation object at 0x7f181aec6ed0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_ESMFOLD_3B_V1.out.versions)",
@@ -14250,7 +14250,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f323463ac90>",
+                            "id": "<src.process.Process object at 0x7f181aec7020>",
                             "name": "ARIA2_ESMFOLD_3B_V1",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -14258,7 +14258,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323463acc0>",
+                            "id": "<src.operation.Operation object at 0x7f181aec70b0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "[\n                [:],\n                esmfold_3B_v1\n            ]",
@@ -14266,7 +14266,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f323463adb0>",
+                            "id": "<src.process.Process object at 0x7f181aec7050>",
                             "name": "ARIA2_ESM2_T36_3B_UR50D",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -14274,7 +14274,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323463b080>",
+                            "id": "<src.operation.Operation object at 0x7f181aec7380>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "[\n                [:],\n                esm2_t36_3B_UR50D\n            ]",
@@ -14282,7 +14282,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f323463aea0>",
+                            "id": "<src.process.Process object at 0x7f181aec71a0>",
                             "name": "ARIA2_ESM2_T36_3B_UR50D_CONTACT_REGRESSION",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -14290,7 +14290,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323463b1a0>",
+                            "id": "<src.operation.Operation object at 0x7f181aec74a0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "[\n                [:],\n                esm2_t36_3B_UR50D_contact_regression\n            ]",
@@ -14298,7 +14298,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323476a870>",
+                            "id": "<src.operation.Operation object at 0x7f181ae86ba0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions   = channel.empty()",
@@ -14308,48 +14308,48 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f323463ac90>",
-                            "B": "<src.operation.Operation object at 0x7f323463a930>",
+                            "A": "<src.process.Process object at 0x7f181aec7020>",
+                            "B": "<src.operation.Operation object at 0x7f181aec6ea0>",
                             "label": "ARIA2_ESMFOLD_3B_V1.out.downloaded_file"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f323463adb0>",
-                            "B": "<src.operation.Operation object at 0x7f323463a930>",
+                            "A": "<src.process.Process object at 0x7f181aec7050>",
+                            "B": "<src.operation.Operation object at 0x7f181aec6ea0>",
                             "label": "ARIA2_ESM2_T36_3B_UR50D.out.downloaded_file"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f323463aea0>",
-                            "B": "<src.operation.Operation object at 0x7f323463a930>",
+                            "A": "<src.process.Process object at 0x7f181aec71a0>",
+                            "B": "<src.operation.Operation object at 0x7f181aec6ea0>",
                             "label": "ARIA2_ESM2_T36_3B_UR50D_CONTACT_REGRESSION.out.downloaded_file"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f323463ac90>",
-                            "B": "<src.operation.Operation object at 0x7f323463ab10>",
+                            "A": "<src.process.Process object at 0x7f181aec7020>",
+                            "B": "<src.operation.Operation object at 0x7f181aec6ed0>",
                             "label": "ARIA2_ESMFOLD_3B_V1.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323476a870>",
-                            "B": "<src.operation.Operation object at 0x7f323463ab10>",
+                            "A": "<src.operation.Operation object at 0x7f181ae86ba0>",
+                            "B": "<src.operation.Operation object at 0x7f181aec6ed0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323463ab10>",
-                            "B": "<src.operation.Operation object at 0x7f323463ab10>",
+                            "A": "<src.operation.Operation object at 0x7f181aec6ed0>",
+                            "B": "<src.operation.Operation object at 0x7f181aec6ed0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323463acc0>",
-                            "B": "<src.process.Process object at 0x7f323463ac90>",
+                            "A": "<src.operation.Operation object at 0x7f181aec70b0>",
+                            "B": "<src.process.Process object at 0x7f181aec7020>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323463b080>",
-                            "B": "<src.process.Process object at 0x7f323463adb0>",
+                            "A": "<src.operation.Operation object at 0x7f181aec7380>",
+                            "B": "<src.process.Process object at 0x7f181aec7050>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323463b1a0>",
-                            "B": "<src.process.Process object at 0x7f323463aea0>",
+                            "A": "<src.operation.Operation object at 0x7f181aec74a0>",
+                            "B": "<src.process.Process object at 0x7f181aec71a0>",
                             "label": ""
                         }
                     ],
@@ -14358,7 +14358,7 @@
                 "ESMFOLD": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f323463baa0>",
+                            "id": "<src.operation.Operation object at 0x7f181ae7fd70>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(MULTIFASTA_TO_SINGLEFASTA.out.versions)",
@@ -14366,7 +14366,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323463bad0>",
+                            "id": "<src.operation.Operation object at 0x7f181aec7d40>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(RUN_ESMFOLD.out.versions)",
@@ -14374,7 +14374,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f323463bcb0>",
+                            "id": "<src.process.Process object at 0x7f181aec7f80>",
                             "name": "MULTIFASTA_TO_SINGLEFASTA",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -14382,15 +14382,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234817fe0>",
+                            "id": "<src.operation.Operation object at 0x7f181aed83b0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_input_by_entity_count.multimer.map_modified { \u00a4139854438155424_1\u00a4 }",
+                            "xlabel": "ch_input_by_entity_count.multimer.map_modified { \u00a4139743003689952_1\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348f99d0>",
+                            "id": "<src.process.Process object at 0x7f181aec7fe0>",
                             "name": "RUN_ESMFOLD",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -14398,15 +14398,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348e02f0>",
+                            "id": "<src.operation.Operation object at 0x7f181aed8500>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_input_by_entity_count.monomer.map_modified { \u00a4139854438155424_2\u00a4 }.mix(MULTIFASTA_TO_SINGLEFASTA.out.input_fasta)",
+                            "xlabel": "ch_input_by_entity_count.monomer.map_modified { \u00a4139743003689952_2\u00a4 }.mix(MULTIFASTA_TO_SINGLEFASTA.out.input_fasta)",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347eb0e0>",
+                            "id": "<src.operation.Operation object at 0x7f181aec7f20>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "modeChannel(RUN_ESMFOLD.out.pdb, 'esmfold').set { ch_pdb_final }",
@@ -14414,81 +14414,81 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234721250>",
+                            "id": "<src.operation.Operation object at 0x7f181aed8110>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_samplesheet.map_modified { \u00a4139854438155424_0\u00a4 }.branch { it ->\n            multimer: it[2] > 1\n            monomer: it[2] <= 1\n        }.set { ch_input_by_entity_count }",
+                            "xlabel": "ch_samplesheet.map_modified { \u00a4139743003689952_0\u00a4 }.branch { it ->\n            multimer: it[2] > 1\n            monomer: it[2] <= 1\n        }.set { ch_input_by_entity_count }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234768e60>",
+                            "id": "<src.operation.Operation object at 0x7f181aed8230>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_ESMFOLD.out.multiqc.map_modified { \u00a4139854438155424_3\u00a4 }.toSortedList().map_modified { \u00a4139854438155424_4\u00a4 }.set { ch_multiqc_report  }",
+                            "xlabel": "RUN_ESMFOLD.out.multiqc.map_modified { \u00a4139743003689952_3\u00a4 }.toSortedList().map_modified { \u00a4139743003689952_4\u00a4 }.set { ch_multiqc_report  }",
                             "fillcolor": "white",
                             "artificial": false
                         }
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f323463bcb0>",
-                            "B": "<src.operation.Operation object at 0x7f323463baa0>",
+                            "A": "<src.process.Process object at 0x7f181aec7f80>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7fd70>",
                             "label": "MULTIFASTA_TO_SINGLEFASTA.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323463baa0>",
-                            "B": "<src.operation.Operation object at 0x7f323463baa0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7fd70>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7fd70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323463bad0>",
-                            "B": "<src.operation.Operation object at 0x7f323463baa0>",
+                            "A": "<src.operation.Operation object at 0x7f181aec7d40>",
+                            "B": "<src.operation.Operation object at 0x7f181ae7fd70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348f99d0>",
-                            "B": "<src.operation.Operation object at 0x7f323463bad0>",
+                            "A": "<src.process.Process object at 0x7f181aec7fe0>",
+                            "B": "<src.operation.Operation object at 0x7f181aec7d40>",
                             "label": "RUN_ESMFOLD.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323463baa0>",
-                            "B": "<src.operation.Operation object at 0x7f323463bad0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae7fd70>",
+                            "B": "<src.operation.Operation object at 0x7f181aec7d40>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323463bad0>",
-                            "B": "<src.operation.Operation object at 0x7f323463bad0>",
+                            "A": "<src.operation.Operation object at 0x7f181aec7d40>",
+                            "B": "<src.operation.Operation object at 0x7f181aec7d40>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234721250>",
-                            "B": "<src.operation.Operation object at 0x7f3234817fe0>",
+                            "A": "<src.operation.Operation object at 0x7f181aed8110>",
+                            "B": "<src.operation.Operation object at 0x7f181aed83b0>",
                             "label": "ch_input_by_entity_count"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817fe0>",
-                            "B": "<src.process.Process object at 0x7f323463bcb0>",
+                            "A": "<src.operation.Operation object at 0x7f181aed83b0>",
+                            "B": "<src.process.Process object at 0x7f181aec7f80>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f323463bcb0>",
-                            "B": "<src.operation.Operation object at 0x7f32348e02f0>",
+                            "A": "<src.process.Process object at 0x7f181aec7f80>",
+                            "B": "<src.operation.Operation object at 0x7f181aed8500>",
                             "label": "MULTIFASTA_TO_SINGLEFASTA.out.input_fasta"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234721250>",
-                            "B": "<src.operation.Operation object at 0x7f32348e02f0>",
+                            "A": "<src.operation.Operation object at 0x7f181aed8110>",
+                            "B": "<src.operation.Operation object at 0x7f181aed8500>",
                             "label": "ch_input_by_entity_count"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348e02f0>",
-                            "B": "<src.process.Process object at 0x7f32348f99d0>",
+                            "A": "<src.operation.Operation object at 0x7f181aed8500>",
+                            "B": "<src.process.Process object at 0x7f181aec7fe0>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348f99d0>",
-                            "B": "<src.operation.Operation object at 0x7f3234768e60>",
+                            "A": "<src.process.Process object at 0x7f181aec7fe0>",
+                            "B": "<src.operation.Operation object at 0x7f181aed8230>",
                             "label": "RUN_ESMFOLD.out.multiqc"
                         }
                     ],
@@ -14497,7 +14497,7 @@
                 "PREPARE_ROSETTAFOLD_ALL_ATOM_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f32661b5790>",
+                            "id": "<src.operation.Operation object at 0x7f18741c98e0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_bfd                  = channel.value(file(rosettafold_all_atom_bfd_path, checkIfExists: true))",
@@ -14505,7 +14505,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323464d7c0>",
+                            "id": "<src.operation.Operation object at 0x7f181aed9a90>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniref30             = channel.value(file(rosettafold_all_atom_uniref30_path, checkIfExists: true))",
@@ -14513,7 +14513,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323464d820>",
+                            "id": "<src.operation.Operation object at 0x7f181aed9a60>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pdb100               = channel.value(file(rosettafold_all_atom_pdb100_path, checkIfExists: true))",
@@ -14521,7 +14521,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323464d9a0>",
+                            "id": "<src.operation.Operation object at 0x7f181aed9be0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_rfaa_paper_weights   = channel.value(file(rosettafold_all_atom_paper_weights_path, checkIfExists: true))",
@@ -14529,15 +14529,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323473dc70>",
+                            "id": "<src.operation.Operation object at 0x7f181aed9d00>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_bfd = ARIA2_BFD.out.db.map_modified { \u00a4139854459944352_0\u00a4 }",
+                            "xlabel": "ch_bfd = ARIA2_BFD.out.db.map_modified { \u00a4139743003604896_0\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323464dc40>",
+                            "id": "<src.operation.Operation object at 0x7f181aed9e20>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_BFD.out.versions)",
@@ -14545,15 +14545,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323464dc10>",
+                            "id": "<src.operation.Operation object at 0x7f181aed9eb0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_uniref30 = ARIA2_UNIREF30.out.db.map_modified { \u00a4139854459944352_1\u00a4 }",
+                            "xlabel": "ch_uniref30 = ARIA2_UNIREF30.out.db.map_modified { \u00a4139743003604896_1\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323464dd60>",
+                            "id": "<src.operation.Operation object at 0x7f181aed9f10>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNIREF30.out.versions)",
@@ -14561,15 +14561,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323464ddf0>",
+                            "id": "<src.operation.Operation object at 0x7f181aed9fa0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_pdb100 = ARIA2_PDB100.out.db.map_modified { \u00a4139854459944352_1\u00a4 }",
+                            "xlabel": "ch_pdb100 = ARIA2_PDB100.out.db.map_modified { \u00a4139743003604896_1\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323464de80>",
+                            "id": "<src.operation.Operation object at 0x7f181aeda030>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_PDB100.out.versions)",
@@ -14577,7 +14577,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323464df10>",
+                            "id": "<src.operation.Operation object at 0x7f181aeda0c0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_rfaa_paper_weights = ARIA2_WEIGHTS.out.db",
@@ -14585,7 +14585,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323464e060>",
+                            "id": "<src.operation.Operation object at 0x7f181aeda210>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_WEIGHTS.out.versions)",
@@ -14593,7 +14593,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347f56a0>",
+                            "id": "<src.operation.Operation object at 0x7f1874069940>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions                 = channel.empty()",
@@ -14603,103 +14603,103 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347f56a0>",
-                            "B": "<src.operation.Operation object at 0x7f323464dc40>",
+                            "A": "<src.operation.Operation object at 0x7f1874069940>",
+                            "B": "<src.operation.Operation object at 0x7f181aed9e20>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464dc40>",
-                            "B": "<src.operation.Operation object at 0x7f323464dc40>",
+                            "A": "<src.operation.Operation object at 0x7f181aed9e20>",
+                            "B": "<src.operation.Operation object at 0x7f181aed9e20>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464dd60>",
-                            "B": "<src.operation.Operation object at 0x7f323464dc40>",
+                            "A": "<src.operation.Operation object at 0x7f181aed9f10>",
+                            "B": "<src.operation.Operation object at 0x7f181aed9e20>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464de80>",
-                            "B": "<src.operation.Operation object at 0x7f323464dc40>",
+                            "A": "<src.operation.Operation object at 0x7f181aeda030>",
+                            "B": "<src.operation.Operation object at 0x7f181aed9e20>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464e060>",
-                            "B": "<src.operation.Operation object at 0x7f323464dc40>",
+                            "A": "<src.operation.Operation object at 0x7f181aeda210>",
+                            "B": "<src.operation.Operation object at 0x7f181aed9e20>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347f56a0>",
-                            "B": "<src.operation.Operation object at 0x7f323464dd60>",
+                            "A": "<src.operation.Operation object at 0x7f1874069940>",
+                            "B": "<src.operation.Operation object at 0x7f181aed9f10>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464dc40>",
-                            "B": "<src.operation.Operation object at 0x7f323464dd60>",
+                            "A": "<src.operation.Operation object at 0x7f181aed9e20>",
+                            "B": "<src.operation.Operation object at 0x7f181aed9f10>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464dd60>",
-                            "B": "<src.operation.Operation object at 0x7f323464dd60>",
+                            "A": "<src.operation.Operation object at 0x7f181aed9f10>",
+                            "B": "<src.operation.Operation object at 0x7f181aed9f10>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464de80>",
-                            "B": "<src.operation.Operation object at 0x7f323464dd60>",
+                            "A": "<src.operation.Operation object at 0x7f181aeda030>",
+                            "B": "<src.operation.Operation object at 0x7f181aed9f10>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464e060>",
-                            "B": "<src.operation.Operation object at 0x7f323464dd60>",
+                            "A": "<src.operation.Operation object at 0x7f181aeda210>",
+                            "B": "<src.operation.Operation object at 0x7f181aed9f10>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347f56a0>",
-                            "B": "<src.operation.Operation object at 0x7f323464de80>",
+                            "A": "<src.operation.Operation object at 0x7f1874069940>",
+                            "B": "<src.operation.Operation object at 0x7f181aeda030>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464dc40>",
-                            "B": "<src.operation.Operation object at 0x7f323464de80>",
+                            "A": "<src.operation.Operation object at 0x7f181aed9e20>",
+                            "B": "<src.operation.Operation object at 0x7f181aeda030>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464dd60>",
-                            "B": "<src.operation.Operation object at 0x7f323464de80>",
+                            "A": "<src.operation.Operation object at 0x7f181aed9f10>",
+                            "B": "<src.operation.Operation object at 0x7f181aeda030>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464de80>",
-                            "B": "<src.operation.Operation object at 0x7f323464de80>",
+                            "A": "<src.operation.Operation object at 0x7f181aeda030>",
+                            "B": "<src.operation.Operation object at 0x7f181aeda030>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464e060>",
-                            "B": "<src.operation.Operation object at 0x7f323464de80>",
+                            "A": "<src.operation.Operation object at 0x7f181aeda210>",
+                            "B": "<src.operation.Operation object at 0x7f181aeda030>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32347f56a0>",
-                            "B": "<src.operation.Operation object at 0x7f323464e060>",
+                            "A": "<src.operation.Operation object at 0x7f1874069940>",
+                            "B": "<src.operation.Operation object at 0x7f181aeda210>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464dc40>",
-                            "B": "<src.operation.Operation object at 0x7f323464e060>",
+                            "A": "<src.operation.Operation object at 0x7f181aed9e20>",
+                            "B": "<src.operation.Operation object at 0x7f181aeda210>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464dd60>",
-                            "B": "<src.operation.Operation object at 0x7f323464e060>",
+                            "A": "<src.operation.Operation object at 0x7f181aed9f10>",
+                            "B": "<src.operation.Operation object at 0x7f181aeda210>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464de80>",
-                            "B": "<src.operation.Operation object at 0x7f323464e060>",
+                            "A": "<src.operation.Operation object at 0x7f181aeda030>",
+                            "B": "<src.operation.Operation object at 0x7f181aeda210>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323464e060>",
-                            "B": "<src.operation.Operation object at 0x7f323464e060>",
+                            "A": "<src.operation.Operation object at 0x7f181aeda210>",
+                            "B": "<src.operation.Operation object at 0x7f181aeda210>",
                             "label": "ch_versions"
                         }
                     ],
@@ -14707,23 +14707,23 @@
                         "ARIA2_UNCOMPRESS": {
                             "nodes": [
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f323464ede0>",
+                                    "id": "<src.operation.Operation object at 0x7f187416f050>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139853607194784_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743004084368_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32661a7020>",
+                                    "id": "<src.operation.Operation object at 0x7f181ae272f0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139853607194784_0\u00a4 }",
+                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139743004084368_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f323466f230>",
+                                    "id": "<src.process.Process object at 0x7f181aef7470>",
                                     "name": "UNTAR",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -14731,15 +14731,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f323464fe90>",
+                                    "id": "<src.operation.Operation object at 0x7f181ae7f380>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139853607194784_0\u00a4 }",
+                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139743004084368_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f323466ee10>",
+                                    "id": "<src.process.Process object at 0x7f181aef7650>",
                                     "name": "GUNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -14747,15 +14747,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32347f5df0>",
+                                    "id": "<src.operation.Operation object at 0x7f181afff3e0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139853607194784_0\u00a4 }",
+                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139743004084368_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f323466d4c0>",
+                                    "id": "<src.process.Process object at 0x7f181aef78f0>",
                                     "name": "ZSTD_DECOMPRESS",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -14763,15 +14763,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234787260>",
+                                    "id": "<src.operation.Operation object at 0x7f181af4f8c0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139853607194784_1\u00a4 }",
+                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139743004084368_1\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f323466f350>",
+                                    "id": "<src.process.Process object at 0x7f181aef6e70>",
                                     "name": "UNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -14779,15 +14779,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32348175c0>",
+                                    "id": "<src.operation.Operation object at 0x7f181aec74d0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139853607194784_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743004084368_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f323466ec60>",
+                                    "id": "<src.operation.Operation object at 0x7f181aef6ea0>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "ch_db = channel.empty()",
@@ -14795,7 +14795,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f323466ee70>",
+                                    "id": "<src.process.Process object at 0x7f181aef70e0>",
                                     "name": "ARIA2",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -14803,7 +14803,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f323466ef30>",
+                                    "id": "<src.operation.Operation object at 0x7f181aef7170>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "[\n            [:],\n            source_url\n        ]",
@@ -14813,58 +14813,58 @@
                             ],
                             "edges": [
                                 {
-                                    "A": "<src.process.Process object at 0x7f323466ee70>",
-                                    "B": "<src.operation.Operation object at 0x7f323464ede0>",
+                                    "A": "<src.process.Process object at 0x7f181aef70e0>",
+                                    "B": "<src.operation.Operation object at 0x7f187416f050>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323466ee70>",
-                                    "B": "<src.process.Process object at 0x7f323466f230>",
+                                    "A": "<src.process.Process object at 0x7f181aef70e0>",
+                                    "B": "<src.process.Process object at 0x7f181aef7470>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323466f230>",
-                                    "B": "<src.operation.Operation object at 0x7f32661a7020>",
+                                    "A": "<src.process.Process object at 0x7f181aef7470>",
+                                    "B": "<src.operation.Operation object at 0x7f181ae272f0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323466ee70>",
-                                    "B": "<src.process.Process object at 0x7f323466ee10>",
+                                    "A": "<src.process.Process object at 0x7f181aef70e0>",
+                                    "B": "<src.process.Process object at 0x7f181aef7650>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323466ee10>",
-                                    "B": "<src.operation.Operation object at 0x7f323464fe90>",
+                                    "A": "<src.process.Process object at 0x7f181aef7650>",
+                                    "B": "<src.operation.Operation object at 0x7f181ae7f380>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323466ee70>",
-                                    "B": "<src.process.Process object at 0x7f323466d4c0>",
+                                    "A": "<src.process.Process object at 0x7f181aef70e0>",
+                                    "B": "<src.process.Process object at 0x7f181aef78f0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323466d4c0>",
-                                    "B": "<src.operation.Operation object at 0x7f32347f5df0>",
+                                    "A": "<src.process.Process object at 0x7f181aef78f0>",
+                                    "B": "<src.operation.Operation object at 0x7f181afff3e0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323466ee70>",
-                                    "B": "<src.process.Process object at 0x7f323466f350>",
+                                    "A": "<src.process.Process object at 0x7f181aef70e0>",
+                                    "B": "<src.process.Process object at 0x7f181aef6e70>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323466f350>",
-                                    "B": "<src.operation.Operation object at 0x7f3234787260>",
+                                    "A": "<src.process.Process object at 0x7f181aef6e70>",
+                                    "B": "<src.operation.Operation object at 0x7f181af4f8c0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323466ee70>",
-                                    "B": "<src.operation.Operation object at 0x7f32348175c0>",
+                                    "A": "<src.process.Process object at 0x7f181aef70e0>",
+                                    "B": "<src.operation.Operation object at 0x7f181aec74d0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.operation.Operation object at 0x7f323466ef30>",
-                                    "B": "<src.process.Process object at 0x7f323466ee70>",
+                                    "A": "<src.operation.Operation object at 0x7f181aef7170>",
+                                    "B": "<src.process.Process object at 0x7f181aef70e0>",
                                     "label": ""
                                 }
                             ],
@@ -14875,7 +14875,7 @@
                 "ROSETTAFOLD_ALL_ATOM": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234638ad0>",
+                            "id": "<src.operation.Operation object at 0x7f181aef4da0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_multiqc_report = channel.empty()",
@@ -14883,7 +14883,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234670b00>",
+                            "id": "<src.operation.Operation object at 0x7f181ad0cd40>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(RUN_ROSETTAFOLD_ALL_ATOM.out.versions)",
@@ -14891,7 +14891,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234670d40>",
+                            "id": "<src.process.Process object at 0x7f181ad0cf80>",
                             "name": "FASTA2YAML",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -14899,7 +14899,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234671370>",
+                            "id": "<src.operation.Operation object at 0x7f181ad0d4f0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_input.fasta",
@@ -14907,7 +14907,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234670dd0>",
+                            "id": "<src.process.Process object at 0x7f181ad0cf20>",
                             "name": "RUN_ROSETTAFOLD_ALL_ATOM",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -14915,23 +14915,23 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32346715b0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad0d700>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_rosetta_all_atom_in.map_modified { \u00a4139854438156096_1\u00a4 }",
+                            "xlabel": "ch_rosetta_all_atom_in.map_modified { \u00a4139743640276720_1\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234671a30>",
+                            "id": "<src.operation.Operation object at 0x7f181ad0db80>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_rosetta_all_atom_in.map_modified { \u00a4139854438156096_2\u00a4 }",
+                            "xlabel": "ch_rosetta_all_atom_in.map_modified { \u00a4139743640276720_2\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234670da0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad0cf50>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "modeChannel(RUN_ROSETTAFOLD_ALL_ATOM.out.pdb, 'rosettafold_all_atom').set { ch_pdb_final }",
@@ -14939,7 +14939,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234670e00>",
+                            "id": "<src.operation.Operation object at 0x7f181ad0d070>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "modeChannel(RUN_ROSETTAFOLD_ALL_ATOM.out.msa, 'rosettafold_all_atom').set { ch_msa_final }",
@@ -14947,7 +14947,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234670f20>",
+                            "id": "<src.operation.Operation object at 0x7f181ad0d0d0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "modeChannel(RUN_ROSETTAFOLD_ALL_ATOM.out.pae, 'rosettafold_all_atom').set { ch_pae_final }",
@@ -14955,7 +14955,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234671010>",
+                            "id": "<src.operation.Operation object at 0x7f181ad0d190>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_samplesheet.branch { it ->\n        fasta: it[1].extension == 'fasta' $OR$ it[1].extension == 'fa'\n        yaml: it[1].extension == 'yaml'\n    }.set{ch_input}",
@@ -14963,81 +14963,81 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234671130>",
+                            "id": "<src.operation.Operation object at 0x7f181ad0d2b0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_input.yaml.map_modified { \u00a4139854438156096_0\u00a4 }.mix(FASTA2YAML.out.yaml.join(FASTA2YAML.out.fasta)).set{ch_rosetta_all_atom_in}",
+                            "xlabel": "ch_input.yaml.map_modified { \u00a4139743640276720_0\u00a4 }.mix(FASTA2YAML.out.yaml.join(FASTA2YAML.out.fasta)).set{ch_rosetta_all_atom_in}",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234671250>",
+                            "id": "<src.operation.Operation object at 0x7f181ad0d3d0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_ROSETTAFOLD_ALL_ATOM.out.multiqc.map_modified { \u00a4139854438156096_3\u00a4 }.toSortedList().map_modified { \u00a4139854438156096_4\u00a4 }.set { ch_multiqc_report }",
+                            "xlabel": "RUN_ROSETTAFOLD_ALL_ATOM.out.multiqc.map_modified { \u00a4139743640276720_3\u00a4 }.toSortedList().map_modified { \u00a4139743640276720_4\u00a4 }.set { ch_multiqc_report }",
                             "fillcolor": "white",
                             "artificial": false
                         }
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f3234670dd0>",
-                            "B": "<src.operation.Operation object at 0x7f3234670b00>",
+                            "A": "<src.process.Process object at 0x7f181ad0cf20>",
+                            "B": "<src.operation.Operation object at 0x7f181ad0cd40>",
                             "label": "RUN_ROSETTAFOLD_ALL_ATOM.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234670b00>",
-                            "B": "<src.operation.Operation object at 0x7f3234670b00>",
+                            "A": "<src.operation.Operation object at 0x7f181ad0cd40>",
+                            "B": "<src.operation.Operation object at 0x7f181ad0cd40>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234671010>",
-                            "B": "<src.operation.Operation object at 0x7f3234671370>",
+                            "A": "<src.operation.Operation object at 0x7f181ad0d190>",
+                            "B": "<src.operation.Operation object at 0x7f181ad0d4f0>",
                             "label": "ch_input"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234671370>",
-                            "B": "<src.process.Process object at 0x7f3234670d40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad0d4f0>",
+                            "B": "<src.process.Process object at 0x7f181ad0cf80>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234671130>",
-                            "B": "<src.operation.Operation object at 0x7f32346715b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad0d2b0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad0d700>",
                             "label": "ch_rosetta_all_atom_in"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32346715b0>",
-                            "B": "<src.process.Process object at 0x7f3234670dd0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad0d700>",
+                            "B": "<src.process.Process object at 0x7f181ad0cf20>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234671130>",
-                            "B": "<src.operation.Operation object at 0x7f3234671a30>",
+                            "A": "<src.operation.Operation object at 0x7f181ad0d2b0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad0db80>",
                             "label": "ch_rosetta_all_atom_in"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234671a30>",
-                            "B": "<src.process.Process object at 0x7f3234670dd0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad0db80>",
+                            "B": "<src.process.Process object at 0x7f181ad0cf20>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234670d40>",
-                            "B": "<src.operation.Operation object at 0x7f3234671130>",
+                            "A": "<src.process.Process object at 0x7f181ad0cf80>",
+                            "B": "<src.operation.Operation object at 0x7f181ad0d2b0>",
                             "label": "FASTA2YAML.out.yaml"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234670d40>",
-                            "B": "<src.operation.Operation object at 0x7f3234671130>",
+                            "A": "<src.process.Process object at 0x7f181ad0cf80>",
+                            "B": "<src.operation.Operation object at 0x7f181ad0d2b0>",
                             "label": "FASTA2YAML.out.fasta"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234671010>",
-                            "B": "<src.operation.Operation object at 0x7f3234671130>",
+                            "A": "<src.operation.Operation object at 0x7f181ad0d190>",
+                            "B": "<src.operation.Operation object at 0x7f181ad0d2b0>",
                             "label": "ch_input"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234670dd0>",
-                            "B": "<src.operation.Operation object at 0x7f3234671250>",
+                            "A": "<src.process.Process object at 0x7f181ad0cf20>",
+                            "B": "<src.operation.Operation object at 0x7f181ad0d3d0>",
                             "label": "RUN_ROSETTAFOLD_ALL_ATOM.out.multiqc"
                         }
                     ],
@@ -15046,7 +15046,7 @@
                 "PREPARE_HELIXFOLD3_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234768f50>",
+                            "id": "<src.operation.Operation object at 0x7f181ae24fb0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_uniclust30        = channel.value(file(helixfold3_uniclust30_path, checkIfExists: true))",
@@ -15054,7 +15054,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234698f80>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25280>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_ccd_preprocessed  = channel.value(file(helixfold3_ccd_preprocessed_path, checkIfExists: true))",
@@ -15062,7 +15062,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699040>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25250>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_rfam              = channel.value(file(helixfold3_rfam_path, checkIfExists: true))",
@@ -15070,7 +15070,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32346990d0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25310>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_bfd               = channel.value(file(helixfold3_bfd_path, checkIfExists: true))",
@@ -15078,7 +15078,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699160>",
+                            "id": "<src.operation.Operation object at 0x7f181ad253a0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_small_bfd         = channel.value(file(helixfold3_small_bfd_path, checkIfExists: true))",
@@ -15086,7 +15086,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32346991f0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25430>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_uniprot           = channel.value(file(helixfold3_uniprot_path, checkIfExists: true))",
@@ -15094,7 +15094,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699280>",
+                            "id": "<src.operation.Operation object at 0x7f181ad254c0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_pdb_seqres        = channel.value(file(helixfold3_pdb_seqres_path, checkIfExists: true))",
@@ -15102,7 +15102,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699310>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25550>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_uniref90          = channel.value(file(helixfold3_uniref90_path, checkIfExists: true))",
@@ -15110,7 +15110,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699460>",
+                            "id": "<src.operation.Operation object at 0x7f181ad255e0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_mgnify            = channel.value(file(helixfold3_mgnify_path, checkIfExists: true))",
@@ -15118,7 +15118,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32346993d0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25670>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_mmcif_files       = channel.value(file(helixfold3_pdb_mmcif_path, checkIfExists: true))",
@@ -15126,7 +15126,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699580>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25700>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_obsolete          = channel.value(file(helixfold3_obsolete_path, checkIfExists: true))",
@@ -15134,7 +15134,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699640>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25850>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_init_models       = channel.value(file(helixfold3_init_models_path, checkIfExists: true))",
@@ -15142,7 +15142,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234671b50>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25d90>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_uniclust30 = ARIA2_UNICLUST30.out.db",
@@ -15150,7 +15150,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNICLUST30.out.versions)",
@@ -15158,7 +15158,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699cd0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25dc0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_ccd_preprocessed = ARIA2_CCD_PREPROCESSED.out.db",
@@ -15166,7 +15166,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699b20>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25e80>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_CCD_PREPROCESSED.out.versions)",
@@ -15174,7 +15174,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699df0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25f10>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_rfam = ARIA2_RFAM.out.db",
@@ -15182,7 +15182,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699d60>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25fa0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_RFAM.out.versions)",
@@ -15190,7 +15190,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699f10>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26030>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_bfd = ARIA2_BFD.out.db",
@@ -15198,7 +15198,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699e80>",
+                            "id": "<src.operation.Operation object at 0x7f181ad260c0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_BFD.out.versions)",
@@ -15206,7 +15206,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a030>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26150>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_small_bfd = ARIA2_SMALL_BFD.out.db",
@@ -15214,7 +15214,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234699fa0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad261e0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_SMALL_BFD.out.versions)",
@@ -15222,7 +15222,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a150>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26270>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_uniref90 = ARIA2_UNIREF90.out.db",
@@ -15230,7 +15230,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a0c0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26300>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNIREF90.out.versions)",
@@ -15238,7 +15238,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a270>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26390>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_mgnify = ARIA2_MGNIFY.out.db",
@@ -15246,7 +15246,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a1e0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26420>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_MGNIFY.out.versions)",
@@ -15254,7 +15254,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a390>",
+                            "id": "<src.operation.Operation object at 0x7f181ad264b0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_mmcif_files = DOWNLOAD_PDBMMCIF.out.ch_db",
@@ -15262,7 +15262,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a300>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26540>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions               = ch_versions.mix(DOWNLOAD_PDBMMCIF.out.versions)",
@@ -15270,7 +15270,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347b24e0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad265d0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_obsolete = ARIA2_OBSOLETE.out.db",
@@ -15278,7 +15278,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a420>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26660>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions            = ch_versions.mix(ARIA2_OBSOLETE.out.versions)",
@@ -15286,7 +15286,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a600>",
+                            "id": "<src.operation.Operation object at 0x7f181ad266f0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_init_models = ARIA2_INIT_MODELS.out.db",
@@ -15294,7 +15294,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a570>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26780>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions               = ch_versions.mix(ARIA2_INIT_MODELS.out.versions)",
@@ -15302,15 +15302,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a720>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26810>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_helixfold3_pdb_seqres = ARIA2_PDB_SEQRES.out.downloaded_file.map_modified { \u00a4139854438104192_0\u00a4 }",
+                            "xlabel": "ch_helixfold3_pdb_seqres = ARIA2_PDB_SEQRES.out.downloaded_file.map_modified { \u00a4139743003604992_0\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a690>",
+                            "id": "<src.operation.Operation object at 0x7f181ad268a0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_PDB_SEQRES.out.versions)",
@@ -15318,7 +15318,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a840>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26930>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNIPROT_SPROT.out.versions)",
@@ -15326,7 +15326,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a7b0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad269c0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNIPROT_TREMBL.out.versions)",
@@ -15334,7 +15334,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a960>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26a50>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_uniprot = COMBINE_UNIPROT.out.ch_db",
@@ -15342,7 +15342,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469a8d0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26ae0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions =  ch_versions.mix(COMBINE_UNIPROT.out.versions)",
@@ -15350,7 +15350,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469aa80>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26b70>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_maxit_src = ARIA2_MAXIT.out.db",
@@ -15358,7 +15358,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "id": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_MAXIT.out.versions)",
@@ -15366,7 +15366,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32346e1010>",
+                            "id": "<src.process.Process object at 0x7f181ad712e0>",
                             "name": "DOWNLOAD_PDBMMCIF",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -15374,7 +15374,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32346e33e0>",
+                            "id": "<src.process.Process object at 0x7f181ad88050>",
                             "name": "ARIA2_PDB_SEQRES",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -15382,7 +15382,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345251c0>",
+                            "id": "<src.operation.Operation object at 0x7f181adb13a0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "[\n                [:],\n                helixfold3_pdb_seqres_link\n            ]",
@@ -15390,7 +15390,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234700a10>",
+                            "id": "<src.process.Process object at 0x7f181ad733e0>",
                             "name": "COMBINE_UNIPROT",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -15398,7 +15398,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347b0da0>",
+                            "id": "<src.operation.Operation object at 0x7f181aec4fe0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_helixfold3_maxit_src             = channel.value(file(helixfold3_maxit_src_path, checkIfExists: true))",
@@ -15406,7 +15406,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234698dd0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad25010>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions                         = channel.empty()",
@@ -15416,1238 +15416,1238 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234698dd0>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad25010>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699bb0>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad25df0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699b20>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad25e80>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699d60>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad25fa0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699e80>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad260c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699fa0>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad261e0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a0c0>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26300>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a1e0>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26420>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a300>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26540>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a420>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26660>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a570>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26780>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a690>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad268a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a840>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26930>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a7b0>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad269c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a8d0>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26ae0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469ab40>",
-                            "B": "<src.operation.Operation object at 0x7f3234699bb0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26cc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25df0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234698dd0>",
-                            "B": "<src.operation.Operation object at 0x7f3234699b20>",
+                            "A": "<src.operation.Operation object at 0x7f181ad25010>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25e80>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699bb0>",
-                            "B": "<src.operation.Operation object at 0x7f3234699b20>",
+                            "A": "<src.operation.Operation object at 0x7f181ad25df0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25e80>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699b20>",
-                            "B": "<src.operation.Operation object at 0x7f3234699b20>",
+                            "A": "<src.operation.Operation object at 0x7f181ad25e80>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25e80>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699d60>",
-                            "B": "<src.operation.Operation object at 0x7f3234699b20>",
+                            "A": "<src.operation.Operation object at 0x7f181ad25fa0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25e80>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699e80>",
-                            "B": "<src.operation.Operation object at 0x7f3234699b20>",
+                            "A": "<src.operation.Operation object at 0x7f181ad260c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25e80>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699fa0>",
-                            "B": "<src.operation.Operation object at 0x7f3234699b20>",
+                            "A": "<src.operation.Operation object at 0x7f181ad261e0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25e80>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a0c0>",
-                            "B": "<src.operation.Operation object at 0x7f3234699b20>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26300>",
+                            "B": "<src.operation.Operation object at 0x7f181ad25e80>",
                             "label": "ch_versions"
                         },
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+                            "A": "<src.operation.Operation object at 0x7f181ad261e0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26ae0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a0c0>",
-                            "B": "<src.operation.Operation object at 0x7f323469a8d0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26300>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26ae0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a1e0>",
-                            "B": "<src.operation.Operation object at 0x7f323469a8d0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26420>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26ae0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a300>",
-                            "B": "<src.operation.Operation object at 0x7f323469a8d0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26540>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26ae0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a420>",
-                            "B": "<src.operation.Operation object at 0x7f323469a8d0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26660>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26ae0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a570>",
-                            "B": "<src.operation.Operation object at 0x7f323469a8d0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26780>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26ae0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a690>",
-                            "B": "<src.operation.Operation object at 0x7f323469a8d0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad268a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26ae0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a840>",
-                            "B": "<src.operation.Operation object at 0x7f323469a8d0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26930>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26ae0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a7b0>",
-                            "B": "<src.operation.Operation object at 0x7f323469a8d0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad269c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26ae0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a8d0>",
-                            "B": "<src.operation.Operation object at 0x7f323469a8d0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26ae0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26ae0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469ab40>",
-                            "B": "<src.operation.Operation object at 0x7f323469a8d0>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26cc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26ae0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234698dd0>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad25010>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699bb0>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad25df0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699b20>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad25e80>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699d60>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad25fa0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699e80>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad260c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234699fa0>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad261e0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a0c0>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26300>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a1e0>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26420>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a300>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26540>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a420>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26660>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a570>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26780>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a690>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad268a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a840>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26930>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a7b0>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad269c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469a8d0>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26ae0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323469ab40>",
-                            "B": "<src.operation.Operation object at 0x7f323469ab40>",
+                            "A": "<src.operation.Operation object at 0x7f181ad26cc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ad26cc0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345251c0>",
-                            "B": "<src.process.Process object at 0x7f32346e33e0>",
+                            "A": "<src.operation.Operation object at 0x7f181adb13a0>",
+                            "B": "<src.process.Process object at 0x7f181ad88050>",
                             "label": ""
                         }
                     ],
@@ -16655,23 +16655,23 @@
                         "ARIA2_UNCOMPRESS": {
                             "nodes": [
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32346b3080>",
+                                    "id": "<src.operation.Operation object at 0x7f181afc8a40>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139853607295824_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743004218224_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234673500>",
+                                    "id": "<src.operation.Operation object at 0x7f181afcb8f0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139853607295824_0\u00a4 }",
+                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139743004218224_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234703680>",
+                                    "id": "<src.process.Process object at 0x7f181ad8ba70>",
                                     "name": "UNTAR",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -16679,15 +16679,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f323469b4d0>",
+                                    "id": "<src.operation.Operation object at 0x7f181aedba40>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139853607295824_0\u00a4 }",
+                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139743004218224_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234703920>",
+                                    "id": "<src.process.Process object at 0x7f181ad8bce0>",
                                     "name": "GUNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -16695,15 +16695,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f323469b9b0>",
+                                    "id": "<src.operation.Operation object at 0x7f181ae1bef0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139853607295824_0\u00a4 }",
+                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139743004218224_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234703bc0>",
+                                    "id": "<src.process.Process object at 0x7f181ad8bf80>",
                                     "name": "ZSTD_DECOMPRESS",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -16711,15 +16711,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32347ebc80>",
+                                    "id": "<src.operation.Operation object at 0x7f1899fb81a0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139853607295824_1\u00a4 }",
+                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139743004218224_1\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234703ec0>",
+                                    "id": "<src.process.Process object at 0x7f181adb02f0>",
                                     "name": "UNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -16727,15 +16727,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f323469be30>",
+                                    "id": "<src.operation.Operation object at 0x7f181ad70170>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139853607295824_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743004218224_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32347030b0>",
+                                    "id": "<src.operation.Operation object at 0x7f181ad89370>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "ch_db = channel.empty()",
@@ -16743,7 +16743,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32347032c0>",
+                                    "id": "<src.process.Process object at 0x7f181ad8b680>",
                                     "name": "ARIA2",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -16751,7 +16751,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234703380>",
+                                    "id": "<src.operation.Operation object at 0x7f181ad8b770>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "[\n            [:],\n            source_url\n        ]",
@@ -16761,58 +16761,58 @@
                             ],
                             "edges": [
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347032c0>",
-                                    "B": "<src.operation.Operation object at 0x7f32346b3080>",
+                                    "A": "<src.process.Process object at 0x7f181ad8b680>",
+                                    "B": "<src.operation.Operation object at 0x7f181afc8a40>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347032c0>",
-                                    "B": "<src.process.Process object at 0x7f3234703680>",
+                                    "A": "<src.process.Process object at 0x7f181ad8b680>",
+                                    "B": "<src.process.Process object at 0x7f181ad8ba70>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f3234703680>",
-                                    "B": "<src.operation.Operation object at 0x7f3234673500>",
+                                    "A": "<src.process.Process object at 0x7f181ad8ba70>",
+                                    "B": "<src.operation.Operation object at 0x7f181afcb8f0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347032c0>",
-                                    "B": "<src.process.Process object at 0x7f3234703920>",
+                                    "A": "<src.process.Process object at 0x7f181ad8b680>",
+                                    "B": "<src.process.Process object at 0x7f181ad8bce0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f3234703920>",
-                                    "B": "<src.operation.Operation object at 0x7f323469b4d0>",
+                                    "A": "<src.process.Process object at 0x7f181ad8bce0>",
+                                    "B": "<src.operation.Operation object at 0x7f181aedba40>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347032c0>",
-                                    "B": "<src.process.Process object at 0x7f3234703bc0>",
+                                    "A": "<src.process.Process object at 0x7f181ad8b680>",
+                                    "B": "<src.process.Process object at 0x7f181ad8bf80>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f3234703bc0>",
-                                    "B": "<src.operation.Operation object at 0x7f323469b9b0>",
+                                    "A": "<src.process.Process object at 0x7f181ad8bf80>",
+                                    "B": "<src.operation.Operation object at 0x7f181ae1bef0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347032c0>",
-                                    "B": "<src.process.Process object at 0x7f3234703ec0>",
+                                    "A": "<src.process.Process object at 0x7f181ad8b680>",
+                                    "B": "<src.process.Process object at 0x7f181adb02f0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f3234703ec0>",
-                                    "B": "<src.operation.Operation object at 0x7f32347ebc80>",
+                                    "A": "<src.process.Process object at 0x7f181adb02f0>",
+                                    "B": "<src.operation.Operation object at 0x7f1899fb81a0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32347032c0>",
-                                    "B": "<src.operation.Operation object at 0x7f323469be30>",
+                                    "A": "<src.process.Process object at 0x7f181ad8b680>",
+                                    "B": "<src.operation.Operation object at 0x7f181ad70170>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.operation.Operation object at 0x7f3234703380>",
-                                    "B": "<src.process.Process object at 0x7f32347032c0>",
+                                    "A": "<src.operation.Operation object at 0x7f181ad8b770>",
+                                    "B": "<src.process.Process object at 0x7f181ad8b680>",
                                     "label": ""
                                 }
                             ],
@@ -16823,7 +16823,7 @@
                 "HELIXFOLD3": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234817140>",
+                            "id": "<src.operation.Operation object at 0x7f181ad734d0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pdb            = channel.empty()",
@@ -16831,7 +16831,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234526660>",
+                            "id": "<src.operation.Operation object at 0x7f181adb3500>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_top_ranked_pdb = channel.empty()",
@@ -16839,7 +16839,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345271a0>",
+                            "id": "<src.operation.Operation object at 0x7f181adb3590>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_multiqc_report = channel.empty()",
@@ -16847,7 +16847,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234527230>",
+                            "id": "<src.operation.Operation object at 0x7f181adb2810>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pdb      = ch_pdb.mix(RUN_HELIXFOLD3.out.pdb)",
@@ -16855,7 +16855,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345272c0>",
+                            "id": "<src.operation.Operation object at 0x7f181adb36e0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(RUN_HELIXFOLD3.out.versions)",
@@ -16863,7 +16863,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234527500>",
+                            "id": "<src.process.Process object at 0x7f181adb1a30>",
                             "name": "FASTA2JSON",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -16871,7 +16871,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234527c50>",
+                            "id": "<src.operation.Operation object at 0x7f181adc0080>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_input.fasta",
@@ -16879,7 +16879,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345275c0>",
+                            "id": "<src.process.Process object at 0x7f181adb3620>",
                             "name": "RUN_HELIXFOLD3",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -16887,7 +16887,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234527e00>",
+                            "id": "<src.operation.Operation object at 0x7f181afe8230>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_input.json.mix(FASTA2JSON.out.json)",
@@ -16895,7 +16895,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345275f0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad8b8c0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "modeChannel(RUN_HELIXFOLD3.out.msa, 'helixfold3').set { ch_msa_final }",
@@ -16903,7 +16903,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323473f4a0>",
+                            "id": "<src.operation.Operation object at 0x7f181adb3950>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "modeChannel(RUN_HELIXFOLD3.out.pae, 'helixfold3').set { ch_pae_final }",
@@ -16911,7 +16911,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234527770>",
+                            "id": "<src.operation.Operation object at 0x7f181adb3aa0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_samplesheet.branch { it ->\n        fasta: it[1].extension == 'fasta' $OR$ it[1].extension == 'fa'\n        json: it[1].extension == 'json'\n    }.set { ch_input }",
@@ -16919,94 +16919,94 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234527890>",
+                            "id": "<src.operation.Operation object at 0x7f181adb3bc0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_HELIXFOLD3.out.multiqc.map_modified { \u00a4139854438160752_0\u00a4 }.toSortedList().map_modified { \u00a4139854438160752_1\u00a4 }.set { ch_multiqc_report }",
+                            "xlabel": "RUN_HELIXFOLD3.out.multiqc.map_modified { \u00a4139743003691728_0\u00a4 }.toSortedList().map_modified { \u00a4139743003691728_1\u00a4 }.set { ch_multiqc_report }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345279b0>",
+                            "id": "<src.operation.Operation object at 0x7f181adb3ce0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_HELIXFOLD3.out.top_ranked_pdb.map_modified { \u00a4139854438160752_2\u00a4 }.set { ch_top_ranked_pdb }",
+                            "xlabel": "RUN_HELIXFOLD3.out.top_ranked_pdb.map_modified { \u00a4139743003691728_2\u00a4 }.set { ch_top_ranked_pdb }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234527ad0>",
+                            "id": "<src.operation.Operation object at 0x7f181adb3e00>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_HELIXFOLD3.out.pdb.map_modified { \u00a4139854438160752_3\u00a4 }.set { ch_pdb_final }",
+                            "xlabel": "RUN_HELIXFOLD3.out.pdb.map_modified { \u00a4139743003691728_3\u00a4 }.set { ch_pdb_final }",
                             "fillcolor": "white",
                             "artificial": false
                         }
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f32345275c0>",
-                            "B": "<src.operation.Operation object at 0x7f3234527230>",
+                            "A": "<src.process.Process object at 0x7f181adb3620>",
+                            "B": "<src.operation.Operation object at 0x7f181adb2810>",
                             "label": "RUN_HELIXFOLD3.out.pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234817140>",
-                            "B": "<src.operation.Operation object at 0x7f3234527230>",
+                            "A": "<src.operation.Operation object at 0x7f181ad734d0>",
+                            "B": "<src.operation.Operation object at 0x7f181adb2810>",
                             "label": "ch_pdb"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234527230>",
-                            "B": "<src.operation.Operation object at 0x7f3234527230>",
+                            "A": "<src.operation.Operation object at 0x7f181adb2810>",
+                            "B": "<src.operation.Operation object at 0x7f181adb2810>",
                             "label": "ch_pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345275c0>",
-                            "B": "<src.operation.Operation object at 0x7f32345272c0>",
+                            "A": "<src.process.Process object at 0x7f181adb3620>",
+                            "B": "<src.operation.Operation object at 0x7f181adb36e0>",
                             "label": "RUN_HELIXFOLD3.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345272c0>",
-                            "B": "<src.operation.Operation object at 0x7f32345272c0>",
+                            "A": "<src.operation.Operation object at 0x7f181adb36e0>",
+                            "B": "<src.operation.Operation object at 0x7f181adb36e0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234527770>",
-                            "B": "<src.operation.Operation object at 0x7f3234527c50>",
+                            "A": "<src.operation.Operation object at 0x7f181adb3aa0>",
+                            "B": "<src.operation.Operation object at 0x7f181adc0080>",
                             "label": "ch_input"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234527c50>",
-                            "B": "<src.process.Process object at 0x7f3234527500>",
+                            "A": "<src.operation.Operation object at 0x7f181adc0080>",
+                            "B": "<src.process.Process object at 0x7f181adb1a30>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234527500>",
-                            "B": "<src.operation.Operation object at 0x7f3234527e00>",
+                            "A": "<src.process.Process object at 0x7f181adb1a30>",
+                            "B": "<src.operation.Operation object at 0x7f181afe8230>",
                             "label": "FASTA2JSON.out.json"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234527770>",
-                            "B": "<src.operation.Operation object at 0x7f3234527e00>",
+                            "A": "<src.operation.Operation object at 0x7f181adb3aa0>",
+                            "B": "<src.operation.Operation object at 0x7f181afe8230>",
                             "label": "ch_input"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234527e00>",
-                            "B": "<src.process.Process object at 0x7f32345275c0>",
+                            "A": "<src.operation.Operation object at 0x7f181afe8230>",
+                            "B": "<src.process.Process object at 0x7f181adb3620>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345275c0>",
-                            "B": "<src.operation.Operation object at 0x7f3234527890>",
+                            "A": "<src.process.Process object at 0x7f181adb3620>",
+                            "B": "<src.operation.Operation object at 0x7f181adb3bc0>",
                             "label": "RUN_HELIXFOLD3.out.multiqc"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345275c0>",
-                            "B": "<src.operation.Operation object at 0x7f32345279b0>",
+                            "A": "<src.process.Process object at 0x7f181adb3620>",
+                            "B": "<src.operation.Operation object at 0x7f181adb3ce0>",
                             "label": "RUN_HELIXFOLD3.out.top_ranked_pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345275c0>",
-                            "B": "<src.operation.Operation object at 0x7f3234527ad0>",
+                            "A": "<src.process.Process object at 0x7f181adb3620>",
+                            "B": "<src.operation.Operation object at 0x7f181adb3e00>",
                             "label": "RUN_HELIXFOLD3.out.pdb"
                         }
                     ],
@@ -17015,7 +17015,7 @@
                 "PREPARE_ROSETTAFOLD2NA_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347b0a10>",
+                            "id": "<src.operation.Operation object at 0x7f181ad88a40>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_bfd      = channel.value(file(rosettafold2na_bfd_path, checkIfExists: true))",
@@ -17023,7 +17023,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234550aa0>",
+                            "id": "<src.operation.Operation object at 0x7f181add8ad0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_uniref30 = channel.value(file(rosettafold2na_uniref30_path, checkIfExists: true))",
@@ -17031,7 +17031,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234550b60>",
+                            "id": "<src.operation.Operation object at 0x7f181add8bc0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_pdb100   = channel.value(file(rosettafold2na_pdb100_path, checkIfExists: true))",
@@ -17039,7 +17039,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234550bf0>",
+                            "id": "<src.operation.Operation object at 0x7f181add8c50>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_weights  = channel.value(file(rosettafold2na_weights_path, checkIfExists: true))",
@@ -17047,7 +17047,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234550ce0>",
+                            "id": "<src.operation.Operation object at 0x7f181add8da0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_rna      = channel.value(file(rosettafold2na_rna_path, checkIfExists: true))",
@@ -17055,15 +17055,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234550d70>",
+                            "id": "<src.operation.Operation object at 0x7f181add8ec0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_bfd = ARIA2_BFD.out.db.map_modified { \u00a4139854438105056_0\u00a4 }",
+                            "xlabel": "ch_bfd = ARIA2_BFD.out.db.map_modified { \u00a4139743003605232_0\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234551070>",
+                            "id": "<src.operation.Operation object at 0x7f181add9100>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_BFD.out.versions)",
@@ -17071,15 +17071,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234551100>",
+                            "id": "<src.operation.Operation object at 0x7f181add9040>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_uniref30 = ARIA2_UNIREF30.out.db.map_modified { \u00a4139854438105056_1\u00a4 }",
+                            "xlabel": "ch_uniref30 = ARIA2_UNIREF30.out.db.map_modified { \u00a4139743003605232_1\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234551190>",
+                            "id": "<src.operation.Operation object at 0x7f181add9190>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNIREF30.out.versions)",
@@ -17087,15 +17087,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234551220>",
+                            "id": "<src.operation.Operation object at 0x7f181add9220>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_pdb100 = ARIA2_PDB100.out.db.map_modified { \u00a4139854438105056_1\u00a4 }",
+                            "xlabel": "ch_pdb100 = ARIA2_PDB100.out.db.map_modified { \u00a4139743003605232_1\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345512b0>",
+                            "id": "<src.operation.Operation object at 0x7f181add92b0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_PDB100.out.versions)",
@@ -17103,15 +17103,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234551340>",
+                            "id": "<src.operation.Operation object at 0x7f181add9340>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_rna = DOWNLOAD_RNA_DATABASES.out.ch_db.map_modified { \u00a4139854438105056_1\u00a4 }",
+                            "xlabel": "ch_rna = DOWNLOAD_RNA_DATABASES.out.ch_db.map_modified { \u00a4139743003605232_1\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345513d0>",
+                            "id": "<src.operation.Operation object at 0x7f181add93d0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(DOWNLOAD_RNA_DATABASES.out.versions)",
@@ -17119,15 +17119,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234551460>",
+                            "id": "<src.operation.Operation object at 0x7f181add9460>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_weights = ARIA2_WEIGHTS.out.db.map_modified { \u00a4139854438105056_1\u00a4 }",
+                            "xlabel": "ch_weights = ARIA2_WEIGHTS.out.db.map_modified { \u00a4139743003605232_1\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234551520>",
+                            "id": "<src.operation.Operation object at 0x7f181add95b0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_WEIGHTS.out.versions)",
@@ -17135,7 +17135,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345659a0>",
+                            "id": "<src.process.Process object at 0x7f181adeda90>",
                             "name": "DOWNLOAD_RNA_DATABASES",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -17143,7 +17143,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32346388f0>",
+                            "id": "<src.operation.Operation object at 0x7f181adb0a10>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = channel.empty()",
@@ -17153,163 +17153,163 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.operation.Operation object at 0x7f32346388f0>",
-                            "B": "<src.operation.Operation object at 0x7f3234551070>",
+                            "A": "<src.operation.Operation object at 0x7f181adb0a10>",
+                            "B": "<src.operation.Operation object at 0x7f181add9100>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551070>",
-                            "B": "<src.operation.Operation object at 0x7f3234551070>",
+                            "A": "<src.operation.Operation object at 0x7f181add9100>",
+                            "B": "<src.operation.Operation object at 0x7f181add9100>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551190>",
-                            "B": "<src.operation.Operation object at 0x7f3234551070>",
+                            "A": "<src.operation.Operation object at 0x7f181add9190>",
+                            "B": "<src.operation.Operation object at 0x7f181add9100>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345512b0>",
-                            "B": "<src.operation.Operation object at 0x7f3234551070>",
+                            "A": "<src.operation.Operation object at 0x7f181add92b0>",
+                            "B": "<src.operation.Operation object at 0x7f181add9100>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345513d0>",
-                            "B": "<src.operation.Operation object at 0x7f3234551070>",
+                            "A": "<src.operation.Operation object at 0x7f181add93d0>",
+                            "B": "<src.operation.Operation object at 0x7f181add9100>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551520>",
-                            "B": "<src.operation.Operation object at 0x7f3234551070>",
+                            "A": "<src.operation.Operation object at 0x7f181add95b0>",
+                            "B": "<src.operation.Operation object at 0x7f181add9100>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32346388f0>",
-                            "B": "<src.operation.Operation object at 0x7f3234551190>",
+                            "A": "<src.operation.Operation object at 0x7f181adb0a10>",
+                            "B": "<src.operation.Operation object at 0x7f181add9190>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551070>",
-                            "B": "<src.operation.Operation object at 0x7f3234551190>",
+                            "A": "<src.operation.Operation object at 0x7f181add9100>",
+                            "B": "<src.operation.Operation object at 0x7f181add9190>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551190>",
-                            "B": "<src.operation.Operation object at 0x7f3234551190>",
+                            "A": "<src.operation.Operation object at 0x7f181add9190>",
+                            "B": "<src.operation.Operation object at 0x7f181add9190>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345512b0>",
-                            "B": "<src.operation.Operation object at 0x7f3234551190>",
+                            "A": "<src.operation.Operation object at 0x7f181add92b0>",
+                            "B": "<src.operation.Operation object at 0x7f181add9190>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345513d0>",
-                            "B": "<src.operation.Operation object at 0x7f3234551190>",
+                            "A": "<src.operation.Operation object at 0x7f181add93d0>",
+                            "B": "<src.operation.Operation object at 0x7f181add9190>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551520>",
-                            "B": "<src.operation.Operation object at 0x7f3234551190>",
+                            "A": "<src.operation.Operation object at 0x7f181add95b0>",
+                            "B": "<src.operation.Operation object at 0x7f181add9190>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32346388f0>",
-                            "B": "<src.operation.Operation object at 0x7f32345512b0>",
+                            "A": "<src.operation.Operation object at 0x7f181adb0a10>",
+                            "B": "<src.operation.Operation object at 0x7f181add92b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551070>",
-                            "B": "<src.operation.Operation object at 0x7f32345512b0>",
+                            "A": "<src.operation.Operation object at 0x7f181add9100>",
+                            "B": "<src.operation.Operation object at 0x7f181add92b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551190>",
-                            "B": "<src.operation.Operation object at 0x7f32345512b0>",
+                            "A": "<src.operation.Operation object at 0x7f181add9190>",
+                            "B": "<src.operation.Operation object at 0x7f181add92b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345512b0>",
-                            "B": "<src.operation.Operation object at 0x7f32345512b0>",
+                            "A": "<src.operation.Operation object at 0x7f181add92b0>",
+                            "B": "<src.operation.Operation object at 0x7f181add92b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345513d0>",
-                            "B": "<src.operation.Operation object at 0x7f32345512b0>",
+                            "A": "<src.operation.Operation object at 0x7f181add93d0>",
+                            "B": "<src.operation.Operation object at 0x7f181add92b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551520>",
-                            "B": "<src.operation.Operation object at 0x7f32345512b0>",
+                            "A": "<src.operation.Operation object at 0x7f181add95b0>",
+                            "B": "<src.operation.Operation object at 0x7f181add92b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345659a0>",
-                            "B": "<src.operation.Operation object at 0x7f3234551340>",
+                            "A": "<src.process.Process object at 0x7f181adeda90>",
+                            "B": "<src.operation.Operation object at 0x7f181add9340>",
                             "label": "DOWNLOAD_RNA_DATABASES.out.ch_db"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345659a0>",
-                            "B": "<src.operation.Operation object at 0x7f32345513d0>",
+                            "A": "<src.process.Process object at 0x7f181adeda90>",
+                            "B": "<src.operation.Operation object at 0x7f181add93d0>",
                             "label": "DOWNLOAD_RNA_DATABASES.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32346388f0>",
-                            "B": "<src.operation.Operation object at 0x7f32345513d0>",
+                            "A": "<src.operation.Operation object at 0x7f181adb0a10>",
+                            "B": "<src.operation.Operation object at 0x7f181add93d0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551070>",
-                            "B": "<src.operation.Operation object at 0x7f32345513d0>",
+                            "A": "<src.operation.Operation object at 0x7f181add9100>",
+                            "B": "<src.operation.Operation object at 0x7f181add93d0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551190>",
-                            "B": "<src.operation.Operation object at 0x7f32345513d0>",
+                            "A": "<src.operation.Operation object at 0x7f181add9190>",
+                            "B": "<src.operation.Operation object at 0x7f181add93d0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345512b0>",
-                            "B": "<src.operation.Operation object at 0x7f32345513d0>",
+                            "A": "<src.operation.Operation object at 0x7f181add92b0>",
+                            "B": "<src.operation.Operation object at 0x7f181add93d0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345513d0>",
-                            "B": "<src.operation.Operation object at 0x7f32345513d0>",
+                            "A": "<src.operation.Operation object at 0x7f181add93d0>",
+                            "B": "<src.operation.Operation object at 0x7f181add93d0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551520>",
-                            "B": "<src.operation.Operation object at 0x7f32345513d0>",
+                            "A": "<src.operation.Operation object at 0x7f181add95b0>",
+                            "B": "<src.operation.Operation object at 0x7f181add93d0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32346388f0>",
-                            "B": "<src.operation.Operation object at 0x7f3234551520>",
+                            "A": "<src.operation.Operation object at 0x7f181adb0a10>",
+                            "B": "<src.operation.Operation object at 0x7f181add95b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551070>",
-                            "B": "<src.operation.Operation object at 0x7f3234551520>",
+                            "A": "<src.operation.Operation object at 0x7f181add9100>",
+                            "B": "<src.operation.Operation object at 0x7f181add95b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551190>",
-                            "B": "<src.operation.Operation object at 0x7f3234551520>",
+                            "A": "<src.operation.Operation object at 0x7f181add9190>",
+                            "B": "<src.operation.Operation object at 0x7f181add95b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345512b0>",
-                            "B": "<src.operation.Operation object at 0x7f3234551520>",
+                            "A": "<src.operation.Operation object at 0x7f181add92b0>",
+                            "B": "<src.operation.Operation object at 0x7f181add95b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345513d0>",
-                            "B": "<src.operation.Operation object at 0x7f3234551520>",
+                            "A": "<src.operation.Operation object at 0x7f181add93d0>",
+                            "B": "<src.operation.Operation object at 0x7f181add95b0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234551520>",
-                            "B": "<src.operation.Operation object at 0x7f3234551520>",
+                            "A": "<src.operation.Operation object at 0x7f181add95b0>",
+                            "B": "<src.operation.Operation object at 0x7f181add95b0>",
                             "label": "ch_versions"
                         }
                     ],
@@ -17317,23 +17317,23 @@
                         "ARIA2_UNCOMPRESS": {
                             "nodes": [
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32347cbad0>",
+                                    "id": "<src.operation.Operation object at 0x7f181ad56480>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139853607619664_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743002462400_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234703230>",
+                                    "id": "<src.operation.Operation object at 0x7f181ae5e720>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139853607619664_0\u00a4 }",
+                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139743002462400_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345255b0>",
+                                    "id": "<src.process.Process object at 0x7f181addb860>",
                                     "name": "UNTAR",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -17341,15 +17341,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234536000>",
+                                    "id": "<src.operation.Operation object at 0x7f181addbce0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139853607619664_0\u00a4 }",
+                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139743002462400_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345661e0>",
+                                    "id": "<src.process.Process object at 0x7f181adee810>",
                                     "name": "GUNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -17357,15 +17357,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234526420>",
+                                    "id": "<src.operation.Operation object at 0x7f181aea6630>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139853607619664_0\u00a4 }",
+                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139743002462400_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234564860>",
+                                    "id": "<src.process.Process object at 0x7f181adec9b0>",
                                     "name": "ZSTD_DECOMPRESS",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -17373,15 +17373,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f323466e570>",
+                                    "id": "<src.operation.Operation object at 0x7f181ad0e870>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139853607619664_1\u00a4 }",
+                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139743002462400_1\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f3234566750>",
+                                    "id": "<src.process.Process object at 0x7f181adeeae0>",
                                     "name": "UNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -17389,15 +17389,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32347f6690>",
+                                    "id": "<src.operation.Operation object at 0x7f181ad3e990>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139853607619664_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743002462400_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32345660c0>",
+                                    "id": "<src.operation.Operation object at 0x7f181adee2d0>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "ch_db = channel.empty()",
@@ -17405,7 +17405,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f32345662a0>",
+                                    "id": "<src.process.Process object at 0x7f181adee4e0>",
                                     "name": "ARIA2",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -17413,7 +17413,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234566390>",
+                                    "id": "<src.operation.Operation object at 0x7f181adee5a0>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "[\n            [:],\n            source_url\n        ]",
@@ -17423,58 +17423,58 @@
                             ],
                             "edges": [
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345662a0>",
-                                    "B": "<src.operation.Operation object at 0x7f32347cbad0>",
+                                    "A": "<src.process.Process object at 0x7f181adee4e0>",
+                                    "B": "<src.operation.Operation object at 0x7f181ad56480>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345662a0>",
-                                    "B": "<src.process.Process object at 0x7f32345255b0>",
+                                    "A": "<src.process.Process object at 0x7f181adee4e0>",
+                                    "B": "<src.process.Process object at 0x7f181addb860>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345255b0>",
-                                    "B": "<src.operation.Operation object at 0x7f3234703230>",
+                                    "A": "<src.process.Process object at 0x7f181addb860>",
+                                    "B": "<src.operation.Operation object at 0x7f181ae5e720>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345662a0>",
-                                    "B": "<src.process.Process object at 0x7f32345661e0>",
+                                    "A": "<src.process.Process object at 0x7f181adee4e0>",
+                                    "B": "<src.process.Process object at 0x7f181adee810>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345661e0>",
-                                    "B": "<src.operation.Operation object at 0x7f3234536000>",
+                                    "A": "<src.process.Process object at 0x7f181adee810>",
+                                    "B": "<src.operation.Operation object at 0x7f181addbce0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345662a0>",
-                                    "B": "<src.process.Process object at 0x7f3234564860>",
+                                    "A": "<src.process.Process object at 0x7f181adee4e0>",
+                                    "B": "<src.process.Process object at 0x7f181adec9b0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f3234564860>",
-                                    "B": "<src.operation.Operation object at 0x7f3234526420>",
+                                    "A": "<src.process.Process object at 0x7f181adec9b0>",
+                                    "B": "<src.operation.Operation object at 0x7f181aea6630>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345662a0>",
-                                    "B": "<src.process.Process object at 0x7f3234566750>",
+                                    "A": "<src.process.Process object at 0x7f181adee4e0>",
+                                    "B": "<src.process.Process object at 0x7f181adeeae0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f3234566750>",
-                                    "B": "<src.operation.Operation object at 0x7f323466e570>",
+                                    "A": "<src.process.Process object at 0x7f181adeeae0>",
+                                    "B": "<src.operation.Operation object at 0x7f181ad0e870>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f32345662a0>",
-                                    "B": "<src.operation.Operation object at 0x7f32347f6690>",
+                                    "A": "<src.process.Process object at 0x7f181adee4e0>",
+                                    "B": "<src.operation.Operation object at 0x7f181ad3e990>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.operation.Operation object at 0x7f3234566390>",
-                                    "B": "<src.process.Process object at 0x7f32345662a0>",
+                                    "A": "<src.operation.Operation object at 0x7f181adee5a0>",
+                                    "B": "<src.process.Process object at 0x7f181adee4e0>",
                                     "label": ""
                                 }
                             ],
@@ -17485,7 +17485,7 @@
                 "ROSETTAFOLD2NA": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f32347683b0>",
+                            "id": "<src.operation.Operation object at 0x7f181ad3c740>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_multiqc_report = channel.empty()",
@@ -17493,7 +17493,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345803e0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac04770>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ROSETTAFOLD2NA_FASTA.out.versions)",
@@ -17501,7 +17501,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234580470>",
+                            "id": "<src.operation.Operation object at 0x7f181ac04800>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(RUN_ROSETTAFOLD2NA.out.versions)",
@@ -17509,7 +17509,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f3234580680>",
+                            "id": "<src.process.Process object at 0x7f181ac04a10>",
                             "name": "ROSETTAFOLD2NA_FASTA",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -17517,7 +17517,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345807a0>",
+                            "id": "<src.process.Process object at 0x7f181ac04b30>",
                             "name": "RUN_ROSETTAFOLD2NA",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -17525,92 +17525,92 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234580770>",
+                            "id": "<src.operation.Operation object at 0x7f181ac04b90>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_ROSETTAFOLD2NA.out.multiqc.map_modified { \u00a4139854438161712_0\u00a4 }.toSortedList().map_modified { \u00a4139854438161712_1\u00a4 }.set { ch_multiqc_report }",
+                            "xlabel": "RUN_ROSETTAFOLD2NA.out.multiqc.map_modified { \u00a4139743003692832_0\u00a4 }.toSortedList().map_modified { \u00a4139743003692832_1\u00a4 }.set { ch_multiqc_report }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234580860>",
+                            "id": "<src.operation.Operation object at 0x7f181ac04c50>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_ROSETTAFOLD2NA.out.pdb.map_modified { \u00a4139854438161712_2\u00a4 }.set { ch_pdb_final }",
+                            "xlabel": "RUN_ROSETTAFOLD2NA.out.pdb.map_modified { \u00a4139743003692832_2\u00a4 }.set { ch_pdb_final }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234580980>",
+                            "id": "<src.operation.Operation object at 0x7f181ac04d70>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_ROSETTAFOLD2NA.out.pae.map_modified { \u00a4139854438161712_2\u00a4 }.set { ch_pae_final }",
+                            "xlabel": "RUN_ROSETTAFOLD2NA.out.pae.map_modified { \u00a4139743003692832_2\u00a4 }.set { ch_pae_final }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234580aa0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac04e90>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_ROSETTAFOLD2NA.out.msa.map_modified { \u00a4139854438161712_2\u00a4 }.set { ch_msa_final }",
+                            "xlabel": "RUN_ROSETTAFOLD2NA.out.msa.map_modified { \u00a4139743003692832_2\u00a4 }.set { ch_msa_final }",
                             "fillcolor": "white",
                             "artificial": false
                         }
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f3234580680>",
-                            "B": "<src.operation.Operation object at 0x7f32345803e0>",
+                            "A": "<src.process.Process object at 0x7f181ac04a10>",
+                            "B": "<src.operation.Operation object at 0x7f181ac04770>",
                             "label": "ROSETTAFOLD2NA_FASTA.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345803e0>",
-                            "B": "<src.operation.Operation object at 0x7f32345803e0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac04770>",
+                            "B": "<src.operation.Operation object at 0x7f181ac04770>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234580470>",
-                            "B": "<src.operation.Operation object at 0x7f32345803e0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac04800>",
+                            "B": "<src.operation.Operation object at 0x7f181ac04770>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345807a0>",
-                            "B": "<src.operation.Operation object at 0x7f3234580470>",
+                            "A": "<src.process.Process object at 0x7f181ac04b30>",
+                            "B": "<src.operation.Operation object at 0x7f181ac04800>",
                             "label": "RUN_ROSETTAFOLD2NA.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345803e0>",
-                            "B": "<src.operation.Operation object at 0x7f3234580470>",
+                            "A": "<src.operation.Operation object at 0x7f181ac04770>",
+                            "B": "<src.operation.Operation object at 0x7f181ac04800>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234580470>",
-                            "B": "<src.operation.Operation object at 0x7f3234580470>",
+                            "A": "<src.operation.Operation object at 0x7f181ac04800>",
+                            "B": "<src.operation.Operation object at 0x7f181ac04800>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f3234580680>",
-                            "B": "<src.process.Process object at 0x7f32345807a0>",
+                            "A": "<src.process.Process object at 0x7f181ac04a10>",
+                            "B": "<src.process.Process object at 0x7f181ac04b30>",
                             "label": "ROSETTAFOLD2NA_FASTA.out.rf2na_input"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345807a0>",
-                            "B": "<src.operation.Operation object at 0x7f3234580770>",
+                            "A": "<src.process.Process object at 0x7f181ac04b30>",
+                            "B": "<src.operation.Operation object at 0x7f181ac04b90>",
                             "label": "RUN_ROSETTAFOLD2NA.out.multiqc"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345807a0>",
-                            "B": "<src.operation.Operation object at 0x7f3234580860>",
+                            "A": "<src.process.Process object at 0x7f181ac04b30>",
+                            "B": "<src.operation.Operation object at 0x7f181ac04c50>",
                             "label": "RUN_ROSETTAFOLD2NA.out.pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345807a0>",
-                            "B": "<src.operation.Operation object at 0x7f3234580980>",
+                            "A": "<src.process.Process object at 0x7f181ac04b30>",
+                            "B": "<src.operation.Operation object at 0x7f181ac04d70>",
                             "label": "RUN_ROSETTAFOLD2NA.out.pae"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345807a0>",
-                            "B": "<src.operation.Operation object at 0x7f3234580aa0>",
+                            "A": "<src.process.Process object at 0x7f181ac04b30>",
+                            "B": "<src.operation.Operation object at 0x7f181ac04e90>",
                             "label": "RUN_ROSETTAFOLD2NA.out.msa"
                         }
                     ],
@@ -17619,7 +17619,7 @@
                 "PREPARE_BOLTZ_DBS": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f32346e3890>",
+                            "id": "<src.operation.Operation object at 0x7f181ad3f830>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_boltz_ccd    = channel.value(file(boltz_ccd, checkIfExists: true))",
@@ -17627,7 +17627,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345838f0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac07920>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_boltz_model  = channel.value(file(boltz_model, checkIfExists: true))",
@@ -17635,7 +17635,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234583920>",
+                            "id": "<src.operation.Operation object at 0x7f181ac078f0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_boltz2_aff   = channel.value(file(boltz2_aff, checkIfExists: true))",
@@ -17643,7 +17643,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345839b0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac079b0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_boltz2_conf  = channel.value(file(boltz2_conf, checkIfExists: true))",
@@ -17651,7 +17651,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234583b00>",
+                            "id": "<src.operation.Operation object at 0x7f181ac07b00>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_boltz2_mols  = channel.value(file(boltz2_mols, checkIfExists: true))",
@@ -17659,15 +17659,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234583e00>",
+                            "id": "<src.operation.Operation object at 0x7f181ac07da0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_boltz_ccd = ARIA2_BOLTZ_CCD.out.downloaded_file.map_modified { \u00a4139854438104816_0\u00a4 }",
+                            "xlabel": "ch_boltz_ccd = ARIA2_BOLTZ_CCD.out.downloaded_file.map_modified { \u00a4139743003606192_0\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234583d70>",
+                            "id": "<src.operation.Operation object at 0x7f181ac07d70>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_BOLTZ_CCD.out.versions)",
@@ -17675,15 +17675,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234583dd0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac07dd0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_boltz_model = ARIA2_BOLTZ_MODEL.out.downloaded_file.map_modified { \u00a4139854438104816_1\u00a4 }",
+                            "xlabel": "ch_boltz_model = ARIA2_BOLTZ_MODEL.out.downloaded_file.map_modified { \u00a4139743003606192_1\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234583e60>",
+                            "id": "<src.operation.Operation object at 0x7f181ac07e60>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_BOLTZ_MODEL.out.versions)",
@@ -17691,15 +17691,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234583ef0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac07ef0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_boltz2_aff = ARIA2_BOLTZ2_AFF.out.downloaded_file.map_modified { \u00a4139854438104816_0\u00a4 }",
+                            "xlabel": "ch_boltz2_aff = ARIA2_BOLTZ2_AFF.out.downloaded_file.map_modified { \u00a4139743003606192_0\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458c050>",
+                            "id": "<src.operation.Operation object at 0x7f181ac18050>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_BOLTZ2_AFF.out.versions)",
@@ -17707,15 +17707,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458c0e0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac180e0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_boltz2_conf = ARIA2_BOLTZ2_CONF.out.downloaded_file.map_modified { \u00a4139854438104816_0\u00a4 }",
+                            "xlabel": "ch_boltz2_conf = ARIA2_BOLTZ2_CONF.out.downloaded_file.map_modified { \u00a4139743003606192_0\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458c170>",
+                            "id": "<src.operation.Operation object at 0x7f181ac18170>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_BOLTZ2_CONF.out.versions)",
@@ -17723,7 +17723,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458c200>",
+                            "id": "<src.operation.Operation object at 0x7f181ac18200>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_boltz2_mols = ARIA2_UNCOMPRESS.out.db",
@@ -17731,7 +17731,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458c2c0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac182c0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(ARIA2_UNCOMPRESS.out.versions)",
@@ -17739,7 +17739,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f323458c410>",
+                            "id": "<src.process.Process object at 0x7f181ac184a0>",
                             "name": "ARIA2_BOLTZ_CCD",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -17747,7 +17747,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458dd90>",
+                            "id": "<src.operation.Operation object at 0x7f181ac1a1b0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "[\n                [:],\n                boltz_ccd_link\n            ]",
@@ -17755,7 +17755,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f323458c470>",
+                            "id": "<src.process.Process object at 0x7f181ac18590>",
                             "name": "ARIA2_BOLTZ_MODEL",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -17763,7 +17763,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458d820>",
+                            "id": "<src.operation.Operation object at 0x7f181ac1a240>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "[\n                [:],\n                boltz_model_link\n            ]",
@@ -17771,7 +17771,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f323458c5c0>",
+                            "id": "<src.process.Process object at 0x7f181ac18680>",
                             "name": "ARIA2_BOLTZ2_AFF",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -17779,7 +17779,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458d3d0>",
+                            "id": "<src.operation.Operation object at 0x7f181aded100>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "[\n                [:],\n                boltz2_aff_link\n            ]",
@@ -17787,7 +17787,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f323458c6e0>",
+                            "id": "<src.process.Process object at 0x7f181ac18770>",
                             "name": "ARIA2_BOLTZ2_CONF",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -17795,7 +17795,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458dee0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac19850>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "[\n                [:],\n                boltz2_conf_link\n            ]",
@@ -17803,7 +17803,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f3234553770>",
+                            "id": "<src.operation.Operation object at 0x7f181ae5f770>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions     = channel.empty()",
@@ -17813,213 +17813,213 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f323458c410>",
-                            "B": "<src.operation.Operation object at 0x7f3234583e00>",
+                            "A": "<src.process.Process object at 0x7f181ac184a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07da0>",
                             "label": "ARIA2_BOLTZ_CCD.out.downloaded_file"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f323458c410>",
-                            "B": "<src.operation.Operation object at 0x7f3234583d70>",
+                            "A": "<src.process.Process object at 0x7f181ac184a0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07d70>",
                             "label": "ARIA2_BOLTZ_CCD.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234553770>",
-                            "B": "<src.operation.Operation object at 0x7f3234583d70>",
+                            "A": "<src.operation.Operation object at 0x7f181ae5f770>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07d70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234583d70>",
-                            "B": "<src.operation.Operation object at 0x7f3234583d70>",
+                            "A": "<src.operation.Operation object at 0x7f181ac07d70>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07d70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234583e60>",
-                            "B": "<src.operation.Operation object at 0x7f3234583d70>",
+                            "A": "<src.operation.Operation object at 0x7f181ac07e60>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07d70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c050>",
-                            "B": "<src.operation.Operation object at 0x7f3234583d70>",
+                            "A": "<src.operation.Operation object at 0x7f181ac18050>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07d70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c170>",
-                            "B": "<src.operation.Operation object at 0x7f3234583d70>",
+                            "A": "<src.operation.Operation object at 0x7f181ac18170>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07d70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c2c0>",
-                            "B": "<src.operation.Operation object at 0x7f3234583d70>",
+                            "A": "<src.operation.Operation object at 0x7f181ac182c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07d70>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f323458c470>",
-                            "B": "<src.operation.Operation object at 0x7f3234583dd0>",
+                            "A": "<src.process.Process object at 0x7f181ac18590>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07dd0>",
                             "label": "ARIA2_BOLTZ_MODEL.out.downloaded_file"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f323458c470>",
-                            "B": "<src.operation.Operation object at 0x7f3234583e60>",
+                            "A": "<src.process.Process object at 0x7f181ac18590>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07e60>",
                             "label": "ARIA2_BOLTZ_MODEL.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234553770>",
-                            "B": "<src.operation.Operation object at 0x7f3234583e60>",
+                            "A": "<src.operation.Operation object at 0x7f181ae5f770>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07e60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234583d70>",
-                            "B": "<src.operation.Operation object at 0x7f3234583e60>",
+                            "A": "<src.operation.Operation object at 0x7f181ac07d70>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07e60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234583e60>",
-                            "B": "<src.operation.Operation object at 0x7f3234583e60>",
+                            "A": "<src.operation.Operation object at 0x7f181ac07e60>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07e60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c050>",
-                            "B": "<src.operation.Operation object at 0x7f3234583e60>",
+                            "A": "<src.operation.Operation object at 0x7f181ac18050>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07e60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c170>",
-                            "B": "<src.operation.Operation object at 0x7f3234583e60>",
+                            "A": "<src.operation.Operation object at 0x7f181ac18170>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07e60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c2c0>",
-                            "B": "<src.operation.Operation object at 0x7f3234583e60>",
+                            "A": "<src.operation.Operation object at 0x7f181ac182c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07e60>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f323458c5c0>",
-                            "B": "<src.operation.Operation object at 0x7f3234583ef0>",
+                            "A": "<src.process.Process object at 0x7f181ac18680>",
+                            "B": "<src.operation.Operation object at 0x7f181ac07ef0>",
                             "label": "ARIA2_BOLTZ2_AFF.out.downloaded_file"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f323458c5c0>",
-                            "B": "<src.operation.Operation object at 0x7f323458c050>",
+                            "A": "<src.process.Process object at 0x7f181ac18680>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18050>",
                             "label": "ARIA2_BOLTZ2_AFF.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234553770>",
-                            "B": "<src.operation.Operation object at 0x7f323458c050>",
+                            "A": "<src.operation.Operation object at 0x7f181ae5f770>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18050>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234583d70>",
-                            "B": "<src.operation.Operation object at 0x7f323458c050>",
+                            "A": "<src.operation.Operation object at 0x7f181ac07d70>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18050>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234583e60>",
-                            "B": "<src.operation.Operation object at 0x7f323458c050>",
+                            "A": "<src.operation.Operation object at 0x7f181ac07e60>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18050>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c050>",
-                            "B": "<src.operation.Operation object at 0x7f323458c050>",
+                            "A": "<src.operation.Operation object at 0x7f181ac18050>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18050>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c170>",
-                            "B": "<src.operation.Operation object at 0x7f323458c050>",
+                            "A": "<src.operation.Operation object at 0x7f181ac18170>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18050>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c2c0>",
-                            "B": "<src.operation.Operation object at 0x7f323458c050>",
+                            "A": "<src.operation.Operation object at 0x7f181ac182c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18050>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f323458c6e0>",
-                            "B": "<src.operation.Operation object at 0x7f323458c0e0>",
+                            "A": "<src.process.Process object at 0x7f181ac18770>",
+                            "B": "<src.operation.Operation object at 0x7f181ac180e0>",
                             "label": "ARIA2_BOLTZ2_CONF.out.downloaded_file"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f323458c6e0>",
-                            "B": "<src.operation.Operation object at 0x7f323458c170>",
+                            "A": "<src.process.Process object at 0x7f181ac18770>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18170>",
                             "label": "ARIA2_BOLTZ2_CONF.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234553770>",
-                            "B": "<src.operation.Operation object at 0x7f323458c170>",
+                            "A": "<src.operation.Operation object at 0x7f181ae5f770>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18170>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234583d70>",
-                            "B": "<src.operation.Operation object at 0x7f323458c170>",
+                            "A": "<src.operation.Operation object at 0x7f181ac07d70>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18170>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234583e60>",
-                            "B": "<src.operation.Operation object at 0x7f323458c170>",
+                            "A": "<src.operation.Operation object at 0x7f181ac07e60>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18170>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c050>",
-                            "B": "<src.operation.Operation object at 0x7f323458c170>",
+                            "A": "<src.operation.Operation object at 0x7f181ac18050>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18170>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c170>",
-                            "B": "<src.operation.Operation object at 0x7f323458c170>",
+                            "A": "<src.operation.Operation object at 0x7f181ac18170>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18170>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c2c0>",
-                            "B": "<src.operation.Operation object at 0x7f323458c170>",
+                            "A": "<src.operation.Operation object at 0x7f181ac182c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac18170>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234553770>",
-                            "B": "<src.operation.Operation object at 0x7f323458c2c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ae5f770>",
+                            "B": "<src.operation.Operation object at 0x7f181ac182c0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234583d70>",
-                            "B": "<src.operation.Operation object at 0x7f323458c2c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac07d70>",
+                            "B": "<src.operation.Operation object at 0x7f181ac182c0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3234583e60>",
-                            "B": "<src.operation.Operation object at 0x7f323458c2c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac07e60>",
+                            "B": "<src.operation.Operation object at 0x7f181ac182c0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c050>",
-                            "B": "<src.operation.Operation object at 0x7f323458c2c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac18050>",
+                            "B": "<src.operation.Operation object at 0x7f181ac182c0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c170>",
-                            "B": "<src.operation.Operation object at 0x7f323458c2c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac18170>",
+                            "B": "<src.operation.Operation object at 0x7f181ac182c0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458c2c0>",
-                            "B": "<src.operation.Operation object at 0x7f323458c2c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac182c0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac182c0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458dd90>",
-                            "B": "<src.process.Process object at 0x7f323458c410>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1a1b0>",
+                            "B": "<src.process.Process object at 0x7f181ac184a0>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458d820>",
-                            "B": "<src.process.Process object at 0x7f323458c470>",
+                            "A": "<src.operation.Operation object at 0x7f181ac1a240>",
+                            "B": "<src.process.Process object at 0x7f181ac18590>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458d3d0>",
-                            "B": "<src.process.Process object at 0x7f323458c5c0>",
+                            "A": "<src.operation.Operation object at 0x7f181aded100>",
+                            "B": "<src.process.Process object at 0x7f181ac18680>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458dee0>",
-                            "B": "<src.process.Process object at 0x7f323458c6e0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac19850>",
+                            "B": "<src.process.Process object at 0x7f181ac18770>",
                             "label": ""
                         }
                     ],
@@ -18027,23 +18027,23 @@
                         "ARIA2_UNCOMPRESS": {
                             "nodes": [
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f323473cf50>",
+                                    "id": "<src.operation.Operation object at 0x7f181ae190d0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139853607482960_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743002325696_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32347851f0>",
+                                    "id": "<src.operation.Operation object at 0x7f181adc1310>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139853607482960_0\u00a4 }",
+                                    "xlabel": "ch_db = UNTAR (ARIA2.out.downloaded_file).untar.map_modified { \u00a4139743002325696_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f323458d3a0>",
+                                    "id": "<src.process.Process object at 0x7f181ac19490>",
                                     "name": "UNTAR",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -18051,15 +18051,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f323466d310>",
+                                    "id": "<src.operation.Operation object at 0x7f181adc1460>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139853607482960_0\u00a4 }",
+                                    "xlabel": "ch_db = GUNZIP (ARIA2.out.downloaded_file).gunzip.map_modified { \u00a4139743002325696_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f323458d670>",
+                                    "id": "<src.process.Process object at 0x7f181ac19730>",
                                     "name": "GUNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -18067,15 +18067,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f32345355b0>",
+                                    "id": "<src.operation.Operation object at 0x7f181adc1880>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139853607482960_0\u00a4 }",
+                                    "xlabel": "ch_db = ZSTD_DECOMPRESS (ARIA2.out.downloaded_file).decompressed.map_modified { \u00a4139743002325696_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f323458d8e0>",
+                                    "id": "<src.process.Process object at 0x7f181ac19a00>",
                                     "name": "ZSTD_DECOMPRESS",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -18083,15 +18083,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234525af0>",
+                                    "id": "<src.operation.Operation object at 0x7f181aed9bb0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139853607482960_1\u00a4 }",
+                                    "xlabel": "ch_db = UNZIP (ARIA2.out.downloaded_file).unzipped_archive.map_modified { \u00a4139743002325696_1\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f323458dc40>",
+                                    "id": "<src.process.Process object at 0x7f181ac19cd0>",
                                     "name": "UNZIP",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -18099,15 +18099,15 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f3234699b50>",
+                                    "id": "<src.operation.Operation object at 0x7f181add9ee0>",
                                     "name": "",
                                     "shape": "point",
-                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139853607482960_0\u00a4 }",
+                                    "xlabel": "ch_db = ARIA2.out.downloaded_file.map_modified { \u00a4139743002325696_0\u00a4 }",
                                     "fillcolor": "white",
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f323458ce00>",
+                                    "id": "<src.operation.Operation object at 0x7f181ac18f20>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "ch_db = channel.empty()",
@@ -18115,7 +18115,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.process.Process object at 0x7f323458d010>",
+                                    "id": "<src.process.Process object at 0x7f181ac19100>",
                                     "name": "ARIA2",
                                     "shape": "ellipse",
                                     "xlabel": "",
@@ -18123,7 +18123,7 @@
                                     "artificial": false
                                 },
                                 {
-                                    "id": "<src.operation.Operation object at 0x7f323458d0d0>",
+                                    "id": "<src.operation.Operation object at 0x7f181ac19190>",
                                     "name": "",
                                     "shape": "point",
                                     "xlabel": "[\n            [:],\n            source_url\n        ]",
@@ -18133,58 +18133,58 @@
                             ],
                             "edges": [
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d010>",
-                                    "B": "<src.operation.Operation object at 0x7f323473cf50>",
+                                    "A": "<src.process.Process object at 0x7f181ac19100>",
+                                    "B": "<src.operation.Operation object at 0x7f181ae190d0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d010>",
-                                    "B": "<src.process.Process object at 0x7f323458d3a0>",
+                                    "A": "<src.process.Process object at 0x7f181ac19100>",
+                                    "B": "<src.process.Process object at 0x7f181ac19490>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d3a0>",
-                                    "B": "<src.operation.Operation object at 0x7f32347851f0>",
+                                    "A": "<src.process.Process object at 0x7f181ac19490>",
+                                    "B": "<src.operation.Operation object at 0x7f181adc1310>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d010>",
-                                    "B": "<src.process.Process object at 0x7f323458d670>",
+                                    "A": "<src.process.Process object at 0x7f181ac19100>",
+                                    "B": "<src.process.Process object at 0x7f181ac19730>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d670>",
-                                    "B": "<src.operation.Operation object at 0x7f323466d310>",
+                                    "A": "<src.process.Process object at 0x7f181ac19730>",
+                                    "B": "<src.operation.Operation object at 0x7f181adc1460>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d010>",
-                                    "B": "<src.process.Process object at 0x7f323458d8e0>",
+                                    "A": "<src.process.Process object at 0x7f181ac19100>",
+                                    "B": "<src.process.Process object at 0x7f181ac19a00>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d8e0>",
-                                    "B": "<src.operation.Operation object at 0x7f32345355b0>",
+                                    "A": "<src.process.Process object at 0x7f181ac19a00>",
+                                    "B": "<src.operation.Operation object at 0x7f181adc1880>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d010>",
-                                    "B": "<src.process.Process object at 0x7f323458dc40>",
+                                    "A": "<src.process.Process object at 0x7f181ac19100>",
+                                    "B": "<src.process.Process object at 0x7f181ac19cd0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458dc40>",
-                                    "B": "<src.operation.Operation object at 0x7f3234525af0>",
+                                    "A": "<src.process.Process object at 0x7f181ac19cd0>",
+                                    "B": "<src.operation.Operation object at 0x7f181aed9bb0>",
                                     "label": ""
                                 },
                                 {
-                                    "A": "<src.process.Process object at 0x7f323458d010>",
-                                    "B": "<src.operation.Operation object at 0x7f3234699b50>",
+                                    "A": "<src.process.Process object at 0x7f181ac19100>",
+                                    "B": "<src.operation.Operation object at 0x7f181add9ee0>",
                                     "label": "ARIA2.out.downloaded_file"
                                 },
                                 {
-                                    "A": "<src.operation.Operation object at 0x7f323458d0d0>",
-                                    "B": "<src.process.Process object at 0x7f323458d010>",
+                                    "A": "<src.operation.Operation object at 0x7f181ac19190>",
+                                    "B": "<src.process.Process object at 0x7f181ac19100>",
                                     "label": ""
                                 }
                             ],
@@ -18195,7 +18195,7 @@
                 "BOLTZ": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345ca780>",
+                            "id": "<src.operation.Operation object at 0x7f181ac56b10>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(MULTIFASTA_TO_CSV.out.versions)",
@@ -18203,7 +18203,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345ca810>",
+                            "id": "<src.operation.Operation object at 0x7f181ac56ba0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(MMSEQS_COLABFOLDSEARCH.out.versions)",
@@ -18211,7 +18211,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345ca870>",
+                            "id": "<src.operation.Operation object at 0x7f181ac56c30>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(SPLIT_MSA.out.versions)",
@@ -18219,7 +18219,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345ca9c0>",
+                            "id": "<src.process.Process object at 0x7f181ac56d80>",
                             "name": "MULTIFASTA_TO_CSV",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -18227,7 +18227,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345cacc0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac57080>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_input.multimer",
@@ -18235,7 +18235,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345caa80>",
+                            "id": "<src.process.Process object at 0x7f181ac56e40>",
                             "name": "MMSEQS_COLABFOLDSEARCH",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -18243,7 +18243,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345cad80>",
+                            "id": "<src.operation.Operation object at 0x7f181ac555e0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_input.monomer.mix(MULTIFASTA_TO_CSV.out.input_csv)",
@@ -18251,7 +18251,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345cabd0>",
+                            "id": "<src.process.Process object at 0x7f181ac56f90>",
                             "name": "SPLIT_MSA",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -18259,7 +18259,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345cab10>",
+                            "id": "<src.operation.Operation object at 0x7f181ac56ed0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_input.monomer.join(SPLIT_MSA.out.msa_csv).mix(\n                ch_input.multimer.join(SPLIT_MSA.out.msa_csv)\n            ).set{ch_prepare_fasta}",
@@ -18267,15 +18267,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345cb3b0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac575f0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_input.multimer.mix(ch_input.monomer).map_modified { \u00a4139854438160944_2\u00a4 }.set{ch_prepare_fasta}",
+                            "xlabel": "ch_input.multimer.mix(ch_input.monomer).map_modified { \u00a4139743003690240_2\u00a4 }.set{ch_prepare_fasta}",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f323458df10>",
+                            "id": "<src.operation.Operation object at 0x7f181ac56540>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions       = ch_versions.mix(RUN_BOLTZ.out.versions)",
@@ -18283,7 +18283,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345c90a0>",
+                            "id": "<src.process.Process object at 0x7f181adece00>",
                             "name": "BOLTZ_FASTA",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -18291,7 +18291,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32345c8500>",
+                            "id": "<src.process.Process object at 0x7f181ac3ecc0>",
                             "name": "RUN_BOLTZ",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -18299,7 +18299,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345c8470>",
+                            "id": "<src.operation.Operation object at 0x7f181ac3edb0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_samplesheet.branch { it ->\n            fasta: it[1].extension == 'fasta' $OR$ it[1].extension == 'fa'\n            yaml: it[1].extension == 'yaml' $OR$ it[1].extension == 'yml'\n        }.set { ch_input_by_ext }",
@@ -18307,246 +18307,246 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345c9f40>",
+                            "id": "<src.operation.Operation object at 0x7f181ac3c3b0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_input_by_ext.fasta.join(\n            ch_input_by_ext.fasta.map_modified { \u00a4139854438160944_0\u00a4 }\n        ).map_modified { \u00a4139854438160944_1\u00a4 }.branch { it ->\n            multimer: it[0].cnt > 1\n            monomer: it[0].cnt == 1\n        }.set{ch_input}",
+                            "xlabel": "ch_input_by_ext.fasta.join(\n            ch_input_by_ext.fasta.map_modified { \u00a4139743003690240_0\u00a4 }\n        ).map_modified { \u00a4139743003690240_1\u00a4 }.branch { it ->\n            multimer: it[0].cnt > 1\n            monomer: it[0].cnt == 1\n        }.set{ch_input}",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345ca060>",
+                            "id": "<src.operation.Operation object at 0x7f181ac56660>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_input_by_ext.yaml.map_modified { \u00a4139854438160944_3\u00a4 }  .mix(BOLTZ_FASTA.out.formatted_fasta)    .set { ch_boltz_input }",
+                            "xlabel": "ch_input_by_ext.yaml.map_modified { \u00a4139743003690240_3\u00a4 }  .mix(BOLTZ_FASTA.out.formatted_fasta)    .set { ch_boltz_input }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345ca180>",
+                            "id": "<src.operation.Operation object at 0x7f181ac54e30>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_BOLTZ.out.pdb.map_modified { \u00a4139854438160944_4\u00a4 }.set {ch_pdb}",
+                            "xlabel": "RUN_BOLTZ.out.pdb.map_modified { \u00a4139743003690240_4\u00a4 }.set {ch_pdb}",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345ca2a0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac54080>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_BOLTZ.out.top_ranked_pdb.map_modified { \u00a4139854438160944_4\u00a4 }.set { ch_top_ranked_pdb }",
+                            "xlabel": "RUN_BOLTZ.out.top_ranked_pdb.map_modified { \u00a4139743003690240_4\u00a4 }.set { ch_top_ranked_pdb }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345ca3c0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac56750>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_BOLTZ.out.msa_raw.map_modified { \u00a4139854438160944_4\u00a4 }.set { ch_msa }",
+                            "xlabel": "RUN_BOLTZ.out.msa_raw.map_modified { \u00a4139743003690240_4\u00a4 }.set { ch_msa }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345ca4e0>",
+                            "id": "<src.operation.Operation object at 0x7f181ac56870>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_BOLTZ.out.pae_raw.map_modified { \u00a4139854438160944_4\u00a4 }.set { ch_pae }",
+                            "xlabel": "RUN_BOLTZ.out.pae_raw.map_modified { \u00a4139743003690240_4\u00a4 }.set { ch_pae }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32345ca600>",
+                            "id": "<src.operation.Operation object at 0x7f181ac56990>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "RUN_BOLTZ.out.multiqc.map_modified { \u00a4139854438160944_5\u00a4 }.collect(sort: true).map_modified { \u00a4139854438160944_6\u00a4 }.set { ch_multiqc_report  }",
+                            "xlabel": "RUN_BOLTZ.out.multiqc.map_modified { \u00a4139743003690240_5\u00a4 }.collect(sort: true).map_modified { \u00a4139743003690240_6\u00a4 }.set { ch_multiqc_report  }",
                             "fillcolor": "white",
                             "artificial": false
                         }
                     ],
                     "edges": [
                         {
-                            "A": "<src.process.Process object at 0x7f32345ca9c0>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca780>",
+                            "A": "<src.process.Process object at 0x7f181ac56d80>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56b10>",
                             "label": "MULTIFASTA_TO_CSV.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345ca780>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca780>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56b10>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56b10>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345ca810>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca780>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56ba0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56b10>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345ca870>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca780>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56c30>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56b10>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458df10>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca780>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56540>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56b10>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345caa80>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca810>",
+                            "A": "<src.process.Process object at 0x7f181ac56e40>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56ba0>",
                             "label": "MMSEQS_COLABFOLDSEARCH.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345ca780>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca810>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56b10>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56ba0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345ca810>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca810>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56ba0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56ba0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345ca870>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca810>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56c30>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56ba0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458df10>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca810>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56540>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56ba0>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345cabd0>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca870>",
+                            "A": "<src.process.Process object at 0x7f181ac56f90>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56c30>",
                             "label": "SPLIT_MSA.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345ca780>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca870>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56b10>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56c30>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345ca810>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca870>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56ba0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56c30>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345ca870>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca870>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56c30>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56c30>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458df10>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca870>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56540>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56c30>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c9f40>",
-                            "B": "<src.operation.Operation object at 0x7f32345cacc0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3c3b0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac57080>",
                             "label": "ch_input"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345cacc0>",
-                            "B": "<src.process.Process object at 0x7f32345ca9c0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac57080>",
+                            "B": "<src.process.Process object at 0x7f181ac56d80>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345ca9c0>",
-                            "B": "<src.operation.Operation object at 0x7f32345cad80>",
+                            "A": "<src.process.Process object at 0x7f181ac56d80>",
+                            "B": "<src.operation.Operation object at 0x7f181ac555e0>",
                             "label": "MULTIFASTA_TO_CSV.out.input_csv"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c9f40>",
-                            "B": "<src.operation.Operation object at 0x7f32345cad80>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3c3b0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac555e0>",
                             "label": "ch_input"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345cad80>",
-                            "B": "<src.process.Process object at 0x7f32345caa80>",
+                            "A": "<src.operation.Operation object at 0x7f181ac555e0>",
+                            "B": "<src.process.Process object at 0x7f181ac56e40>",
                             "label": ""
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345caa80>",
-                            "B": "<src.process.Process object at 0x7f32345cabd0>",
+                            "A": "<src.process.Process object at 0x7f181ac56e40>",
+                            "B": "<src.process.Process object at 0x7f181ac56f90>",
                             "label": "MMSEQS_COLABFOLDSEARCH.out.a3m"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345cabd0>",
-                            "B": "<src.operation.Operation object at 0x7f32345cab10>",
+                            "A": "<src.process.Process object at 0x7f181ac56f90>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56ed0>",
                             "label": "SPLIT_MSA.out.msa_csv"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c9f40>",
-                            "B": "<src.operation.Operation object at 0x7f32345cab10>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3c3b0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56ed0>",
                             "label": "ch_input"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c9f40>",
-                            "B": "<src.operation.Operation object at 0x7f32345cb3b0>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3c3b0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac575f0>",
                             "label": "ch_input"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c8500>",
-                            "B": "<src.operation.Operation object at 0x7f323458df10>",
+                            "A": "<src.process.Process object at 0x7f181ac3ecc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56540>",
                             "label": "RUN_BOLTZ.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345ca780>",
-                            "B": "<src.operation.Operation object at 0x7f323458df10>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56b10>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56540>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345ca810>",
-                            "B": "<src.operation.Operation object at 0x7f323458df10>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56ba0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56540>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345ca870>",
-                            "B": "<src.operation.Operation object at 0x7f323458df10>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56c30>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56540>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f323458df10>",
-                            "B": "<src.operation.Operation object at 0x7f323458df10>",
+                            "A": "<src.operation.Operation object at 0x7f181ac56540>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56540>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8470>",
-                            "B": "<src.operation.Operation object at 0x7f32345c9f40>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3edb0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac3c3b0>",
                             "label": "ch_input_by_ext"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c90a0>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca060>",
+                            "A": "<src.process.Process object at 0x7f181adece00>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56660>",
                             "label": "BOLTZ_FASTA.out.formatted_fasta"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32345c8470>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca060>",
+                            "A": "<src.operation.Operation object at 0x7f181ac3edb0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56660>",
                             "label": "ch_input_by_ext"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c8500>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca180>",
+                            "A": "<src.process.Process object at 0x7f181ac3ecc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54e30>",
                             "label": "RUN_BOLTZ.out.pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c8500>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca2a0>",
+                            "A": "<src.process.Process object at 0x7f181ac3ecc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac54080>",
                             "label": "RUN_BOLTZ.out.top_ranked_pdb"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c8500>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca3c0>",
+                            "A": "<src.process.Process object at 0x7f181ac3ecc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56750>",
                             "label": "RUN_BOLTZ.out.msa_raw"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c8500>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca4e0>",
+                            "A": "<src.process.Process object at 0x7f181ac3ecc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56870>",
                             "label": "RUN_BOLTZ.out.pae_raw"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32345c8500>",
-                            "B": "<src.operation.Operation object at 0x7f32345ca600>",
+                            "A": "<src.process.Process object at 0x7f181ac3ecc0>",
+                            "B": "<src.operation.Operation object at 0x7f181ac56990>",
                             "label": "RUN_BOLTZ.out.multiqc"
                         }
                     ],
@@ -18555,7 +18555,7 @@
                 "POST_PROCESSING": {
                     "nodes": [
                         {
-                            "id": "<src.operation.Operation object at 0x7f3266a92660>",
+                            "id": "<src.operation.Operation object at 0x7f187406b8f0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_dummy_file = channel.fromPath('$projectDir/assets/NO_FILE')",
@@ -18563,23 +18563,23 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b4e90>",
+                            "id": "<src.operation.Operation object at 0x7f181af35df0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "esm = esm.map_modified { \u00a4139854438162672_0\u00a4 }.merge(ch_dummy_file)",
+                            "xlabel": "esm = esm.map_modified { \u00a4139743003694992_0\u00a4 }.merge(ch_dummy_file)",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b5400>",
+                            "id": "<src.operation.Operation object at 0x7f181af4dbb0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "not_esm = not_esm.map_modified { \u00a4139854438162672_2\u00a4 }.join(GENERATE_REPORT.out.sequence_coverage)",
+                            "xlabel": "not_esm = not_esm.map_modified { \u00a4139743003694992_2\u00a4 }.join(GENERATE_REPORT.out.sequence_coverage)",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b54c0>",
+                            "id": "<src.operation.Operation object at 0x7f181af4dc10>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(COMPARE_STRUCTURES.out.versions)",
@@ -18587,7 +18587,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348b55e0>",
+                            "id": "<src.process.Process object at 0x7f181af4dd60>",
                             "name": "COMPARE_STRUCTURES",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -18595,31 +18595,31 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b5ca0>",
+                            "id": "<src.operation.Operation object at 0x7f181af4e090>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_comparison_report_input.map_modified { \u00a4139854438162672_5\u00a4 }",
+                            "xlabel": "ch_comparison_report_input.map_modified { \u00a4139743003694992_5\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b5c40>",
+                            "id": "<src.operation.Operation object at 0x7f181af4e660>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_comparison_report_input.map_modified { \u00a4139854438162672_6\u00a4 }",
+                            "xlabel": "ch_comparison_report_input.map_modified { \u00a4139743003694992_6\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b5eb0>",
+                            "id": "<src.operation.Operation object at 0x7f181af4e780>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_comparison_report_input.map_modified { \u00a4139854438162672_7\u00a4 }",
+                            "xlabel": "ch_comparison_report_input.map_modified { \u00a4139743003694992_7\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b55b0>",
+                            "id": "<src.operation.Operation object at 0x7f181af4de20>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "def esm = ch_top_ranked_model.filter { it ->it[0].model == 'esmfold' }",
@@ -18627,7 +18627,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b5760>",
+                            "id": "<src.operation.Operation object at 0x7f181af4dee0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "def not_esm = ch_top_ranked_model.filter { it -> it[0].model != 'esmfold' }",
@@ -18635,7 +18635,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b5880>",
+                            "id": "<src.operation.Operation object at 0x7f181af4e000>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "not_esm.mix(esm).set{ch_comparison_report_files}",
@@ -18643,15 +18643,15 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b59a0>",
+                            "id": "<src.operation.Operation object at 0x7f181af4e150>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_comparison_report_files.map_modified { \u00a4139854438162672_3\u00a4 }.groupTuple(by: [0], size: requested_modes_size).map_modified { \u00a4139854438162672_4\u00a4 }.set { ch_comparison_report_input }",
+                            "xlabel": "ch_comparison_report_files.map_modified { \u00a4139743003694992_3\u00a4 }.groupTuple(by: [0], size: requested_modes_size).map_modified { \u00a4139743003694992_4\u00a4 }.set { ch_comparison_report_input }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b4b30>",
+                            "id": "<src.operation.Operation object at 0x7f181af4d580>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_versions = ch_versions.mix(GENERATE_REPORT.out.versions)",
@@ -18659,7 +18659,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348b4d10>",
+                            "id": "<src.process.Process object at 0x7f189a162960>",
                             "name": "GENERATE_REPORT",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -18667,7 +18667,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348a6030>",
+                            "id": "<src.operation.Operation object at 0x7f18741868a0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_foldseek_db = channel.value([\n            [\n                id: foldseek_db,\n            ],\n            file(foldseek_db_path, checkIfExists: true)\n        ])",
@@ -18675,7 +18675,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348b6240>",
+                            "id": "<src.process.Process object at 0x7f181af4ea20>",
                             "name": "FOLDSEEK_EASYSEARCH",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -18683,7 +18683,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32661b6510>",
+                            "id": "<src.operation.Operation object at 0x7f1874186c60>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "summary_params           = paramsSummaryMap(workflow, parameters_schema: 'nextflow_schema.json')",
@@ -18691,7 +18691,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b65a0>",
+                            "id": "<src.operation.Operation object at 0x7f181af4ede0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_workflow_summary      = channel.value(paramsSummaryMultiqc(summary_params))",
@@ -18699,7 +18699,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b65d0>",
+                            "id": "<src.operation.Operation object at 0x7f181af4ed80>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_methods_description   = channel.value(methodsDescriptionText(ch_multiqc_methods_description))",
@@ -18707,7 +18707,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b6690>",
+                            "id": "<src.operation.Operation object at 0x7f181af4ea50>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_multiqc_files = channel.empty()",
@@ -18715,7 +18715,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b6720>",
+                            "id": "<src.operation.Operation object at 0x7f181af4ef30>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_multiqc_files = ch_multiqc_files.mix(ch_workflow_summary.collectFile(name: 'workflow_summary_mqc.yaml'))",
@@ -18723,7 +18723,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b67b0>",
+                            "id": "<src.operation.Operation object at 0x7f181af4efc0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_multiqc_files = ch_multiqc_files.mix(ch_methods_description.collectFile(name: 'methods_description_mqc.yaml'))",
@@ -18731,7 +18731,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b6840>",
+                            "id": "<src.operation.Operation object at 0x7f181af4f050>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_multiqc_files = ch_multiqc_files.mix(ch_collated_versions)",
@@ -18739,7 +18739,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b6990>",
+                            "id": "<src.operation.Operation object at 0x7f181af4f1a0>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_multiqc_report = MULTIQC.out.report.toList()",
@@ -18747,7 +18747,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.process.Process object at 0x7f32348b6b70>",
+                            "id": "<src.process.Process object at 0x7f181af4f350>",
                             "name": "MULTIQC",
                             "shape": "ellipse",
                             "xlabel": "",
@@ -18755,31 +18755,31 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b6b40>",
+                            "id": "<src.operation.Operation object at 0x7f181af4f3e0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_multiqc_rep.combine(\n                    ch_multiqc_files.collect().map_modified { \u00a4139854438162672_8\u00a4 }\n                ).map_modified { \u00a4139854438162672_9\u00a4 }",
+                            "xlabel": "ch_multiqc_rep.combine(\n                    ch_multiqc_files.collect().map_modified { \u00a4139743003694992_8\u00a4 }\n                ).map_modified { \u00a4139743003694992_9\u00a4 }",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b6fc0>",
+                            "id": "<src.operation.Operation object at 0x7f181af4f6e0>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_multiqc_custom_config.collect().ifEmpty_modified (\u00a4139854438162672_1\u00a4)",
+                            "xlabel": "ch_multiqc_custom_config.collect().ifEmpty_modified (\u00a4139743003694992_1\u00a4)",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b6f60>",
+                            "id": "<src.operation.Operation object at 0x7f187416f920>",
                             "name": "",
                             "shape": "point",
-                            "xlabel": "ch_multiqc_logo.collect().ifEmpty_modified (\u00a4139854438162672_1\u00a4)",
+                            "xlabel": "ch_multiqc_logo.collect().ifEmpty_modified (\u00a4139743003694992_1\u00a4)",
                             "fillcolor": "white",
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348b7260>",
+                            "id": "<src.operation.Operation object at 0x7f181af4fa40>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "[]",
@@ -18787,7 +18787,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32349b72c0>",
+                            "id": "<src.operation.Operation object at 0x7f181af4fa10>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "[]",
@@ -18795,7 +18795,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348a5fd0>",
+                            "id": "<src.operation.Operation object at 0x7f1874185310>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_comparison_report_files = channel.empty()",
@@ -18803,7 +18803,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348a55b0>",
+                            "id": "<src.operation.Operation object at 0x7f181af4d400>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "ch_multiqc_report = channel.empty()",
@@ -18811,7 +18811,7 @@
                             "artificial": false
                         },
                         {
-                            "id": "<src.operation.Operation object at 0x7f32348a5f40>",
+                            "id": "<src.operation.Operation object at 0x7f181af4d460>",
                             "name": "",
                             "shape": "point",
                             "xlabel": "softwareVersionsToYAML(ch_versions).collectFile(\n            storeDir: '${outdir}/pipeline_info',\n            name: 'nf_core_'  +  'proteinfold_software_'  + 'mqc_'  + 'versions.yml',\n            sort: true,\n            newLine: true\n        ).set { ch_collated_versions }",
@@ -18821,233 +18821,233 @@
                     ],
                     "edges": [
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b4e90>",
-                            "B": "<src.operation.Operation object at 0x7f32348b4e90>",
+                            "A": "<src.operation.Operation object at 0x7f181af35df0>",
+                            "B": "<src.operation.Operation object at 0x7f181af35df0>",
                             "label": "esm"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f3266a92660>",
-                            "B": "<src.operation.Operation object at 0x7f32348b4e90>",
+                            "A": "<src.operation.Operation object at 0x7f187406b8f0>",
+                            "B": "<src.operation.Operation object at 0x7f181af35df0>",
                             "label": "ch_dummy_file"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348b4d10>",
-                            "B": "<src.operation.Operation object at 0x7f32348b5400>",
+                            "A": "<src.process.Process object at 0x7f189a162960>",
+                            "B": "<src.operation.Operation object at 0x7f181af4dbb0>",
                             "label": "GENERATE_REPORT.out.sequence_coverage"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b5400>",
-                            "B": "<src.operation.Operation object at 0x7f32348b5400>",
+                            "A": "<src.operation.Operation object at 0x7f181af4dbb0>",
+                            "B": "<src.operation.Operation object at 0x7f181af4dbb0>",
                             "label": "not_esm"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348b55e0>",
-                            "B": "<src.operation.Operation object at 0x7f32348b54c0>",
+                            "A": "<src.process.Process object at 0x7f181af4dd60>",
+                            "B": "<src.operation.Operation object at 0x7f181af4dc10>",
                             "label": "COMPARE_STRUCTURES.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b4b30>",
-                            "B": "<src.operation.Operation object at 0x7f32348b54c0>",
+                            "A": "<src.operation.Operation object at 0x7f181af4d580>",
+                            "B": "<src.operation.Operation object at 0x7f181af4dc10>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b54c0>",
-                            "B": "<src.operation.Operation object at 0x7f32348b54c0>",
+                            "A": "<src.operation.Operation object at 0x7f181af4dc10>",
+                            "B": "<src.operation.Operation object at 0x7f181af4dc10>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b59a0>",
-                            "B": "<src.operation.Operation object at 0x7f32348b5ca0>",
+                            "A": "<src.operation.Operation object at 0x7f181af4e150>",
+                            "B": "<src.operation.Operation object at 0x7f181af4e090>",
                             "label": "ch_comparison_report_input"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b5ca0>",
-                            "B": "<src.process.Process object at 0x7f32348b55e0>",
+                            "A": "<src.operation.Operation object at 0x7f181af4e090>",
+                            "B": "<src.process.Process object at 0x7f181af4dd60>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b59a0>",
-                            "B": "<src.operation.Operation object at 0x7f32348b5c40>",
+                            "A": "<src.operation.Operation object at 0x7f181af4e150>",
+                            "B": "<src.operation.Operation object at 0x7f181af4e660>",
                             "label": "ch_comparison_report_input"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b5c40>",
-                            "B": "<src.process.Process object at 0x7f32348b55e0>",
+                            "A": "<src.operation.Operation object at 0x7f181af4e660>",
+                            "B": "<src.process.Process object at 0x7f181af4dd60>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b59a0>",
-                            "B": "<src.operation.Operation object at 0x7f32348b5eb0>",
+                            "A": "<src.operation.Operation object at 0x7f181af4e150>",
+                            "B": "<src.operation.Operation object at 0x7f181af4e780>",
                             "label": "ch_comparison_report_input"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b5eb0>",
-                            "B": "<src.process.Process object at 0x7f32348b55e0>",
+                            "A": "<src.operation.Operation object at 0x7f181af4e780>",
+                            "B": "<src.process.Process object at 0x7f181af4dd60>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b5400>",
-                            "B": "<src.operation.Operation object at 0x7f32348b5880>",
+                            "A": "<src.operation.Operation object at 0x7f181af4dbb0>",
+                            "B": "<src.operation.Operation object at 0x7f181af4e000>",
                             "label": "not_esm"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b4e90>",
-                            "B": "<src.operation.Operation object at 0x7f32348b5880>",
+                            "A": "<src.operation.Operation object at 0x7f181af35df0>",
+                            "B": "<src.operation.Operation object at 0x7f181af4e000>",
                             "label": "esm"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348a5fd0>",
-                            "B": "<src.operation.Operation object at 0x7f32348b59a0>",
+                            "A": "<src.operation.Operation object at 0x7f1874185310>",
+                            "B": "<src.operation.Operation object at 0x7f181af4e150>",
                             "label": "ch_comparison_report_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b5880>",
-                            "B": "<src.operation.Operation object at 0x7f32348b59a0>",
+                            "A": "<src.operation.Operation object at 0x7f181af4e000>",
+                            "B": "<src.operation.Operation object at 0x7f181af4e150>",
                             "label": "ch_comparison_report_files"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348b4d10>",
-                            "B": "<src.operation.Operation object at 0x7f32348b4b30>",
+                            "A": "<src.process.Process object at 0x7f189a162960>",
+                            "B": "<src.operation.Operation object at 0x7f181af4d580>",
                             "label": "GENERATE_REPORT.out.versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b4b30>",
-                            "B": "<src.operation.Operation object at 0x7f32348b4b30>",
+                            "A": "<src.operation.Operation object at 0x7f181af4d580>",
+                            "B": "<src.operation.Operation object at 0x7f181af4d580>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b54c0>",
-                            "B": "<src.operation.Operation object at 0x7f32348b4b30>",
+                            "A": "<src.operation.Operation object at 0x7f181af4dc10>",
+                            "B": "<src.operation.Operation object at 0x7f181af4d580>",
                             "label": "ch_versions"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32661b6510>",
-                            "B": "<src.operation.Operation object at 0x7f32348b65a0>",
+                            "A": "<src.operation.Operation object at 0x7f1874186c60>",
+                            "B": "<src.operation.Operation object at 0x7f181af4ede0>",
                             "label": "summary_params"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6690>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6720>",
+                            "A": "<src.operation.Operation object at 0x7f181af4ea50>",
+                            "B": "<src.operation.Operation object at 0x7f181af4ef30>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6720>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6720>",
+                            "A": "<src.operation.Operation object at 0x7f181af4ef30>",
+                            "B": "<src.operation.Operation object at 0x7f181af4ef30>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b67b0>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6720>",
+                            "A": "<src.operation.Operation object at 0x7f181af4efc0>",
+                            "B": "<src.operation.Operation object at 0x7f181af4ef30>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6840>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6720>",
+                            "A": "<src.operation.Operation object at 0x7f181af4f050>",
+                            "B": "<src.operation.Operation object at 0x7f181af4ef30>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b65a0>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6720>",
+                            "A": "<src.operation.Operation object at 0x7f181af4ede0>",
+                            "B": "<src.operation.Operation object at 0x7f181af4ef30>",
                             "label": "ch_workflow_summary"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6690>",
-                            "B": "<src.operation.Operation object at 0x7f32348b67b0>",
+                            "A": "<src.operation.Operation object at 0x7f181af4ea50>",
+                            "B": "<src.operation.Operation object at 0x7f181af4efc0>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6720>",
-                            "B": "<src.operation.Operation object at 0x7f32348b67b0>",
+                            "A": "<src.operation.Operation object at 0x7f181af4ef30>",
+                            "B": "<src.operation.Operation object at 0x7f181af4efc0>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b67b0>",
-                            "B": "<src.operation.Operation object at 0x7f32348b67b0>",
+                            "A": "<src.operation.Operation object at 0x7f181af4efc0>",
+                            "B": "<src.operation.Operation object at 0x7f181af4efc0>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6840>",
-                            "B": "<src.operation.Operation object at 0x7f32348b67b0>",
+                            "A": "<src.operation.Operation object at 0x7f181af4f050>",
+                            "B": "<src.operation.Operation object at 0x7f181af4efc0>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b65d0>",
-                            "B": "<src.operation.Operation object at 0x7f32348b67b0>",
+                            "A": "<src.operation.Operation object at 0x7f181af4ed80>",
+                            "B": "<src.operation.Operation object at 0x7f181af4efc0>",
                             "label": "ch_methods_description"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6690>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6840>",
+                            "A": "<src.operation.Operation object at 0x7f181af4ea50>",
+                            "B": "<src.operation.Operation object at 0x7f181af4f050>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6720>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6840>",
+                            "A": "<src.operation.Operation object at 0x7f181af4ef30>",
+                            "B": "<src.operation.Operation object at 0x7f181af4f050>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b67b0>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6840>",
+                            "A": "<src.operation.Operation object at 0x7f181af4efc0>",
+                            "B": "<src.operation.Operation object at 0x7f181af4f050>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6840>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6840>",
+                            "A": "<src.operation.Operation object at 0x7f181af4f050>",
+                            "B": "<src.operation.Operation object at 0x7f181af4f050>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348a5f40>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6840>",
+                            "A": "<src.operation.Operation object at 0x7f181af4d460>",
+                            "B": "<src.operation.Operation object at 0x7f181af4f050>",
                             "label": "ch_collated_versions"
                         },
                         {
-                            "A": "<src.process.Process object at 0x7f32348b6b70>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6990>",
+                            "A": "<src.process.Process object at 0x7f181af4f350>",
+                            "B": "<src.operation.Operation object at 0x7f181af4f1a0>",
                             "label": "MULTIQC.out.report"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6690>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6b40>",
+                            "A": "<src.operation.Operation object at 0x7f181af4ea50>",
+                            "B": "<src.operation.Operation object at 0x7f181af4f3e0>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6720>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6b40>",
+                            "A": "<src.operation.Operation object at 0x7f181af4ef30>",
+                            "B": "<src.operation.Operation object at 0x7f181af4f3e0>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b67b0>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6b40>",
+                            "A": "<src.operation.Operation object at 0x7f181af4efc0>",
+                            "B": "<src.operation.Operation object at 0x7f181af4f3e0>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6840>",
-                            "B": "<src.operation.Operation object at 0x7f32348b6b40>",
+                            "A": "<src.operation.Operation object at 0x7f181af4f050>",
+                            "B": "<src.operation.Operation object at 0x7f181af4f3e0>",
                             "label": "ch_multiqc_files"
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6b40>",
-                            "B": "<src.process.Process object at 0x7f32348b6b70>",
+                            "A": "<src.operation.Operation object at 0x7f181af4f3e0>",
+                            "B": "<src.process.Process object at 0x7f181af4f350>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6fc0>",
-                            "B": "<src.process.Process object at 0x7f32348b6b70>",
+                            "A": "<src.operation.Operation object at 0x7f181af4f6e0>",
+                            "B": "<src.process.Process object at 0x7f181af4f350>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b6f60>",
-                            "B": "<src.process.Process object at 0x7f32348b6b70>",
+                            "A": "<src.operation.Operation object at 0x7f187416f920>",
+                            "B": "<src.process.Process object at 0x7f181af4f350>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32348b7260>",
-                            "B": "<src.process.Process object at 0x7f32348b6b70>",
+                            "A": "<src.operation.Operation object at 0x7f181af4fa40>",
+                            "B": "<src.process.Process object at 0x7f181af4f350>",
                             "label": ""
                         },
                         {
-                            "A": "<src.operation.Operation object at 0x7f32349b72c0>",
-                            "B": "<src.process.Process object at 0x7f32348b6b70>",
+                            "A": "<src.operation.Operation object at 0x7f181af4fa10>",
+                            "B": "<src.process.Process object at 0x7f181af4f350>",
                             "label": ""
                         }
                     ],
@@ -19058,7 +19058,7 @@
         "PIPELINE_COMPLETION": {
             "nodes": [
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345cac60>",
+                    "id": "<src.operation.Operation object at 0x7f181ad3db50>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "summary_params = paramsSummaryMap(workflow, parameters_schema: 'nextflow_schema.json')",
@@ -19066,7 +19066,7 @@
                     "artificial": false
                 },
                 {
-                    "id": "<src.operation.Operation object at 0x7f32345e2e70>",
+                    "id": "<src.operation.Operation object at 0x7f181ac6f0e0>",
                     "name": "",
                     "shape": "point",
                     "xlabel": "def multiqc_reports = multiqc_report.toList()",
diff --git a/conf/modules_alphafold2.config b/conf/modules_alphafold2.config
index a9eae841..5d3b3f4a 100644
--- a/conf/modules_alphafold2.config
+++ b/conf/modules_alphafold2.config
@@ -97,7 +97,7 @@ process {
         ext.args   = [
             params.use_gpu ? '--use_gpu_relax=true' : '--use_gpu_relax=false',
             params.alphafold2_max_template_date ? "--max_template_date ${params.alphafold2_max_template_date}" : '',
-            params.alphafold2_random_seed ? "--random_seed=${params.alphafold2_random_seed}" : ''
+            params.random_seed != null ? "--random_seed=${params.random_seed}" : ''
         ].join(' ').trim()
         publishDir = [
             [
@@ -156,7 +156,7 @@ process {
         }
         ext.args    = [
             params.use_gpu ? '--use_gpu_relax=true' : '--use_gpu_relax=false',
-            params.alphafold2_random_seed ? "--random_seed=${params.alphafold2_random_seed}" : ''
+            params.random_seed != null ? "--random_seed=${params.random_seed}" : ''
         ].join(' ').trim()
         publishDir = [
             [
diff --git a/conf/modules_boltz.config b/conf/modules_boltz.config
index fb73a412..584fa46c 100644
--- a/conf/modules_boltz.config
+++ b/conf/modules_boltz.config
@@ -69,6 +69,7 @@ process {
         }
         ext.args = [
             params.boltz_model          ? "--model ${params.boltz_model}"             : "",
+            params.random_seed != null  ? "--seed ${params.random_seed}"              : "",
             params.use_msa_server       ? "--use_msa_server"                          : "",
             params.msa_server_url       ? "--msa_server_url ${params.msa_server_url}" : "",
             params.boltz_use_potentials ? "--use_potentials"                          : "",
diff --git a/conf/modules_colabfold.config b/conf/modules_colabfold.config
index ae080ae1..0a7e7c51 100644
--- a/conf/modules_colabfold.config
+++ b/conf/modules_colabfold.config
@@ -40,11 +40,11 @@ process {
         if (params.use_gpu) {
             accelerator = 1
         }
-
         ext.args    = [
             params.colabfold_use_gpu_relax  ? '--use-gpu-relax' : '',
             params.colabfold_use_amber      ? '--amber' : '',
             params.colabfold_use_templates  ? '--templates' : '',
+            params.random_seed != null      ? "--random-seed ${params.random_seed}" : '',
             params.use_msa_server && params.msa_server_url ? "--host-url ${params.msa_server_url}" : ''
         ].join(' ').trim()
         publishDir = [
diff --git a/docs/usage.md b/docs/usage.md
index 4bee11e7..fecc7bfd 100644
--- a/docs/usage.md
+++ b/docs/usage.md
@@ -160,6 +160,18 @@ Alternatively, the required data layout for each of the individual modes is desc
 
 > Omitting the `--db` flag will allow the pipeline to download the reference data required to execute the selected modes.
 
+## Random Seeds
+
+The pipeline-wide `--random_seed` parameter can be used to set the same seed for `alphafold2`, `boltz`, and `colabfold` modes only.
+
+If no seed is explicitly provided, each mode keeps its native default behaviour:
+
+- `alphafold2`: AlphaFold2 generates a random seed internally.
+- `boltz`: Boltz leaves the seed unset (`--seed` is not passed).
+- `colabfold`: ColabFold defaults to `--random-seed 0`.
+
+For reproducible results between runs, it is recommended to set an explicit seed.
+
 ## Foldseek structural similarity search
 
 The pipeline can run an optional Foldseek `easy-search` step on the top-ranked structure for each input/mode combination.
diff --git a/docs/usage/alphafold2.md b/docs/usage/alphafold2.md
index 2f6c744e..ed2155db 100644
--- a/docs/usage/alphafold2.md
+++ b/docs/usage/alphafold2.md
@@ -131,7 +131,6 @@ See the [AlphaFold2](https://github.com/google-deepmind/alphafold) documentation
 | Parameter                        | Default                       | Description                                                                                                                                                                                                                                                                                                                                                                             |
 | -------------------------------- | ----------------------------- | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
 | `--alphafold2_full_dbs`          | `false`                       | bfd is a large environmental sequence database used to identify homologs. small bfd is a redundancy recuced version of the bfd database which can reduce the execution time of homolog search but may reduce the depth of the resulting MSA in some cases. `--alphafold2_full_dbs` ensures that the full version of bfd is used for search.                                             |
-| `--alphafold2_random_seed`       | `null`                        | AlphaFold2 model inference is a stochastic process. Fixing a numerical random seed ensures that results are reproducible between runs                                                                                                                                                                                                                                                   |
 | `--alphafold2_max_template_date` | `2038-01-19`                  | Structural templates from the PDB are used as additional context when making predictions. Molecules with solved structures in the PDB can be trivially predicted by using these structures as inputs. When benchmarking model performance it can be useful to restrict the use of templates to those deposited before a fixed date to ensure solved structures do not bias predictions. |
 | `--alphafold2_params_prefix`     | `alphafold_params_2022-12-06` | Specify the alphafold2 params used for prediction                                                                                                                                                                                                                                                                                                                                       |
 | `--alphafold2_model_preset`      | `monomer_ptm`                 | Specify the alphafold2 monomer preset used for prediction.                                                                                                                                                                                                                                                                                                                              |
diff --git a/nextflow.config b/nextflow.config
index bfd94a5b..861cce56 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -20,6 +20,7 @@ params {
     use_msa_server              = false
     msa_server_url              = null
     uniref30_prefix             = null
+    random_seed                 = null
 
     // Alphafold2 parameters
     alphafold2_mode                 = 'split_msa_prediction' // {standard, split_msa_prediction}
@@ -27,7 +28,6 @@ params {
     alphafold2_full_dbs             = null // true full_dbs, false reduced_dbs
     alphafold2_model_preset         = 'monomer_ptm' // single-entry FASTA only: {monomer, monomer_casp14, monomer_ptm}
     alphafold2_db                   = null
-    alphafold2_random_seed          = null
 
     // Alphafold2 links
     alphafold2_bfd_link             = null
diff --git a/nextflow_schema.json b/nextflow_schema.json
index d68ed138..63c4013a 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -92,6 +92,10 @@
                     "description": "Use the cloud MSA server",
                     "icon": "fas folder-open"
                 },
+                "random_seed": {
+                    "type": "integer",
+                    "description": "Global random seed for modules that natively support explicit seeding: alphafold2, boltz, and colabfold."
+                },
                 "msa_server_url": {
                     "type": "string",
                     "description": "Specify your custom MMSeqs2 API server url",
@@ -134,10 +138,6 @@
                     "enum": ["monomer", "monomer_casp14", "monomer_ptm"],
                     "fa_icon": "fas fa-stream"
                 },
-                "alphafold2_random_seed": {
-                    "type": "integer",
-                    "description": "Random seed to control stochastic alphafold inference."
-                },
                 "alphafold2_params_prefix": {
                     "type": "string",
                     "default": "alphafold_params_2022-12-06",
diff --git a/subworkflows/local/utils_nfcore_proteinfold_pipeline/main.nf b/subworkflows/local/utils_nfcore_proteinfold_pipeline/main.nf
index d9fc272f..380bab4e 100644
--- a/subworkflows/local/utils_nfcore_proteinfold_pipeline/main.nf
+++ b/subworkflows/local/utils_nfcore_proteinfold_pipeline/main.nf
@@ -94,6 +94,8 @@ ${colors.purple}  nf-core/proteinfold ${workflow.manifest.version}${colors.reset
         nextflow_cli_args
     )
 
+    validateInputParameters()
+
     //
     // Create channel from input file provided through input
     //
@@ -189,9 +191,15 @@ workflow PIPELINE_COMPLETION {
 // Check and validate pipeline parameters
 //
 def validateInputParameters() {
-    if (params.mode.toLowerCase().split(",").contains("alphafold3")) {
+    def requestedModes = params.mode.toLowerCase().split(",")*.trim()
+
+    if (requestedModes.contains("alphafold3")) {
         alphafold3Warn(log)
     }
+
+    if (params.random_seed != null) {
+        randomSeedModeWarn(log, requestedModes)
+    }
 }
 
 def modeChannel(ch, mode) {
@@ -310,3 +318,15 @@ def alphafold3Warn(log) {
         "  More information here: \"https://github.com/google-deepmind/alphafold3/blob/main/README.md#alphafold-3-source-code-and-model-parameters.\"\n" +
         "==================================================================================="
 }
+
+def randomSeedModeWarn(log, requestedModes) {
+    def supportedModes = ['alphafold2', 'boltz', 'colabfold'] as Set
+    def unsupportedModes = requestedModes.findAll { !supportedModes.contains(it) }.unique().sort()
+
+    if (!unsupportedModes.isEmpty()) {
+        log.warn "=============================================================================\n" +
+            "  The global --random_seed parameter only applies to alphafold2, boltz, and colabfold.\n" +
+            "  It will be ignored for the following selected mode(s): ${unsupportedModes.join(', ')}.\n" +
+            "==================================================================================="
+    }
+}