diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index e24ef2f6..7611fca7 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -1,24 +1,24 @@
 version: 2
 updates:
-  - package-ecosystem: 'github-actions'
-    directory: '/'
-    target-branch: 'main'
+  - package-ecosystem: github-actions
+    directory: /
+    target-branch: main
     schedule:
-      interval: 'weekly'
-  - package-ecosystem: 'npm'
-    directory: '/'
-    target-branch: 'main'
+      interval: weekly
+  - package-ecosystem: npm
+    directory: /
+    target-branch: main
     schedule:
-      interval: 'weekly'
+      interval: weekly
     ignore:
-      - dependency-name: 'chai'
+      - dependency-name: chai
         update-types:
-          - 'version-update:semver-major'
-      - dependency-name: 'esbuild'
+          - version-update:semver-major
+      - dependency-name: esbuild
         update-types:
-          - 'version-update:semver-minor'
-  - package-ecosystem: 'gitsubmodule'
-    directory: '/'
-    target-branch: 'main'
+          - version-update:semver-minor
+  - package-ecosystem: gitsubmodule
+    directory: /
+    target-branch: main
     schedule:
-      interval: 'daily'
+      interval: daily
diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
index 53280fd8..2900f7a0 100644
--- a/.github/workflows/codeql.yml
+++ b/.github/workflows/codeql.yml
@@ -16,9 +16,9 @@ permissions:
 
 on:
   push:
-    branches: [main]
+    branches: [typescript]
   pull_request:
-    branches: [main]
+    branches: [typescript]
   schedule:
     - cron: 26 6 * * 5
 
diff --git a/.github/workflows/coverage.yml b/.github/workflows/coverage.yml
index 9d344e61..923f9dbb 100644
--- a/.github/workflows/coverage.yml
+++ b/.github/workflows/coverage.yml
@@ -2,7 +2,9 @@ name: Test coverage
 
 on:
   push:
-    branches: [main]
+    branches: [main, typescript]
+  pull_request:
+    branches: [main, typescript]
 
 permissions:
   contents: read
@@ -22,7 +24,7 @@ jobs:
       - name: Download dependencies
         run: npm ci
       - name: Generate coverage report
-        run: ./node_modules/.bin/jest --coverage
+        run: npm run coverage
       - name: Upload coverage to Quality
         uses: qltysh/qlty-action/coverage@v2
         with:
diff --git a/.github/workflows/deploy-pages.yml b/.github/workflows/deploy-pages.yml
index 48253487..ae6cbad8 100644
--- a/.github/workflows/deploy-pages.yml
+++ b/.github/workflows/deploy-pages.yml
@@ -4,11 +4,11 @@ name: Deploy Vite App to GitHub Pages
 on:
   push:
     branches:
-      - main
+      - typescript
 
 # Allow only one concurrent deployment, cancelling any previously running ones.
 concurrency:
-  group: 'pages'
+  group: pages
   cancel-in-progress: true
 
 permissions: {}
@@ -28,9 +28,9 @@ jobs:
       - name: Set up Node.js
         uses: actions/setup-node@v6
         with:
-          node-version: 22
+          node-version: lts/*
           # Cache npm dependencies to speed up future builds
-          cache: 'npm'
+          cache: npm
           cache-dependency-path: |
             package-lock.json
             browser/package-lock.json
diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index 26a801a5..073eacef 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -14,8 +14,8 @@ jobs:
       # Setup .npmrc file to publish to npm
       - uses: actions/setup-node@v6
         with:
-          node-version: 'lts/*'
-          registry-url: 'https://registry.npmjs.org'
+          node-version: lts/*
+          registry-url: https://registry.npmjs.org
       - name: Update npm
         run: npm install -g npm@latest
       - run: npm ci
diff --git a/.github/workflows/test-types.yml b/.github/workflows/test-types.yml
deleted file mode 100644
index df04fb2e..00000000
--- a/.github/workflows/test-types.yml
+++ /dev/null
@@ -1,66 +0,0 @@
-name: Test TypeScript Definitions
-
-on:
-  push:
-    branches: [main]
-  pull_request:
-    branches: [main]
-
-jobs:
-  test-types:
-    runs-on: ubuntu-latest
-
-    strategy:
-      matrix:
-        node-version: [22.x, lts/*]
-
-    steps:
-      - uses: actions/checkout@v6
-
-      - name: Use Node.js ${{ matrix.node-version }}
-        uses: actions/setup-node@v6
-        with:
-          node-version: ${{ matrix.node-version }}
-          cache: 'npm'
-
-      - name: Install dependencies
-        run: npm ci
-
-      - name: Build the package
-        run: npm run build
-
-      - name: Pack the package
-        run: npm pack
-
-      - name: Create test directory
-        run: mkdir -p test-package
-
-      - name: Install packed package
-        run: |
-          cd test-package
-          npm init -y
-          npm install ../hed-validator-*.tgz
-          npm install typescript @types/node tsx
-
-      - name: Copy test files and tsconfig
-        run: |
-          cp types/test.ts test-package/
-          cp types/tsconfig.json test-package/
-          cp tsconfig.json test-package/tsconfig.base.json
-          cp scripts/runtime-test.template.ts test-package/runtime-test.ts
-
-      - name: Update tsconfig paths
-        run: |
-          cd test-package
-          sed -i 's|"../tsconfig.json"|"./tsconfig.base.json"|' tsconfig.json
-          sed -i 's|"baseUrl": ".."|"baseUrl": "."|' tsconfig.json
-
-      - name: Test TypeScript definitions
-        run: |
-          cd test-package
-          npx tsc --project tsconfig.json
-
-      - name: Test runtime execution (basic smoke test)
-        run: |
-          cd test-package
-          npx tsx runtime-test.ts
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index 4e8e793c..ac74ae7c 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -2,20 +2,20 @@ name: Tests
 
 on:
   push:
-    branches: [main]
+    branches: [main, typescript]
   pull_request:
-    branches: [main]
+    branches: [main, typescript]
 
 permissions:
   contents: read
 
 jobs:
-  Build:
+  Main:
     runs-on: ubuntu-latest
 
     strategy:
       matrix:
-        node-version: [22.x, lts/*, 'node']
+        node-version: [22.x, lts/*, node]
 
     steps:
       - name: Check out the code
@@ -33,12 +33,12 @@ jobs:
       - name: Test with Node.js ${{ matrix.node-version }}
         run: npm test
 
-  JSON-spec-tests:
+  JSON:
     runs-on: ubuntu-latest
 
     strategy:
       matrix:
-        node-version: [22.x, lts/*, 'node']
+        node-version: [22.x, lts/*, node]
 
     steps:
       - name: Check out the code
@@ -56,12 +56,12 @@ jobs:
       - name: Run JSON spec tests with Node.js ${{ matrix.node-version }}
         run: npm run testSpecs
 
-  Browser-tests:
+  Browser:
     runs-on: ubuntu-latest
 
     strategy:
       matrix:
-        node-version: [22.x, lts/*, 'node']
+        node-version: [22.x, lts/*, node]
 
     steps:
       - name: Check out the code
diff --git a/babel.config.js b/babel.config.js
index 67dc225e..49218f78 100644
--- a/babel.config.js
+++ b/babel.config.js
@@ -1,12 +1,14 @@
-module.exports = {
+export default {
   presets: [
-    ['@babel/preset-env', {
-      targets: {
-        node: '22'
+    [
+      '@babel/preset-env',
+      {
+        targets: {
+          node: '22',
+        },
       },
-      modules: 'commonjs'
-    }]
+    ],
+    '@babel/preset-typescript',
   ],
-  plugins: []
+  plugins: [],
 }
-
diff --git a/browser/src/bids/BidsWebAccessor.js b/browser/src/bids/BidsWebAccessor.js
index c22c8f7c..9090f17c 100644
--- a/browser/src/bids/BidsWebAccessor.js
+++ b/browser/src/bids/BidsWebAccessor.js
@@ -1,6 +1,6 @@
-import { BidsFileAccessor } from '../../../src/bids/datasetParser.js'
-import { buildSchemasFromVersion } from '../schema/init.js'
-import { BidsHedIssue } from '../../../src/bids/types/issues.js'
+import { BidsFileAccessor } from '../../../src/bids/datasetParser'
+import { buildSchemasFromVersion } from '../schema/init'
+import { BidsHedIssue } from '../../../src/bids/types/issues'
 
 /**
  * Build HED schemas from a dataset description for the browser environment.
@@ -90,8 +90,7 @@ export class BidsWebAccessor extends BidsFileAccessor {
    * @private
    */
   constructor(datasetRootDirectory, fileMap) {
-    super(datasetRootDirectory, fileMap)
-    this.schemaBuilder = buildBidsSchemas
+    super(datasetRootDirectory, fileMap, buildBidsSchemas)
   }
 
   async getFileContent(relativePath) {
diff --git a/browser/src/bids/BidsWebAccessor.spec.js b/browser/src/bids/BidsWebAccessor.spec.js
index 90af75e4..b7095aa5 100644
--- a/browser/src/bids/BidsWebAccessor.spec.js
+++ b/browser/src/bids/BidsWebAccessor.spec.js
@@ -1,5 +1,5 @@
 import { describe, it, expect } from 'vitest'
-import { BidsWebAccessor } from './BidsWebAccessor.js'
+import { BidsWebAccessor } from './BidsWebAccessor'
 
 // Mock File object for BidsWebAccessor tests
 const MockFile = class {
diff --git a/browser/src/schema/init.js b/browser/src/schema/init.js
index 92f7d66e..ec6ec277 100644
--- a/browser/src/schema/init.js
+++ b/browser/src/schema/init.js
@@ -7,11 +7,9 @@
 import zip from 'lodash/zip'
 
 import { loadSchema } from './loader'
-import { setParent } from '../../../src/utils/xml.js'
-
 import SchemaParser from '../../../src/schema/parser'
 import PartneredSchemaMerger from '../../../src/schema/schemaMerger'
-import { Schema, Schemas } from '../../../src/schema/containers'
+import { Schema, HedSchemas } from '../../../src/schema/containers'
 import { IssueError } from '../../../src/issues/issues'
 import { splitStringTrimAndRemoveBlanks } from '../../../src/utils/string'
 import { SchemasSpec } from '../../../src/schema/specs'
@@ -20,12 +18,10 @@ import { SchemasSpec } from '../../../src/schema/specs'
  * Build a single schema container object from an XML file.
  *
  * @param {Object} xmlData The schema's XML data
- * @returns {Schema} The HED schema object.
+ * @returns {HedSchema} The HED schema object.
  */
 const buildSchemaObject = function (xmlData) {
-  const rootElement = xmlData.HED
-  setParent(rootElement, null)
-  const schemaEntries = new SchemaParser(rootElement).parse()
+  const schemaEntries = new SchemaParser(xmlData.HED).parse()
   return new Schema(xmlData, schemaEntries)
 }
 
@@ -33,7 +29,7 @@ const buildSchemaObject = function (xmlData) {
  * Build a single merged schema container object from one or more XML files.
  *
  * @param {Object[]} xmlData The schemas' XML data.
- * @returns {Schema} The HED schema object.
+ * @returns {HedSchema} The HED schema object.
  */
 const buildSchemaObjects = function (xmlData) {
   const schemas = xmlData.map((data) => buildSchemaObject(data))
@@ -48,7 +44,7 @@ const buildSchemaObjects = function (xmlData) {
  * Build a schema collection object from a schema specification.
  *
  * @param {SchemasSpec} schemaSpecs The description of which schemas to use.
- * @returns {Promise<Schemas>} The schema container object and any issues found.
+ * @returns {Promise<HedSchemas>} The schema container object and any issues found.
  */
 export async function buildSchemas(schemaSpecs) {
   const schemaPrefixes = Array.from(schemaSpecs.data.keys())
@@ -62,14 +58,14 @@ export async function buildSchemas(schemaSpecs) {
   )
   const schemaObjects = schemaXmlData.map(buildSchemaObjects)
   const schemas = new Map(zip(schemaPrefixes, schemaObjects))
-  return new Schemas(schemas)
+  return new HedSchemas(schemas)
 }
 
 /**
  * Build HED schemas from a version specification string.
  *
  * @param {string} hedVersionString The HED version specification string (can contain comma-separated versions).
- * @returns {Promise<Schemas>} A Promise that resolves to the built schemas.
+ * @returns {Promise<HedSchemas>} A Promise that resolves to the built schemas.
  * @throws {IssueError} If the schema specification is invalid or schemas cannot be built.
  */
 export async function buildSchemasFromVersion(hedVersionString) {
diff --git a/browser/src/schema/loader.js b/browser/src/schema/loader.js
index 0216d270..8d07adfc 100644
--- a/browser/src/schema/loader.js
+++ b/browser/src/schema/loader.js
@@ -2,8 +2,8 @@
 
 /* Imports */
 import { IssueError } from '../../../src/issues/issues'
-import { parseSchemaXML } from '../../../src/utils/xml.js'
-import { schemaData } from './vite-importer.js'
+import parseSchemaXML from '../../../src/utils/xml.js'
+import { schemaData } from './vite-importer'
 
 /**
  * Load schema XML data from a schema version or path description.
diff --git a/browser/src/schema/loader.spec.js b/browser/src/schema/loader.spec.js
index 7eaabc02..899b826b 100644
--- a/browser/src/schema/loader.spec.js
+++ b/browser/src/schema/loader.spec.js
@@ -1,6 +1,6 @@
 import { describe, it, expect } from 'vitest'
-import { loadSchema } from './loader.js'
-import { SchemaSpec } from '../../../src/schema/specs.js'
+import { loadSchema } from './loader'
+import { SchemaSpec } from '../../../src/schema/specs.ts'
 
 describe('Browser Schema Loader', () => {
   it('should return undefined when loading a bundled schema in test environment', async () => {
diff --git a/browser/src/utils/files.js b/browser/src/utils/files.js
index 11555e93..7e81b667 100644
--- a/browser/src/utils/files.js
+++ b/browser/src/utils/files.js
@@ -8,9 +8,9 @@ import { IssueError } from '../../../src/issues/issues'
  * @throws {IssueError} Always throws since local file reading is not supported in browsers.
  */
 export async function readFile(fileName) {
-  IssueError.generateAndThrow('fileReadError', { 
-    fileName: fileName, 
-    message: 'Local file reading is not supported in browser environment' 
+  IssueError.generateAndThrow('fileReadError', {
+    fileName: fileName,
+    message: 'Local file reading is not supported in browser environment',
   })
 }
 
@@ -26,7 +26,7 @@ export async function readHTTPSFile(url) {
   if (!response.ok) {
     IssueError.generateAndThrow('networkReadError', {
       url: url,
-      statusCode: response.status,
+      statusCode: response.status.toString(),
       statusText: response.statusText,
     })
   }
diff --git a/browser/src/validate_dataset.jsx b/browser/src/validate_dataset.jsx
index 41f7052d..012e3b01 100644
--- a/browser/src/validate_dataset.jsx
+++ b/browser/src/validate_dataset.jsx
@@ -3,9 +3,9 @@ import { createRoot } from 'react-dom/client'
 import { FolderInput } from './components/FolderInput'
 import { ErrorDisplay } from './components/ErrorDisplay'
 import { BidsWebAccessor } from './bids/BidsWebAccessor.js'
-import { BidsDataset } from '@hed-javascript-root/src/bids/types/dataset.js'
-import { IssueError } from '@hed-javascript-root/src/issues/issues.js'
-import { BidsHedIssue } from '@hed-javascript-root/src/bids/types/issues.js'
+import { BidsDataset } from '@hed-javascript-root/src/bids/types/dataset'
+import { IssueError } from '@hed-javascript-root/src/issues/issues'
+import { BidsHedIssue } from '@hed-javascript-root/src/bids/types/issues'
 
 // --- Add TailwindCSS to the document head for immediate styling ---
 ;(() => {
diff --git a/browser/src/validate_file.jsx b/browser/src/validate_file.jsx
index c0f630b5..fe544ee9 100644
--- a/browser/src/validate_file.jsx
+++ b/browser/src/validate_file.jsx
@@ -10,8 +10,8 @@ import {
   buildBidsSchemas,
 } from '@hed-javascript-root/src/bids/index.js'
 import { buildSchemasFromVersion } from './schema/init.js'
-import { generateIssue, IssueError } from '@hed-javascript-root/src/issues/issues.js'
-import parseTSV from '@hed-javascript-root/src/bids/tsvParser.js'
+import { generateIssue, IssueError } from '@hed-javascript-root/src/issues/issues'
+import parseTSV from '@hed-javascript-root/src/bids/tsvParser'
 
 // --- Main Application Component ---
 
diff --git a/index.js b/index.js
index 2052ab87..869c5d7e 100644
--- a/index.js
+++ b/index.js
@@ -8,9 +8,9 @@ export {
   BidsJsonFile,
   BidsSidecar,
   BidsHedIssue,
-  buildBidsSchemas,
   BidsFileAccessor,
   BidsDirectoryAccessor,
+  buildBidsSchemas,
 } from './src/bids'
 
 export { IssueError, Issue } from './src/issues/issues'
diff --git a/jest.config.js b/jest.config.js
index d5fa2985..cb0192cb 100644
--- a/jest.config.js
+++ b/jest.config.js
@@ -1,19 +1,16 @@
-module.exports = {
+export default {
   testEnvironment: 'node',
   transform: {
-    '\\.xml$': '<rootDir>/xml-transformer.js',
+    '\\.xml$': '<rootDir>/xml-transformer.cjs',
     '^.+\\.(js|jsx)$': 'babel-jest',
+    '^.+\\.(ts|tsx)$': 'babel-jest',
   },
   transformIgnorePatterns: ['/node_modules/(?!unicode-name|semver)'],
-  testPathIgnorePatterns: ['node_modules/', '<rootDir>/types/test.ts', '<rootDir>/browser/'],
+  testPathIgnorePatterns: ['node_modules/', '<rootDir>/browser/'],
   moduleNameMapper: {
     '\\.(css|less|scss|sass)$': 'identity-obj-proxy',
   },
-  collectCoverageFrom: [
-    'src/**/*.js',
-    '!src/**/*.spec.js',
-    '!src/**/*.test.js',
-  ],
+  collectCoverageFrom: ['src/**/*.(js|ts)', '!src/**/*.spec.js', '!src/**/*.test.js'],
   coveragePathIgnorePatterns: [
     '/node_modules/',
     '/tests/',
diff --git a/package-lock.json b/package-lock.json
index 62217930..4499f9f8 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -13,17 +13,21 @@
         "fast-xml-parser": "^5.2.5",
         "lodash": "^4.17.21",
         "pluralize": "^8.0.0",
-        "semver": "^7.6.0",
+        "semver": "^7.7.2",
         "unicode-name": "^1.0.2"
       },
       "devDependencies": {
         "@babel/core": "^7.28.0",
         "@babel/preset-env": "^7.28.0",
+        "@babel/preset-typescript": "^7.27.1",
         "@eslint/eslintrc": "^3.2.0",
         "@eslint/js": "^9.18.0",
         "@jest/globals": "^30.0.0",
+        "@types/lodash": "^4.17.20",
         "@types/node": "^25.0.2",
-        "babel-jest": "^30.0.5",
+        "@types/pluralize": "^0.0.33",
+        "@types/semver": "^7.7.0",
+        "babel-jest": "^30.2.0",
         "chai": "^4.3.6",
         "esbuild": "^0.25.0",
         "esbuild-plugins-node-modules-polyfill": "^1.7.1",
@@ -39,6 +43,7 @@
         "prettier": "^3.2.5",
         "pretty-quick": "^4.0.0",
         "ts-jest": "^29.4.0",
+        "ts-node": "^10.9.2",
         "tsx": "^4.20.3",
         "typedoc": "^0.28.0",
         "typescript": "^5.4.5"
@@ -49,8 +54,6 @@
     },
     "node_modules/@babel/code-frame": {
       "version": "7.27.1",
-      "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.27.1.tgz",
-      "integrity": "sha512-cjQ7ZlQ0Mv3b47hABuTevyTuYN4i+loJKGeV9flcCgIK37cCXRh+L1bd3iBHlynerhQ7BhCkn2BPbQUL+rGqFg==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
@@ -63,9 +66,7 @@
       }
     },
     "node_modules/@babel/compat-data": {
-      "version": "7.28.5",
-      "resolved": "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.28.5.tgz",
-      "integrity": "sha512-6uFXyCayocRbqhZOB+6XcuZbkMNimwfVGFji8CTZnCzOHVGvDqzvitu1re2AU5LROliz7eQPhB8CpAMvnx9EjA==",
+      "version": "7.28.0",
       "dev": true,
       "license": "MIT",
       "engines": {
@@ -73,21 +74,19 @@
       }
     },
     "node_modules/@babel/core": {
-      "version": "7.28.5",
-      "resolved": "https://registry.npmjs.org/@babel/core/-/core-7.28.5.tgz",
-      "integrity": "sha512-e7jT4DxYvIDLk1ZHmU/m/mB19rex9sv0c2ftBtjSBv+kVM/902eh0fINUzD7UwLLNR+jU585GxUJ8/EBfAM5fw==",
+      "version": "7.28.4",
       "dev": true,
       "license": "MIT",
       "dependencies": {
         "@babel/code-frame": "^7.27.1",
-        "@babel/generator": "^7.28.5",
+        "@babel/generator": "^7.28.3",
         "@babel/helper-compilation-targets": "^7.27.2",
         "@babel/helper-module-transforms": "^7.28.3",
         "@babel/helpers": "^7.28.4",
-        "@babel/parser": "^7.28.5",
+        "@babel/parser": "^7.28.4",
         "@babel/template": "^7.27.2",
-        "@babel/traverse": "^7.28.5",
-        "@babel/types": "^7.28.5",
+        "@babel/traverse": "^7.28.4",
+        "@babel/types": "^7.28.4",
         "@jridgewell/remapping": "^2.3.5",
         "convert-source-map": "^2.0.0",
         "debug": "^4.1.0",
@@ -105,8 +104,6 @@
     },
     "node_modules/@babel/core/node_modules/semver": {
       "version": "6.3.1",
-      "resolved": "https://registry.npmjs.org/semver/-/semver-6.3.1.tgz",
-      "integrity": "sha512-BR7VvDCVHO+q2xBEWskxS6DJE1qRnb7DxzUrogb71CWoSficBxYsiAGd+Kl0mmq/MprG9yArRkyrQxTO6XjMzA==",
       "dev": true,
       "license": "ISC",
       "bin": {
@@ -114,14 +111,12 @@
       }
     },
     "node_modules/@babel/generator": {
-      "version": "7.28.5",
-      "resolved": "https://registry.npmjs.org/@babel/generator/-/generator-7.28.5.tgz",
-      "integrity": "sha512-3EwLFhZ38J4VyIP6WNtt2kUdW9dokXA9Cr4IVIFHuCpZ3H8/YFOl5JjZHisrn1fATPBmKKqXzDFvh9fUwHz6CQ==",
+      "version": "7.28.3",
       "dev": true,
       "license": "MIT",
       "dependencies": {
-        "@babel/parser": "^7.28.5",
-        "@babel/types": "^7.28.5",
+        "@babel/parser": "^7.28.3",
+        "@babel/types": "^7.28.2",
         "@jridgewell/gen-mapping": "^0.3.12",
         "@jridgewell/trace-mapping": "^0.3.28",
         "jsesc": "^3.0.2"
@@ -132,8 +127,6 @@
     },
     "node_modules/@babel/helper-annotate-as-pure": {
       "version": "7.27.3",
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-      "resolved": "https://registry.npmjs.org/unicode-property-aliases-ecmascript/-/unicode-property-aliases-ecmascript-2.1.0.tgz",
-      "integrity": "sha512-6t3foTQI9qne+OZoVQB/8x8rk2k1eVy1gRXhV3oFQ5T6R1dqQ1xtin3XqSlx3+ATBkliTaR/hHyJBm+LVPNM8w==",
       "dev": true,
       "license": "MIT",
       "engines": {
@@ -8299,8 +6250,6 @@
     },
     "node_modules/unrs-resolver": {
       "version": "1.11.1",
-      "resolved": "https://registry.npmjs.org/unrs-resolver/-/unrs-resolver-1.11.1.tgz",
-      "integrity": "sha512-bSjt9pjaEBnNiGgc9rUiHGKv5l4/TGzDmYw3RhnkJGtLhbnnA/5qJj7x3dNDCRx/PJxu774LlH8lCOlB4hEfKg==",
       "dev": true,
       "hasInstallScript": true,
       "license": "MIT",
@@ -8334,8 +6283,6 @@
     },
     "node_modules/update-browserslist-db": {
       "version": "1.1.3",
-      "resolved": "https://registry.npmjs.org/update-browserslist-db/-/update-browserslist-db-1.1.3.tgz",
-      "integrity": "sha512-UxhIZQ+QInVdunkDAaiazvvT/+fXL5Osr0JZlJulepYu6Jd7qJtDZjlur0emRlT71EN3ScPoE7gvsuIKKNavKw==",
       "dev": true,
       "funding": [
         {
@@ -8365,18 +6312,19 @@
     },
     "node_modules/uri-js": {
       "version": "4.4.1",
-      "resolved": "https://registry.npmjs.org/uri-js/-/uri-js-4.4.1.tgz",
-      "integrity": "sha512-7rKUyy33Q1yc98pQ1DAmLtwX109F7TIfWlW1Ydo8Wl1ii1SeHieeh0HHfPeL2fMXK6z0s8ecKs9frCuLJvndBg==",
       "dev": true,
       "license": "BSD-2-Clause",
       "dependencies": {
         "punycode": "^2.1.0"
       }
     },
+    "node_modules/v8-compile-cache-lib": {
+      "version": "3.0.1",
+      "dev": true,
+      "license": "MIT"
+    },
     "node_modules/v8-to-istanbul": {
       "version": "9.3.0",
-      "resolved": "https://registry.npmjs.org/v8-to-istanbul/-/v8-to-istanbul-9.3.0.tgz",
-      "integrity": "sha512-kiGUalWN+rgBJ/1OHZsBtU4rXZOfj/7rKQxULKlIzwzQSvMJUUNgPwJEEh7gU6xEVxC0ahoOBvN2YI8GH6FNgA==",
       "dev": true,
       "license": "ISC",
       "dependencies": {
@@ -8390,8 +6338,6 @@
     },
     "node_modules/walker": {
       "version": "1.0.8",
-      "resolved": "https://registry.npmjs.org/walker/-/walker-1.0.8.tgz",
-      "integrity": "sha512-ts/8E8l5b7kY0vlWLewOkDXMmPdLcVV4GmOQLyxuSswIJsweeFZtAsMF7k1Nszz+TYBQrlYRmzOnr398y1JemQ==",
       "dev": true,
       "license": "Apache-2.0",
       "dependencies": {
@@ -8400,8 +6346,6 @@
     },
     "node_modules/which": {
       "version": "2.0.2",
-      "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz",
-      "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==",
       "dev": true,
       "license": "ISC",
       "dependencies": {
@@ -8416,8 +6360,6 @@
     },
     "node_modules/word-wrap": {
       "version": "1.2.5",
-      "resolved": "https://registry.npmjs.org/word-wrap/-/word-wrap-1.2.5.tgz",
-      "integrity": "sha512-BN22B5eaMMI9UMtjrGd5g5eCYPpCPDUy0FJXbYsaT5zYxjFOckS53SQDE3pWkVoWpHXVb3BrYcEN4Twa55B5cA==",
       "dev": true,
       "license": "MIT",
       "engines": {
@@ -8426,15 +6368,11 @@
     },
     "node_modules/wordwrap": {
       "version": "1.0.0",
-      "resolved": "https://registry.npmjs.org/wordwrap/-/wordwrap-1.0.0.tgz",
-      "integrity": "sha512-gvVzJFlPycKc5dZN4yPkP8w7Dc37BtP1yczEneOb4uq34pXZcvrtRTmWV8W+Ume+XCxKgbjM+nevkyFPMybd4Q==",
       "dev": true,
       "license": "MIT"
     },
     "node_modules/wrap-ansi": {
       "version": "8.1.0",
-      "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-8.1.0.tgz",
-      "integrity": "sha512-si7QWI6zUMq56bESFvagtmzMdGOtoxfR+Sez11Mobfc7tm+VkUckk9bW2UeffTGVUbOksxmSw0AA2gs8g71NCQ==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
@@ -8452,8 +6390,6 @@
     "node_modules/wrap-ansi-cjs": {
       "name": "wrap-ansi",
       "version": "7.0.0",
-      "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-7.0.0.tgz",
-      "integrity": "sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
@@ -8470,8 +6406,6 @@
     },
     "node_modules/wrap-ansi-cjs/node_modules/ansi-regex": {
       "version": "5.0.1",
-      "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
-      "integrity": "sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ==",
       "dev": true,
       "license": "MIT",
       "engines": {
@@ -8480,15 +6414,11 @@
     },
     "node_modules/wrap-ansi-cjs/node_modules/emoji-regex": {
       "version": "8.0.0",
-      "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz",
-      "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==",
       "dev": true,
       "license": "MIT"
     },
     "node_modules/wrap-ansi-cjs/node_modules/string-width": {
       "version": "4.2.3",
-      "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz",
-      "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
@@ -8502,8 +6432,6 @@
     },
     "node_modules/wrap-ansi-cjs/node_modules/strip-ansi": {
       "version": "6.0.1",
-      "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz",
-      "integrity": "sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
@@ -8515,8 +6443,6 @@
     },
     "node_modules/wrap-ansi/node_modules/ansi-styles": {
       "version": "6.2.1",
-      "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-6.2.1.tgz",
-      "integrity": "sha512-bN798gFfQX+viw3R7yrGWRqnrN2oRkEkUjjl4JNn4E8GxxbjtG3FbrEIIY3l8/hrwUwIeCZvi4QuOTP4MErVug==",
       "dev": true,
       "license": "MIT",
       "engines": {
@@ -8528,8 +6454,6 @@
     },
     "node_modules/write-file-atomic": {
       "version": "5.0.1",
-      "resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-5.0.1.tgz",
-      "integrity": "sha512-+QU2zd6OTD8XWIJCbffaiQeH9U73qIqafo1x6V1snCWYGJf6cVE0cDR4D8xRzcEnfI21IFrUPzPGtcPf8AC+Rw==",
       "dev": true,
       "license": "ISC",
       "dependencies": {
@@ -8542,8 +6466,6 @@
     },
     "node_modules/y18n": {
       "version": "5.0.8",
-      "resolved": "https://registry.npmjs.org/y18n/-/y18n-5.0.8.tgz",
-      "integrity": "sha512-0pfFzegeDWJHJIAmTLRP2DwHjdF5s7jo9tuztdQxAhINCdvS+3nGINqPd00AphqJR/0LhANUS6/+7SCb98YOfA==",
       "dev": true,
       "license": "ISC",
       "engines": {
@@ -8552,15 +6474,11 @@
     },
     "node_modules/yallist": {
       "version": "3.1.1",
-      "resolved": "https://registry.npmjs.org/yallist/-/yallist-3.1.1.tgz",
-      "integrity": "sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g==",
       "dev": true,
       "license": "ISC"
     },
     "node_modules/yaml": {
       "version": "2.8.1",
-      "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.8.1.tgz",
-      "integrity": "sha512-lcYcMxX2PO9XMGvAJkJ3OsNMw+/7FKes7/hgerGUYWIoWu5j/+YQqcZr5JnPZWzOsEBgMbSbiSTn/dv/69Mkpw==",
       "dev": true,
       "license": "ISC",
       "bin": {
@@ -8572,8 +6490,6 @@
     },
     "node_modules/yargs": {
       "version": "17.7.2",
-      "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.7.2.tgz",
-      "integrity": "sha512-7dSzzRQ++CKnNI/krKnYRV7JKKPUXMEh61soaHKg9mrWEhzFWhFnxPxGl+69cD1Ou63C13NUPCnmIcrvqCuM6w==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
@@ -8591,8 +6507,6 @@
     },
     "node_modules/yargs-parser": {
       "version": "21.1.1",
-      "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-21.1.1.tgz",
-      "integrity": "sha512-tVpsJW7DdjecAiFpbIB1e3qxIQsE6NoPc5/eTdrbbIC4h0LVsWhnoa3g+m2HclBIujHzsxZ4VJVA+GUuc2/LBw==",
       "dev": true,
       "license": "ISC",
       "engines": {
@@ -8601,8 +6515,6 @@
     },
     "node_modules/yargs/node_modules/ansi-regex": {
       "version": "5.0.1",
-      "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-5.0.1.tgz",
-      "integrity": "sha512-quJQXlTSUGL2LH9SUXo8VwsY4soanhgo6LNSm84E1LBcE8s3O0wpdiRzyR9z/ZZJMlMWv37qOOb9pdJlMUEKFQ==",
       "dev": true,
       "license": "MIT",
       "engines": {
@@ -8611,15 +6523,11 @@
     },
     "node_modules/yargs/node_modules/emoji-regex": {
       "version": "8.0.0",
-      "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz",
-      "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==",
       "dev": true,
       "license": "MIT"
     },
     "node_modules/yargs/node_modules/string-width": {
       "version": "4.2.3",
-      "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz",
-      "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
@@ -8633,8 +6541,6 @@
     },
     "node_modules/yargs/node_modules/strip-ansi": {
       "version": "6.0.1",
-      "resolved": "https://registry.npmjs.org/strip-ansi/-/strip-ansi-6.0.1.tgz",
-      "integrity": "sha512-Y38VPSHcqkFrCpFnQ9vuSXmquuv5oXOKpGeT6aGrr3o3Gc9AlVa6JBfUSOCnbxGGZF+/0ooI7KrPuUSztUdU5A==",
       "dev": true,
       "license": "MIT",
       "dependencies": {
@@ -8644,10 +6550,16 @@
         "node": ">=8"
       }
     },
+    "node_modules/yn": {
+      "version": "3.1.1",
+      "dev": true,
+      "license": "MIT",
+      "engines": {
+        "node": ">=6"
+      }
+    },
     "node_modules/yocto-queue": {
       "version": "0.1.0",
-      "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz",
-      "integrity": "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==",
       "dev": true,
       "license": "MIT",
       "engines": {
diff --git a/package.json b/package.json
index 596dd954..78d00282 100644
--- a/package.json
+++ b/package.json
@@ -2,11 +2,10 @@
   "name": "hed-validator",
   "version": "4.1.4",
   "description": "A JavaScript validator for HED (Hierarchical Event Descriptor) strings.",
+  "type": "module",
   "main": "./dist/commonjs/index.js",
-  "types": "./types/index.d.ts",
   "exports": {
     ".": {
-      "types": "./types/index.d.ts",
       "import": "./dist/esm/index.js",
       "require": "./dist/commonjs/index.js"
     }
@@ -24,10 +23,6 @@
     "lint": "eslint ./src/**/*.js",
     "test": "jest --testPathPatterns='/tests/'",
     "testSpecs": "jest --testPathPatterns='/spec_tests/' --silent --noStackTrace",
-    "test-types": "npx tsx types/test.ts",
-    "test-types-local": "node scripts/test-types-local.js",
-    "test-types-local-windows": "powershell -ExecutionPolicy Bypass -File ./scripts/test-types-local-windows.ps1",
-    "test-types-local-unix": "sh ./scripts/test-types-local-unix.sh",
     "type-check": "tsc --noEmit",
     "coverage": "jest --coverage",
     "prepare": "husky",
@@ -48,17 +43,21 @@
     "fast-xml-parser": "^5.2.5",
     "lodash": "^4.17.21",
     "pluralize": "^8.0.0",
-    "semver": "^7.6.0",
+    "semver": "^7.7.2",
     "unicode-name": "^1.0.2"
   },
   "devDependencies": {
     "@babel/core": "^7.28.0",
     "@babel/preset-env": "^7.28.0",
+    "@babel/preset-typescript": "^7.27.1",
     "@eslint/eslintrc": "^3.2.0",
     "@eslint/js": "^9.18.0",
     "@jest/globals": "^30.0.0",
+    "@types/lodash": "^4.17.20",
     "@types/node": "^25.0.2",
-    "babel-jest": "^30.0.5",
+    "@types/pluralize": "^0.0.33",
+    "@types/semver": "^7.7.0",
+    "babel-jest": "^30.2.0",
     "chai": "^4.3.6",
     "esbuild": "^0.25.0",
     "esbuild-plugins-node-modules-polyfill": "^1.7.1",
@@ -74,6 +73,7 @@
     "prettier": "^3.2.5",
     "pretty-quick": "^4.0.0",
     "ts-jest": "^29.4.0",
+    "ts-node": "^10.9.2",
     "tsx": "^4.20.3",
     "typedoc": "^0.28.0",
     "typescript": "^5.4.5"
@@ -86,7 +86,6 @@
   },
   "files": [
     "dist/*",
-    "types/*",
     "esbuild.mjs"
   ]
 }
diff --git a/scripts/runtime-test.template.ts b/scripts/runtime-test.template.ts
deleted file mode 100644
index 95408a47..00000000
--- a/scripts/runtime-test.template.ts
+++ /dev/null
@@ -1,9 +0,0 @@
-import { getLocalSchemaVersions } from 'hed-validator'
-
-const versions = getLocalSchemaVersions()
-console.log('✅ Available schema versions:', versions.length)
-console.log('✅ First version:', versions[0])
-
-// Type check
-const firstVersion: string = versions[0]
-console.log('✅ Type test passed')
diff --git a/scripts/test-types-local-unix.sh b/scripts/test-types-local-unix.sh
deleted file mode 100644
index 11cad91c..00000000
--- a/scripts/test-types-local-unix.sh
+++ /dev/null
@@ -1,60 +0,0 @@
-#!/bin/sh
-
-# Local TypeScript definition testing script
-echo "Building package..."
-npm run build
-
-echo "Packing package..."
-npm pack
-
-echo "Setting up test environment..."
-mkdir -p test-types-local
-cd test-types-local
-
-echo "Installing packed package..."
-npm init -y
-npm install ../hed-validator-*.tgz
-npm install typescript @types/node tsx
-
-echo "Copying test files and tsconfig..."
-cp ../types/test.ts ./
-cp ../types/tsconfig.json ./
-cp ../tsconfig.json ./tsconfig.base.json
-cp ../scripts/runtime-test.template.ts ./runtime-test.ts
-
-echo "Updating tsconfig paths..."
-sed -i 's|"../tsconfig.json"|"./tsconfig.base.json"|' tsconfig.json
-sed -i 's|"baseUrl": ".."|"baseUrl": "."|' tsconfig.json
-
-echo "Testing TypeScript compilation..."
-npx tsc --project tsconfig.json
-
-if [ $? -eq 0 ]; then
-    echo "✅ TypeScript compilation passed!"
-else
-    echo "❌ TypeScript compilation failed!"
-    cd ..
-    rm -rf test-types-local
-    rm hed-validator-*.tgz
-    exit 1
-fi
-
-echo "Running runtime test..."
-npx tsx runtime-test.ts
-
-if [ $? -eq 0 ]; then
-    echo "✅ Runtime test passed!"
-else
-    echo "❌ Runtime test failed!"
-    cd ..
-    rm -rf test-types-local
-    rm hed-validator-*.tgz
-    exit 1
-fi
-
-echo "Cleaning up..."
-cd ..
-rm -rf test-types-local
-rm hed-validator-*.tgz
-
-echo "✅ All TypeScript definition tests passed!"
diff --git a/scripts/test-types-local-windows.ps1 b/scripts/test-types-local-windows.ps1
deleted file mode 100644
index 3e7ca542..00000000
--- a/scripts/test-types-local-windows.ps1
+++ /dev/null
@@ -1,78 +0,0 @@
-# Local TypeScript definition testing script for Windows
-Write-Host "Building package..." -ForegroundColor Green
-npm run build
-
-if ($LASTEXITCODE -ne 0) {
-    Write-Host "Build failed!" -ForegroundColor Red
-    exit 1
-}
-
-Write-Host "Packing package..." -ForegroundColor Green
-npm pack
-
-if ($LASTEXITCODE -ne 0) {
-    Write-Host "Pack failed!" -ForegroundColor Red
-    exit 1
-}
-
-Write-Host "Setting up test environment..." -ForegroundColor Green
-New-Item -ItemType Directory -Force -Path "test-types-local" | Out-Null
-Set-Location "test-types-local"
-
-Write-Host "Installing packed package..." -ForegroundColor Green
-npm init -y | Out-Null
-$tarball = Get-ChildItem -Path ".." -Filter "hed-validator-*.tgz" | Select-Object -First 1
-if ($tarball) {
-    npm install "../$($tarball.Name)" typescript "@types/node" tsx | Out-Null
-} else {
-    Write-Host "No tarball found!" -ForegroundColor Red
-    Set-Location ".."
-    exit 1
-}
-
-Write-Host "Copying test file..." -ForegroundColor Green
-Copy-Item "../types/test.ts" "./test.ts"
-Copy-Item "../types/tsconfig.json" "./tsconfig.json"
-Copy-Item "../tsconfig.json" "./tsconfig.base.json"
-
-# Correctly modify the tsconfig.json for the test environment
-$config = Get-Content -Path ./tsconfig.json -Raw | ConvertFrom-Json
-$config.extends = "./tsconfig.base.json"
-$config.compilerOptions.baseUrl = "."
-$config | ConvertTo-Json -Depth 100 | Set-Content -Path ./tsconfig.json
-
-Write-Host "Testing TypeScript compilation..." -ForegroundColor Green
-npx tsc --project tsconfig.json
-
-if ($LASTEXITCODE -eq 0) {
-    Write-Host "✅ TypeScript compilation passed!" -ForegroundColor Green
-} else {
-    Write-Host "❌ TypeScript compilation failed!" -ForegroundColor Red
-    Set-Location ".."
-    Remove-Item -Recurse -Force "test-types-local"
-    Remove-Item -Force "hed-validator-*.tgz"
-    exit 1
-}
-
-Write-Host "Creating runtime test..." -ForegroundColor Green
-Copy-Item "../scripts/runtime-test.template.ts" "runtime-test.ts"
-
-Write-Host "Running runtime test..." -ForegroundColor Green
-npx tsx runtime-test.ts
-
-if ($LASTEXITCODE -eq 0) {
-    Write-Host "✅ Runtime test passed!" -ForegroundColor Green
-} else {
-    Write-Host "❌ Runtime test failed!" -ForegroundColor Red
-    Set-Location ".."
-    Remove-Item -Recurse -Force "test-types-local"
-    Remove-Item -Force "hed-validator-*.tgz"
-    exit 1
-}
-
-Write-Host "Cleaning up..." -ForegroundColor Green
-Set-Location ".."
-Remove-Item -Recurse -Force "test-types-local"
-Remove-Item -Force "hed-validator-*.tgz"
-
-Write-Host "✅ All TypeScript definition tests passed!" -ForegroundColor Green
diff --git a/scripts/test-types-local.js b/scripts/test-types-local.js
deleted file mode 100644
index 885f7112..00000000
--- a/scripts/test-types-local.js
+++ /dev/null
@@ -1,44 +0,0 @@
-#!/usr/bin/env node
-
-/**
- * Cross-platform script runner for TypeScript definition testing
- * Automatically detects the platform and runs the appropriate script
- */
-
-const { spawn } = require('node:child_process')
-const path = require('node:path')
-
-function runScript() {
-  const isWindows = process.platform === 'win32'
-
-  let command, args
-
-  if (isWindows) {
-    // Windows: Run PowerShell script
-    command = 'powershell'
-    args = ['-ExecutionPolicy', 'Bypass', '-File', './scripts/test-types-local-windows.ps1']
-  } else {
-    // Unix/Linux/macOS: Run bash script
-    command = 'sh'
-    args = ['./scripts/test-types-local-unix.sh']
-  }
-
-  console.log(`Running TypeScript definition tests on ${isWindows ? 'Windows' : 'Unix/Linux/macOS'}...`)
-
-  const childProcess = spawn(command, args, {
-    stdio: 'inherit',
-    shell: true,
-  })
-
-  childProcess.on('error', (error) => {
-    console.error(`Failed to start script: ${error.message}`)
-    process.exit(1)
-  })
-
-  childProcess.on('exit', (code) => {
-    process.exit(code || 0)
-  })
-}
-
-// Run the script
-runScript()
diff --git a/spec_tests/jsonTests.spec.js b/spec_tests/jsonTests.spec.js
index 8c2c0266..1a96f64a 100644
--- a/spec_tests/jsonTests.spec.js
+++ b/spec_tests/jsonTests.spec.js
@@ -1,18 +1,19 @@
+import * as fs from 'node:fs'
+import path from 'node:path'
+
 import chai from 'chai'
 const assert = chai.assert
-import { beforeAll, describe, afterAll } from '@jest/globals'
 
+import { beforeAll, describe, afterAll } from '@jest/globals'
 import { BidsHedIssue } from '../src/bids/types/issues'
 import { buildSchemas } from '../src/schema/init'
 import { SchemaSpec, SchemasSpec } from '../src/schema/specs'
-import { Schemas } from '../src/schema/containers'
-import path from 'node:path'
+import { HedSchemas } from '../src/schema/containers'
 import { BidsSidecar, BidsTsvFile } from '../src/bids'
 import { generateIssue, IssueError } from '../src/issues/issues'
 import { DefinitionManager } from '../src/parser/definitionManager'
 import parseTSV from '../src/bids/tsvParser'
 import { shouldRun } from '../tests/testHelpers/testUtilities'
-const fs = require('node:fs')
 
 const skipMap = new Map()
 const runAll = true
@@ -331,7 +332,7 @@ describe('HED validation using JSON tests', () => {
             hedMap.set(prefix, schema)
           }
         }
-        return new Schemas(hedMap)
+        return new HedSchemas(hedMap)
       }
 
       beforeAll(async () => {
diff --git a/src/bids/datasetParser.js b/src/bids/datasetParser.ts
similarity index 60%
rename from src/bids/datasetParser.js
rename to src/bids/datasetParser.ts
index 58d11ad6..9c9f2c8a 100644
--- a/src/bids/datasetParser.js
+++ b/src/bids/datasetParser.ts
@@ -12,10 +12,14 @@
 
 import fsp from 'node:fs/promises'
 import path from 'node:path'
-import { organizePaths } from '../utils/paths.js'
-import { generateIssue } from '../issues/issues'
-import { BidsHedIssue } from './types/issues'
+
+import { organizePaths } from '../utils/paths'
+import { IssueError } from '../issues/issues'
 import { buildBidsSchemas } from './schema'
+import { type BidsJsonFile } from './types/json'
+import { type HedSchemas } from '../schema/containers'
+
+type SchemaBuilder = (datasetDescription: BidsJsonFile) => Promise<HedSchemas>
 
 /**
  * Base class for BIDS file accessors.
@@ -23,74 +27,65 @@ import { buildBidsSchemas } from './schema'
  * This class provides a common interface for accessing files in a BIDS dataset, regardless of the underlying storage
  * mechanism. Subclasses must implement the `create` and `getFileContent` methods.
  */
-export class BidsFileAccessor {
+export abstract class BidsFileAccessor<FileType> {
   /**
    * The root directory of the dataset.
-   * @type {string}
    */
-  datasetRootDirectory
+  readonly datasetRootDirectory: string
 
   /**
    * Map of relative file paths to file representations.
-   * @type {Map<string, any>}
    */
-  fileMap
+  fileMap: Map<string, FileType>
 
   /**
    * Organized paths.
-   * @type {Map<string, Map<string, string[]>>}
    */
-  organizedPaths
+  organizedPaths: Map<string, Map<string, string[]>>
 
   /**
    * The HED schema builder function.
-   * @type {function}
    */
-  schemaBuilder
+  protected readonly schemaBuilder: SchemaBuilder
 
   /**
    * BIDS suffixes.
-   * @type {string[]}
    */
-  static SUFFIXES = ['dataset_description', 'participants', '_events', '_beh', '_scans', '_sessions', 'samples']
+  private static readonly SUFFIXES: string[] = [
+    'dataset_description',
+    'participants',
+    '_events',
+    '_beh',
+    '_scans',
+    '_sessions',
+    'samples',
+  ]
 
   /**
    * BIDS special directories.
-   * @type {string[]}
    */
-  static SPECIAL_DIRS = ['phenotype', 'stimuli']
+  private static readonly SPECIAL_DIRS: string[] = ['phenotype', 'stimuli']
 
   /**
    * Constructs a BidsFileAccessor.
    *
-   * @param {string} datasetRootDirectory The root directory of the dataset.
-   * @param {Map<string, any>} fileMap A map of relative file paths to file representations (e.g., `File` objects for web, full paths for Node.js).
+   * @param datasetRootDirectory The root directory of the dataset.
+   * @param fileMap A map of relative file paths to file representations (e.g., `File` objects for web, full paths for Node.js).
+   * @param schemaBuilder The HED schema builder function.
    */
-  constructor(datasetRootDirectory, fileMap) {
+  protected constructor(datasetRootDirectory: string, fileMap: Map<string, FileType>, schemaBuilder: SchemaBuilder) {
     if (typeof datasetRootDirectory !== 'string') {
-      throw new Error('BidsFileAccessor constructor requires a string for datasetRootDirectory.')
+      IssueError.generateAndThrowInternalError(
+        'BidsFileAccessor constructor requires a string for datasetRootDirectory.',
+      )
     }
     if (!(fileMap instanceof Map)) {
       // Ensure fileMap is a Map
-      throw new Error('BidsFileAccessor constructor requires a Map argument for fileMap.')
+      IssueError.generateAndThrowInternalError('BidsFileAccessor constructor requires a Map argument for fileMap.')
     }
     this.datasetRootDirectory = datasetRootDirectory
     this._initialize(fileMap)
-    this.schemaBuilder = null
-  }
-
-  /**
-   * Factory method to create a BidsFileAccessor.
-   *
-   * This method must be implemented by subclasses to handle environment-specific setup.
-   *
-   * @param {string | object} datasetRootDirectory The root directory of the dataset or a file-like object.
-   * @returns {Promise<BidsFileAccessor>} A Promise that resolves to a new BidsFileAccessor instance.
-   * @throws {Error} If the method is not implemented by a subclass.
-   */
-  static async create(datasetRootDirectory) {
-    // Use datasetRootDirectory in the error message to satisfy the linter
-    throw new Error(`BidsFileAccessor.create for '${datasetRootDirectory}' must be implemented by a subclass.`)
+    this.schemaBuilder = schemaBuilder
   }
 
   /**
@@ -98,16 +93,14 @@ export class BidsFileAccessor {
    *
    * This method filters the file map to include only BIDS-related files and organizes them by type and category.
    *
-   * @param {Map<string, any>} fileMap A map of relative file paths to file representations.
-   * @private
+   * @param fileMap A map of relative file paths to file representations.
    */
-  _initialize(fileMap) {
+  private _initialize(fileMap: Map<string, FileType>) {
     const relativeFilePaths = Array.from(fileMap.keys())
     const { candidates, organizedPaths } = organizePaths(
       relativeFilePaths,
       BidsFileAccessor.SUFFIXES,
       BidsFileAccessor.SPECIAL_DIRS,
-      ['json', 'tsv'],
     )
     this.organizedPaths = organizedPaths
 
@@ -123,19 +116,11 @@ export class BidsFileAccessor {
    *
    * This method must be implemented by subclasses to handle environment-specific file reading.
    *
-   * @param {string} relativePath The relative path to the file.
-   * @returns {Promise<string|null>} A promise that resolves with the file content as a string, or null if the file cannot be read.
-   * @throws {Error} If the method is not implemented by a subclass.
+   * @param relativePath The relative path to the file.
+   * @returns A promise that resolves with the file content as a string, or null if the file cannot be read.
+   * @throws {IssueError} If the method is not implemented by a subclass.
    */
-  async getFileContent(relativePath) {
-    if (!this.fileMap.has(relativePath)) {
-      return null
-    }
-    // Use relativePath in the error message to satisfy the linter
-    throw new Error(
-      `getFileContent for '${relativePath}': File found in map, but base class cannot determine how to read content. Subclass must implement.`,
-    )
-  }
+  public abstract getFileContent(relativePath: string): Promise<string | null>
 }
 
 /**
@@ -161,23 +146,20 @@ export class BidsFileAccessor {
  *
  * main();
  */
-export class BidsDirectoryAccessor extends BidsFileAccessor {
+export class BidsDirectoryAccessor extends BidsFileAccessor<string> {
   /**
    * Constructs a BidsDirectoryAccessor.
    *
-   * @param {string} datasetRootDirectory The absolute path to the dataset's root directory.
-   * @param {Map<string, string>} fileMap A map of relative file paths to their absolute paths.
-   * @throws {BidsHedIssue} If the dataset root directory path is invalid.
+   * @param datasetRootDirectory The absolute path to the dataset's root directory.
+   * @param fileMap A map of relative file paths to their absolute paths.
+   * @throws {IssueError} If the dataset root directory path is invalid.
    */
-  constructor(datasetRootDirectory, fileMap) {
+  private constructor(datasetRootDirectory: string, fileMap: Map<string, string>) {
     if (typeof datasetRootDirectory !== 'string' || !datasetRootDirectory) {
       const message = `Bids validation requires a non-empty string for the dataset root directory but received: ${datasetRootDirectory}`
-      throw BidsHedIssue.fromHedIssue(
-        generateIssue('fileReadError', { filename: datasetRootDirectory, message: `${message}` }),
-      )
+      IssueError.generateAndThrow('fileReadError', { filename: datasetRootDirectory, message: `${message}` })
     }
-    super(datasetRootDirectory, fileMap)
-    this.schemaBuilder = buildBidsSchemas
+    super(datasetRootDirectory, fileMap, buildBidsSchemas)
   }
 
   /**
@@ -185,13 +167,13 @@ export class BidsDirectoryAccessor extends BidsFileAccessor {
    *
    * This method recursively reads the specified directory and creates a file map.
    *
-   * @param {string} datasetRootDirectory The absolute path to the dataset's root directory.
-   * @returns {Promise<BidsDirectoryAccessor>} A Promise that resolves to a new BidsDirectoryAccessor instance.
-   * @throws {Error} If the dataset root directory path is empty.
+   * @param datasetRootDirectory The absolute path to the dataset's root directory.
+   * @returns A Promise that resolves to a new BidsDirectoryAccessor instance.
+   * @throws {IssueError} If the dataset root directory path is empty.
    */
-  static async create(datasetRootDirectory) {
+  public static async create(datasetRootDirectory: string): Promise<BidsDirectoryAccessor> {
     if (typeof datasetRootDirectory !== 'string' || !datasetRootDirectory) {
-      throw new Error('Must have a non-empty dataset root directory path.')
+      IssueError.generateAndThrowInternalError('Must have a non-empty dataset root directory path.')
     }
     const resolvedDatasetRoot = path.resolve(datasetRootDirectory)
     const fileMap = new Map()
@@ -202,10 +184,10 @@ export class BidsDirectoryAccessor extends BidsFileAccessor {
   /**
    * Asynchronously reads the content of a file from the file system.
    *
-   * @param {string} relativePath The relative path to the file within the dataset.
-   * @returns {Promise<string|null>} A promise that resolves with the file content as a string, or null if the file is not found or an error occurs.
+   * @param relativePath The relative path to the file within the dataset.
+   * @returns A promise that resolves with the file content as a string, or null if the file is not found or an error occurs.
    */
-  async getFileContent(relativePath) {
+  public async getFileContent(relativePath: string): Promise<string | null> {
     const absolutePath = this.fileMap.get(relativePath)
     if (!absolutePath) {
       return null
@@ -221,12 +203,11 @@ export class BidsDirectoryAccessor extends BidsFileAccessor {
   /**
    * Recursively reads directory contents and populates the file map.
    *
-   * @param {string} dir The directory to read.
-   * @param {string} baseDir The base directory to calculate relative paths from.
-   * @param {Map<string, string>} fileMapRef The Map to populate with relativePath: absolutePath.
-   * @private
+   * @param dir The directory to read.
+   * @param baseDir The base directory to calculate relative paths from.
+   * @param fileMapRef The Map to populate with relativePath: absolutePath.
    */
-  static async _readDirRecursive(dir, baseDir, fileMapRef) {
+  private static async _readDirRecursive(dir: string, baseDir: string, fileMapRef: Map<string, string>): Promise<void> {
     try {
       // Check if the current path is a directory before attempting to read it.
       // This handles cases where datasetRootDirectory itself might be a file or non-existent.
diff --git a/src/bids/index.js b/src/bids/index.ts
similarity index 83%
rename from src/bids/index.js
rename to src/bids/index.ts
index bf55be84..b01575cf 100644
--- a/src/bids/index.js
+++ b/src/bids/index.ts
@@ -21,18 +21,7 @@ export {
   BidsJsonFile,
   BidsSidecar,
   BidsHedIssue,
-  buildBidsSchemas,
   BidsFileAccessor,
   BidsDirectoryAccessor,
-}
-
-export default {
-  BidsDataset,
-  BidsTsvFile,
-  BidsJsonFile,
-  BidsSidecar,
-  BidsHedIssue,
   buildBidsSchemas,
-  BidsFileAccessor,
-  BidsDirectoryAccessor,
 }
diff --git a/src/bids/schema.js b/src/bids/schema.ts
similarity index 59%
rename from src/bids/schema.js
rename to src/bids/schema.ts
index f9e6deb9..47633bd3 100644
--- a/src/bids/schema.js
+++ b/src/bids/schema.ts
@@ -1,19 +1,22 @@
 /**
  * This module contains functions for building HED schemas for BIDS datasets.
+ *
  * @module bids/schema
  */
 
+import { type HedSchemas } from '../schema/containers'
 import { buildSchemas } from '../schema/init'
 import { SchemasSpec } from '../schema/specs'
+import { type BidsJsonFile } from './types/json'
 
 /**
  * Build a HED schema collection based on the defined BIDS schemas.
  *
- * @param {BidsJsonFile} datasetDescription The description of the BIDS dataset being validated.
- * @returns {Promise} A Promise with the schema collection, or null if the specification is missing.
+ * @param datasetDescription The description of the BIDS dataset being validated.
+ * @returns A Promise with the schema collection, or null if the specification is missing.
  * @throws {IssueError} If the schema specification is invalid.
  */
-export async function buildBidsSchemas(datasetDescription) {
+export async function buildBidsSchemas(datasetDescription: BidsJsonFile): Promise<HedSchemas> {
   if (datasetDescription?.jsonData?.HEDVersion) {
     const schemasSpec = SchemasSpec.parseVersionSpecs(datasetDescription.jsonData.HEDVersion)
     return buildSchemas(schemasSpec)
diff --git a/src/bids/tsvParser.js b/src/bids/tsvParser.js
deleted file mode 100644
index b2728983..00000000
--- a/src/bids/tsvParser.js
+++ /dev/null
@@ -1,61 +0,0 @@
-/**
- * This module provides functions for parsing TSV files.
- *
- * @module bids/tsvParser
- */
-
-const stripBOM = (str) => str.replace(/^\uFEFF/, '')
-const normalizeEOL = (str) => str.replace(/\r\n/g, '\n').replace(/\r/g, '\n')
-const isContentfulRow = (row) => row && !/^\s*$/.test(row)
-
-/**
- * Parse a TSV file
- *
- * @param {string} contents The contents of a TSV file.
- * @returns {Map<string, string[]>} The parsed contents of the TSV file.
- */
-export function parseTSV(contents) {
-  const columns = new Map()
-  const rows = stripBOM(normalizeEOL(contents))
-    .split('\n')
-    .filter(isContentfulRow)
-    .map((str) => str.split('\t').map((cell) => cell.trim()))
-  const headers = rows.length ? rows[0] : []
-
-  headers.forEach((x) => {
-    columns.set(x, [])
-  })
-  for (let i = 1; i < rows.length; i++) {
-    for (let j = 0; j < headers.length; j++) {
-      columns.get(headers[j])?.push(rows[i][j])
-    }
-  }
-  for (const [key, value] of columns) {
-    columns.set(key, value)
-  }
-  return columns
-}
-/**
- * Convert parsed TSV file data from the old BIDS format to the new BIDS format.
- *
- * @param {{headers: string[], rows: string[][]}} oldParsedTsv Parsed TSV data using the old format
- * @returns {Map<string, string[]>} The parsed contents of the TSV file, using the new format.
- */
-export function convertParsedTSVData(oldParsedTsv) {
-  const columns = new Map()
-
-  oldParsedTsv.headers.forEach((x) => {
-    columns.set(x, [])
-  })
-  for (let i = 1; i < oldParsedTsv.rows.length; i++) {
-    for (let j = 0; j < oldParsedTsv.headers.length; j++) {
-      columns.get(oldParsedTsv.headers[j])?.push(oldParsedTsv.rows[i][j])
-    }
-  }
-  for (const [key, value] of columns) {
-    columns.set(key, value)
-  }
-  return columns
-}
-
-export default parseTSV
diff --git a/src/bids/tsvParser.ts b/src/bids/tsvParser.ts
new file mode 100644
index 00000000..d4e0b1ff
--- /dev/null
+++ b/src/bids/tsvParser.ts
@@ -0,0 +1,70 @@
+/**
+ * This module provides functions for parsing TSV files.
+ *
+ * @module bids/tsvParser
+ */
+
+export type ParsedTSV = Map<string, string[]>
+export type OldParsedTSV = {
+  headers: string[]
+  rows: string[][]
+}
+
+const stripBOM = (str: string) => str.replace(/^\uFEFF/, '')
+const normalizeEOL = (str: string) => str.replace(/\r\n/g, '\n').replace(/\r/g, '\n')
+const isContentfulRow = (row: string) => row && !/^\s*$/.test(row)
+
+/**
+ * Parse a TSV file.
+ *
+ * @param contents The contents of a TSV file.
+ * @returns The parsed contents of the TSV file.
+ */
+export function parseTSV(contents: string): ParsedTSV {
+  const rows = stripBOM(normalizeEOL(contents))
+    .split('\n')
+    .filter(isContentfulRow)
+    .map((str) => str.split('\t').map((cell) => cell.trim()))
+
+  if (rows.length === 0) {
+    return new Map<string, string[]>()
+  }
+
+  const headers = rows[0]
+
+  return createTsvMap(headers, rows)
+}
+
+/**
+ * Convert parsed TSV file data from the old BIDS format to the new BIDS format.
+ *
+ * @param oldParsedTsv Parsed TSV data using the old format
+ * @returns The parsed contents of the TSV file, using the new format.
+ */
+export function convertParsedTSVData(oldParsedTsv: OldParsedTSV): ParsedTSV {
+  return createTsvMap(oldParsedTsv.headers, oldParsedTsv.rows)
+}
+
+/**
+ * Create a parsed TSV map.
+ *
+ * @param headers The list of headers.
+ * @param rows The grid of rows and cells.
+ * @returns The parsed contents of the TSV file.
+ */
+function createTsvMap(headers: string[], rows: string[][]): ParsedTSV {
+  const columns = new Map<string, string[]>()
+
+  for (const header of headers) {
+    columns.set(header, [])
+  }
+  for (let i = 1; i < rows.length; i++) {
+    for (let j = 0; j < headers.length; j++) {
+      columns.get(headers[j])?.push(rows[i][j])
+    }
+  }
+
+  return columns
+}
+
+export default parseTSV
diff --git a/src/bids/types/dataset.js b/src/bids/types/dataset.ts
similarity index 74%
rename from src/bids/types/dataset.js
rename to src/bids/types/dataset.ts
index c54fdf5f..ecad091d 100644
--- a/src/bids/types/dataset.js
+++ b/src/bids/types/dataset.ts
@@ -2,13 +2,20 @@
  * This module contains the {@link BidsDataset} class, which represents a BIDS dataset for HED validation.
  * @module bids/types/dataset
  */
+
+import path from 'node:path'
+
 import { BidsFileAccessor } from '../datasetParser'
 import { BidsSidecar } from './json'
 import { BidsTsvFile } from './tsv'
 import { generateIssue, IssueError } from '../../issues/issues'
 import { getMergedSidecarData, organizedPathsGenerator } from '../../utils/paths'
 import { BidsHedIssue } from './issues'
-import path from 'node:path'
+import { type HedSchemas } from '../../schema/containers'
+
+type BidsFileAccessorConstructor = {
+  create(datasetRootDirectory: string | object): Promise<BidsFileAccessor>
+}
 
 /**
  * A BIDS dataset.
@@ -42,47 +49,41 @@ import path from 'node:path'
  *
  * @property {Map<string, BidsSidecar>} sidecarMap Map of BIDS sidecar files that contain HED annotations.
  * @property {string|null} datasetRootDirectory The dataset's root directory as an absolute path (Node.js context).
- * @property {Schemas} hedSchemas The HED schemas used to validate this dataset.
+ * @property {HedSchemas} hedSchemas The HED schemas used to validate this dataset.
  * @property {BidsFileAccessor} fileAccessor The BIDS file accessor.
  */
 export class BidsDataset {
   /**
    * Map of BIDS sidecar files that contain HED annotations.
    * The keys are relative paths and the values are BidsSidecar objects.
-   * @type {Map<string, BidsSidecar>}
    */
-  sidecarMap
+  public sidecarMap: Map<string, BidsSidecar>
 
   /**
    * The dataset's root directory as an absolute path (Node.js context).
-   * @type {string|null}
    */
-  datasetRootDirectory
+  public readonly datasetRootDirectory: string | null
 
   /**
    * The HED schemas used to validate this dataset.
-   * @type {Schemas}
    */
-  hedSchemas
+  private hedSchemas: HedSchemas
 
   /**
    * The BIDS file accessor.
-   * @type {BidsFileAccessor}
-   * @public
    */
-  fileAccessor
+  public fileAccessor: BidsFileAccessor
 
   /**
    * Constructor for a BIDS dataset.
    *
-   * @param {BidsFileAccessor} accessor An instance of BidsFileAccessor (or its subclasses).
-   * @throws {Error} If accessor is not an instance of BidsFileAccessor.
-   * @private
+   * @param accessor An instance of BidsFileAccessor (or its subclasses).
+   * @throws {IssueError} If accessor is not an instance of BidsFileAccessor.
    * @see BidsDataset.create
    */
-  constructor(accessor) {
+  private constructor(accessor: BidsFileAccessor) {
     if (!(accessor instanceof BidsFileAccessor)) {
-      throw new Error('BidsDataset constructor requires an instance of BidsFileAccessor.\n')
+      IssueError.generateAndThrowInternalError('BidsDataset constructor requires an instance of BidsFileAccessor')
     }
     this.fileAccessor = accessor
     this.datasetRootDirectory = accessor.datasetRootDirectory // Set from fileAccessor
@@ -97,34 +98,25 @@ export class BidsDataset {
    * Note: This method will fail to create a BidsDataset if a valid HED schema cannot be loaded or any of the
    * JSON sidecars cannot be loaded. It does not perform HED validation.
    *
-   * @param {string | object} rootOrFiles The root directory of the dataset or a file-like object.
-   * @param {function} fileAccessorClass The BidsFileAccessor class to use for accessing files.
-   * @returns {Promise<[BidsDataset|null, BidsHedIssue[]]>} A Promise that resolves to a two-element array containing the BidsDataset instance (or null if creation failed) and an array of issues.
-   *
+   * @param rootOrFiles The root directory of the dataset or a file-like object.
+   * @param fileAccessorClass The BidsFileAccessor class to use for accessing files.
+   * @returns A Promise that resolves to a two-element array containing the BidsDataset instance (or null if creation failed) and an array of issues.
    */
-  static async create(rootOrFiles, fileAccessorClass) {
+  static async create(
+    rootOrFiles: string | object,
+    fileAccessorClass: BidsFileAccessorConstructor,
+  ): Promise<[BidsDataset | null, BidsHedIssue[]]> {
     let dataset = null
-    const issues = []
+    const issues: BidsHedIssue[] = []
     try {
       const accessor = await fileAccessorClass.create(rootOrFiles)
       dataset = new BidsDataset(accessor)
       const schemaIssues = await dataset.setHedSchemas()
       issues.push(...schemaIssues)
-      if (dataset.hedSchemas === null) {
-        return [null, issues]
-      }
       const sidecarIssues = await dataset.setSidecars()
       issues.push(...sidecarIssues)
     } catch (error) {
-      if (error instanceof IssueError) {
-        issues.push(error.issue)
-      } else {
-        issues.push({
-          code: 'INTERNAL_ERROR',
-          message: `An unexpected error occurred while creating the BidsDataset: ${error.message}`,
-          location: typeof rootOrFiles === 'string' ? rootOrFiles : 'Uploaded files',
-        })
-      }
+      issues.push(...BidsHedIssue.fromHedIssues(error, null))
     }
     if (issues.length > 0) {
       dataset = null
@@ -138,16 +130,16 @@ export class BidsDataset {
    * This method reads the `dataset_description.json` file, extracts the `HEDVersion` field,
    * and builds the HED schemas. The result is stored in {@link BidsDataset.hedSchemas}.
    *
-   * @returns {Promise<BidsHedIssue[]>} A promise that resolves to an array of issues encountered during schema loading.
+   * @returns A promise that resolves to an array of issues encountered during schema loading.
    * @throws {IssueError} If `dataset_description.json` is missing or contains an invalid HED specification.
    */
-  async setHedSchemas() {
+  async setHedSchemas(): Promise<BidsHedIssue[]> {
     let description
 
     try {
       const descriptionContentString = await this.fileAccessor.getFileContent('dataset_description.json')
       if (descriptionContentString === null || typeof descriptionContentString === 'undefined') {
-        throw new IssueError(generateIssue('missingSchemaSpecification', { file: 'dataset_description.json' }))
+        IssueError.generateAndThrow('missingSchemaSpecification', { file: 'dataset_description.json' })
       }
       description = {
         jsonData: JSON.parse(descriptionContentString),
@@ -156,23 +148,19 @@ export class BidsDataset {
       if (e instanceof IssueError) {
         throw e
       }
-      throw new IssueError(generateIssue('missingSchemaSpecification', { file: 'dataset_description.json' }))
+      IssueError.generateAndThrow('missingSchemaSpecification', { file: 'dataset_description.json' })
     }
 
     try {
       this.hedSchemas = await this.fileAccessor.schemaBuilder(description)
       if (this.hedSchemas === null) {
-        throw new IssueError(
-          generateIssue('invalidSchemaSpecification', { spec: description.jsonData?.HEDVersion || null }),
-        )
+        IssueError.generateAndThrow('invalidSchemaSpecification', { spec: description.jsonData?.HEDVersion || null })
       }
     } catch (e) {
       if (e instanceof IssueError) {
         throw e
       }
-      throw new IssueError(
-        generateIssue('invalidSchemaSpecification', { spec: description.jsonData?.HEDVersion || null }),
-      )
+      IssueError.generateAndThrow('invalidSchemaSpecification', { spec: description.jsonData?.HEDVersion || null })
     }
     return []
   }
@@ -185,9 +173,9 @@ export class BidsDataset {
    *
    * Note: This method does not validate the HED data within the sidecars; it only parses them.
    *
-   * @returns {Promise<BidsHedIssue[]>} A promise that resolves to an array of issues encountered during sidecar parsing.
+   * @returns A promise that resolves to an array of issues encountered during sidecar parsing.
    */
-  async setSidecars() {
+  async setSidecars(): Promise<BidsHedIssue[]> {
     this.sidecarMap = new Map()
     const issues = []
     const organizedPaths = this.fileAccessor.organizedPaths
@@ -204,7 +192,7 @@ export class BidsDataset {
         const promise = this.fileAccessor
           .getFileContent(jsonPath)
           .then((jsonText) => {
-            const sidecarIssues = []
+            const sidecarIssues: BidsHedIssue[] = []
             if (jsonText === null) {
               const errorMessage = `Could not read JSON file: ${jsonPath}`
               sidecarIssues.push(
@@ -266,9 +254,9 @@ export class BidsDataset {
    * Note: If any of the sidecars have errors (not just warnings), the TSV files will not be validated.
    * This is because a single error in a sidecar can result in errors on every line of a TSV file.
    *
-   * @returns {Promise<BidsHedIssue[]>} A promise that resolves to an array of issues found during validation.
+   * @returns A promise that resolves to an array of issues found during validation.
    */
-  async validate() {
+  async validate(): Promise<BidsHedIssue[]> {
     const issues = this.validateSidecars()
     if (issues.some((issue) => issue.severity === 'error')) {
       return issues
@@ -282,11 +270,10 @@ export class BidsDataset {
    * This method iterates through all JSON sidecars and validates the HED data within them.
    * Note: The data has already been parsed into BidsSidecar objects.
    *
-   * @returns {BidsHedIssue[]} An array of issues found during sidecar validation.
-   * @private
+   * @returns An array of issues found during sidecar validation.
    */
-  validateSidecars() {
-    let issues = []
+  private validateSidecars(): BidsHedIssue[] {
+    let issues: BidsHedIssue[] = []
 
     for (const relativePath of organizedPathsGenerator(this.fileAccessor.organizedPaths, '.json')) {
       const sidecar = this.sidecarMap.get(relativePath)
@@ -303,11 +290,10 @@ export class BidsDataset {
    * This method iterates through all `.tsv` files, merges them with the corresponding JSON sidecars,
    * and validates the HED data within them.
    *
-   * @returns {Promise<BidsHedIssue[]>} A promise that resolves to an array of issues found during TSV validation.
-   * @private
+   * @returns A promise that resolves to an array of issues found during TSV validation.
    */
-  async validateTsvFiles() {
-    let issues = []
+  private async validateTsvFiles(): Promise<BidsHedIssue[]> {
+    let issues: BidsHedIssue[] = []
     for (const [category, catMap] of this.fileAccessor.organizedPaths) {
       const tsvPaths = catMap.get('tsv') || []
       const jsonPaths = catMap.get('json') || []
@@ -324,13 +310,12 @@ export class BidsDataset {
    * This method reads the TSV file content, merges it with corresponding sidecar data,
    * creates a BidsTsvFile object, and validates the HED data within it.
    *
-   * @param {string} tsvPath The relative path to the TSV file.
-   * @param {string} category The BIDS category (e.g., 'sub-001/ses-001/func').
-   * @param {string[]} jsonPaths Array of JSON sidecar paths for this category of tsv.
-   * @returns {Promise<BidsHedIssue[]>} A promise that resolves to an array of issues found during validation of this TSV file.
-   * @private
+   * @param tsvPath The relative path to the TSV file.
+   * @param category The BIDS category (e.g., 'sub-001/ses-001/func').
+   * @param jsonPaths Array of JSON sidecar paths for this category of tsv.
+   * @returns A promise that resolves to an array of issues found during validation of this TSV file.
    */
-  async _validateTsvFile(tsvPath, category, jsonPaths) {
+  private async _validateTsvFile(tsvPath: string, category: string, jsonPaths: string[]): Promise<BidsHedIssue[]> {
     // Read the TSV file content -- if none do not proceed.
     const parsedPath = path.parse(tsvPath)
     const tsvContents = await this.fileAccessor.getFileContent(tsvPath)
@@ -361,13 +346,12 @@ export class BidsDataset {
    * For special directories (phenotype, stimuli), it looks for a direct JSON counterpart.
    * For other files, it uses the BIDS inheritance hierarchy to merge multiple sidecars.
    *
-   * @param {string} tsvPath The relative path to the TSV file.
-   * @param {string} category The BIDS category (e.g., 'sub-001/ses-001/func').
-   * @param {string[]} jsonPaths Array of JSON sidecar paths for this category.
-   * @returns {object} The merged sidecar data object, or empty object if no applicable sidecars found.
-   * @private
+   * @param tsvPath The relative path to the TSV file.
+   * @param category The BIDS category (e.g., 'sub-001/ses-001/func').
+   * @param jsonPaths Array of JSON sidecar paths for this category.
+   * @returns The merged sidecar data object, or empty object if no applicable sidecars found.
    */
-  _getSidecarData(tsvPath, category, jsonPaths) {
+  private _getSidecarData(tsvPath: string, category: string, jsonPaths: string[]): Record<string, unknown> {
     const parsedPath = path.parse(tsvPath)
 
     if (BidsFileAccessor.SPECIAL_DIRS.includes(category)) {
@@ -378,7 +362,6 @@ export class BidsDataset {
       }
       return {}
     }
-    const mergedSidecarData = getMergedSidecarData(tsvPath, jsonPaths, this.sidecarMap)
-    return mergedSidecarData
+    return getMergedSidecarData(tsvPath, jsonPaths, this.sidecarMap)
   }
 }
diff --git a/src/bids/types/file.js b/src/bids/types/file.js
deleted file mode 100644
index e834d187..00000000
--- a/src/bids/types/file.js
+++ /dev/null
@@ -1,87 +0,0 @@
-/**
- * This module contains the {@link BidsFile} class, which is the base class for BIDS files.
- *
- * @module bids/types/file
- */
-
-import { BidsHedIssue } from './issues'
-import { generateIssue } from '../../issues/issues'
-
-/**
- * A BIDS file.
- */
-export class BidsFile {
-  /**
-   * The name of this file.
-   * @type {string}
-   */
-  name
-
-  /**
-   * The Object representing this file data.
-   * This is used to generate {@link BidsHedIssue} objects.
-   * @type {Object}
-   */
-  file
-
-  /**
-   * The validator class used to validate this file.
-   * @private
-   */
-  _validatorClass
-
-  constructor(name, file, validatorClass) {
-    this.name = name
-    this.file = file
-    this._validatorClass = validatorClass
-  }
-
-  /**
-   * Validate this validator's tsv file.
-   *
-   * @param {Schemas} schemas - The HED schemas used to validate this file.
-   * @returns {BidsHedIssue[]} - Any issues found during validation of this TSV file.
-   */
-  validate(schemas) {
-    if (!this.hasHedData) {
-      return []
-    }
-    if (!schemas) {
-      return [
-        BidsHedIssue.fromHedIssue(
-          generateIssue('missingSchemaSpecification', {
-            message: 'No valid HED schema specification was supplied.',
-          }),
-          this.file,
-        ),
-      ]
-    }
-
-    try {
-      const validator = new this.validatorClass(this, schemas)
-      validator.validate()
-      return [...validator.errors, ...validator.warnings]
-    } catch (error) {
-      // The low-level parsing throws exceptions with the issue encapsulated.
-      return BidsHedIssue.fromHedIssues(error, this.file)
-    }
-  }
-
-  /**
-   * Determine whether this file has any HED data.
-   *
-   * @returns {boolean}
-   */
-  get hasHedData() {
-    return false
-  }
-
-  /**
-   * The validator class used to validate this file.
-   *
-   * @returns {function} The validator class used to validate this file.
-   */
-  get validatorClass() {
-    return this._validatorClass
-  }
-}
diff --git a/src/bids/types/file.ts b/src/bids/types/file.ts
new file mode 100644
index 00000000..473f054a
--- /dev/null
+++ b/src/bids/types/file.ts
@@ -0,0 +1,106 @@
+/**
+ * This module contains the {@link BidsFile} class, which is the base class for BIDS files.
+ *
+ * @module bids/types/file
+ */
+
+import { BidsHedIssue } from './issues'
+import { type BidsValidator } from '../validator/validator'
+import { generateIssue } from '../../issues/issues'
+import { type HedSchemas } from '../../schema/containers'
+
+type BidsValidatorConstructor = {
+  new (file: BidsFile, schemas: HedSchemas): BidsValidator
+}
+
+/**
+ * A BIDS file.
+ */
+export abstract class BidsFile {
+  /**
+   * The name of this file.
+   */
+  public readonly name: string
+
+  /**
+   * The Object representing this file data.
+   * This is used to generate {@link BidsHedIssue} objects.
+   */
+  public readonly file: any
+
+  /**
+   * The validator class used to validate this file.
+   */
+  readonly #validatorClass: BidsValidatorConstructor
+
+  /**
+   * Constructor.
+   *
+   * @param name The name of this file.
+   * @param file The Object representing this file data.
+   * @param validatorClass The validator class used to validate this file.
+   */
+  protected constructor(name: string, file: any, validatorClass: BidsValidatorConstructor) {
+    this.name = name
+    this.file = file
+    this.#validatorClass = validatorClass
+  }
+
+  /**
+   * Override of {@link https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Object/toString | Object.prototype.toString}.
+   *
+   * @returns The file name.
+   */
+  public toString(): string {
+    return this.name
+  }
+
+  /**
+   * Validate this validator's file.
+   *
+   * @param schemas The HED schemas used to validate this file.
+   * @returns Any issues found during validation of this TSV file.
+   */
+  public validate(schemas: HedSchemas): BidsHedIssue[] {
+    if (!this.hasHedData) {
+      return []
+    }
+    if (!schemas) {
+      return [
+        BidsHedIssue.fromHedIssue(
+          generateIssue('missingSchemaSpecification', {
+            message: 'No valid HED schema specification was supplied.',
+          }),
+          this.file,
+        ),
+      ]
+    }
+
+    try {
+      const validator = new this.validatorClass(this, schemas)
+      validator.validate()
+      return [...validator.errors, ...validator.warnings]
+    } catch (error) {
+      // The low-level parsing throws exceptions with the issue encapsulated.
+      return BidsHedIssue.fromHedIssues(error, this.file)
+    }
+  }
+
+  /**
+   * Determine whether this file has any HED data.
+   *
+   * @returns Whether this file has any HED data.
+   */
+  public get hasHedData(): boolean {
+    return false
+  }
+
+  /**
+   * The validator class used to validate this file.
+   *
+   * @returns The validator class used to validate this file.
+   */
+  public get validatorClass(): BidsValidatorConstructor {
+    return this.#validatorClass
+  }
+}
diff --git a/src/bids/types/issues.js b/src/bids/types/issues.ts
similarity index 53%
rename from src/bids/types/issues.js
rename to src/bids/types/issues.ts
index 6f6ca9ff..d4e3bd12 100644
--- a/src/bids/types/issues.js
+++ b/src/bids/types/issues.ts
@@ -2,11 +2,11 @@
  * Provides a wrapper for HED validation issues that is compatible with the BIDS validator.
  * @module bids/types/issues
  */
-import { generateIssue, IssueError } from '../../issues/issues.js'
 
-/**
- * @typedef {import('../../issues/issues.js').Issue} Issue
- */
+import { generateIssue, type Issue, IssueError, type IssueParameters } from '../../issues/issues'
+import { type IssueLevel } from '../../issues/data'
+
+type BidsIssueCode = 'HED_ERROR' | 'HED_WARNING' | 'INTERNAL_ERROR'
 
 /**
  * A wrapper for a HED validation issue that is compatible with the BIDS validator.
@@ -17,64 +17,60 @@ import { generateIssue, IssueError } from '../../issues/issues.js'
 export class BidsHedIssue {
   /**
    * The file associated with this issue.
-   * @type {object}
    */
-  file
+  public readonly file: any
 
   /**
    * The underlying HED issue object.
-   * @type {Issue}
    */
-  hedIssue
+  public readonly hedIssue: Issue
 
   /**
    * The BIDS-compliant issue code.
-   * @type {string}
    */
-  code
+  public readonly code: BidsIssueCode
 
   /**
    * The HED-specific issue code.
-   * @type {string}
    */
-  subCode
+  public readonly subCode: string
 
   /**
    * The severity of the issue (e.g., 'error' or 'warning').
-   * @type {string}
    */
-  severity
+  public readonly severity: IssueLevel
 
   /**
    * The human-readable issue message.
-   * @type {string}
    */
-  issueMessage
+  public issueMessage: string
 
   /**
    * The line number where the issue occurred.
-   * @type {number}
    */
-  line
+  public readonly line: string
 
   /**
    * The path to the file where the issue occurred.
-   * @type {string}
    */
-  location
+  public readonly location: string
 
   /**
    * Constructs a BidsHedIssue object.
    *
-   * @param {Issue} hedIssue The HED issue object to be wrapped.
-   * @param {object} file The file object associated with this issue.
+   * @deprecated Direct use of this constructor is not recommended. Use {@link BidsHedIssue.fromHedIssues}.
+   *
+   * @param hedIssue The HED issue object to be wrapped.
+   * @param file The file object associated with this issue.
    */
-  constructor(hedIssue, file) {
+  public constructor(hedIssue: Issue, file: any) {
     this.hedIssue = hedIssue
     this.file = file
 
     // BIDS fields
-    if (hedIssue.level === 'warning') {
+    if (hedIssue.internalCode === 'internalError') {
+      this.code = 'INTERNAL_ERROR'
+    } else if (hedIssue.level === 'warning') {
       this.code = 'HED_WARNING'
     } else {
       this.code = 'HED_ERROR'
@@ -86,14 +82,23 @@ export class BidsHedIssue {
     this.location = file?.path
   }
 
+  /**
+   * Override of {@link https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Object/toString | Object.prototype.toString}.
+   *
+   * @returns The issue message.
+   */
+  public toString(): string {
+    return this.issueMessage
+  }
+
   /**
    * Transforms a list of issues into a Map, keyed by severity level.
    *
-   * @param {BidsHedIssue[]} issues A list of BIDS HED issues.
-   * @returns {Map<string, BidsHedIssue[]>} A map where keys are severity levels and values are arrays of issues.
+   * @param issues A list of BIDS HED issues.
+   * @returns A map where keys are severity levels and values are arrays of issues.
    */
-  static splitErrors(issues) {
-    const issueMap = new Map()
+  public static splitErrors(issues: BidsHedIssue[]): Map<IssueLevel, BidsHedIssue[]> {
+    const issueMap = new Map<IssueLevel, BidsHedIssue[]>()
     for (const issue of issues) {
       if (!issueMap.has(issue.severity)) {
         issueMap.set(issue.severity, [])
@@ -106,11 +111,11 @@ export class BidsHedIssue {
   /**
    * Categorizes a list of issues by their subCode values.
    *
-   * @param {BidsHedIssue[]} issues A list of BIDS HED issues.
-   * @returns {Map<string, BidsHedIssue[]>} A map where keys are HED issue codes and values are arrays of issues.
+   * @param issues A list of BIDS HED issues.
+   * @returns A map where keys are HED issue codes and values are arrays of issues.
    */
-  static categorizeByCode(issues) {
-    const codeMap = new Map()
+  public static categorizeByCode(issues: BidsHedIssue[]): Map<string, BidsHedIssue[]> {
+    const codeMap = new Map<string, BidsHedIssue[]>()
     for (const issue of issues) {
       if (!codeMap.has(issue.subCode)) {
         codeMap.set(issue.subCode, [])
@@ -123,12 +128,12 @@ export class BidsHedIssue {
   /**
    * Reduces a list of issues to one of each subCode that occurred in the incoming list, summarizing the occurrences.
    *
-   * @param {BidsHedIssue[]} issues A list of BIDS HED issues.
-   * @returns {BidsHedIssue[]} A new list of issues with one issue of each type.
+   * @param issues A list of BIDS HED issues.
+   * @returns A new list of issues with one issue of each type.
    */
-  static reduceIssues(issues) {
+  public static reduceIssues(issues: BidsHedIssue[]): BidsHedIssue[] {
     const categorizedIssues = BidsHedIssue.categorizeByCode(issues)
-    const reducedIssues = []
+    const reducedIssues: BidsHedIssue[] = []
     for (const issueList of categorizedIssues.values()) {
       if (issueList.length === 0) {
         continue
@@ -154,12 +159,16 @@ export class BidsHedIssue {
    * If `limitErrors` is true, the output will be reduced to one issue of each subCode type in the list.
    * The message of each "representative" issue will be updated to summarize the number of occurrences and files.
    *
-   * @param {BidsHedIssue[]} issues A list of BIDS HED issues.
-   * @param {boolean} checkWarnings Whether to include warnings in the output.
-   * @param {boolean} limitErrors Whether to reduce the list of issues to one of each type.
-   * @returns {BidsHedIssue[]} The processed list of issues.
+   * @param issues A list of BIDS HED issues.
+   * @param checkWarnings Whether to include warnings in the output.
+   * @param limitErrors Whether to reduce the list of issues to one of each type.
+   * @returns The processed list of issues.
    */
-  static processIssues(issues, checkWarnings = false, limitErrors = false) {
+  public static processIssues(
+    issues: BidsHedIssue[],
+    checkWarnings: boolean = false,
+    limitErrors: boolean = false,
+  ): BidsHedIssue[] {
     const issueMap = BidsHedIssue.splitErrors(issues)
     const errorIssues = issueMap.get('error') ?? []
     const warningIssues = issueMap.get('warning') ?? []
@@ -179,18 +188,22 @@ export class BidsHedIssue {
   /**
    * Converts one or more HED issues into BIDS-compatible issues.
    *
-   * @param {Error|Issue[]} hedIssues One or more HED-format issues.
-   * @param {object} file A BIDS-format file object used to generate {@link BidsHedIssue} objects.
-   * @param {object?} extraParameters Any extra parameters to inject into the {@link Issue} objects.
-   * @returns {BidsHedIssue[]} An array of BIDS-compatible issues.
+   * @param hedIssues One or more HED-format issues.
+   * @param file A BIDS-format file object used to generate {@link BidsHedIssue} objects.
+   * @param extraParameters Any extra parameters to inject into the {@link Issue} objects.
+   * @returns An array of BIDS-compatible issues.
    */
-  static fromHedIssues(hedIssues, file, extraParameters) {
-    if (hedIssues.length === 0) {
-      return []
-    } else if (hedIssues instanceof IssueError) {
+  public static fromHedIssues(
+    hedIssues: Error | Issue[],
+    file: object,
+    extraParameters: IssueParameters = {},
+  ): BidsHedIssue[] {
+    if (hedIssues instanceof IssueError) {
       return [BidsHedIssue.fromHedIssue(hedIssues.issue, file, extraParameters)]
     } else if (hedIssues instanceof Error) {
       return [new BidsHedIssue(generateIssue('internalError', { message: hedIssues.message }), file ?? null)]
+    } else if (hedIssues.length === 0) {
+      return []
     } else {
       return hedIssues.map((hedIssue) => BidsHedIssue.fromHedIssue(hedIssue, file, extraParameters))
     }
@@ -199,31 +212,29 @@ export class BidsHedIssue {
   /**
    * Converts a single HED issue into a BIDS-compatible issue.
    *
-   * @param {Issue} hedIssue A HED-format issue.
-   * @param {object} file A BIDS-format file object used to generate a {@link BidsHedIssue} object.
-   * @param {object?} extraParameters Any extra parameters to inject into the {@link Issue} object.
-   * @returns {BidsHedIssue} The BIDS-compatible issue.
-   */
-  static fromHedIssue(hedIssue, file, extraParameters) {
-    Object.assign(hedIssue.parameters, extraParameters)
-    hedIssue.generateMessage()
+   * @param hedIssue A HED-format issue.
+   * @param file A BIDS-format file object used to generate a {@link BidsHedIssue} object.
+   * @param extraParameters Any extra parameters to inject into the {@link Issue} object.
+   * @returns The BIDS-compatible issue.
+   */
+  public static fromHedIssue(hedIssue: Issue, file: object, extraParameters: IssueParameters = {}): BidsHedIssue {
+    hedIssue.addParameters(extraParameters)
     return new BidsHedIssue(hedIssue, file)
   }
 
   /**
    * Transforms a list of mixed-format issues into BIDS-compatible issues.
    *
-   * @param {Array<BidsHedIssue|IssueError|Error>} issues A list of mixed-format issues.
-   * @param {object} file A BIDS-format file object used to generate {@link BidsHedIssue} objects.
-   * @returns {BidsHedIssue[]} An array of BIDS-compatible issues.
+   * @param issues A list of mixed-format issues.
+   * @param file A BIDS-format file object used to generate {@link BidsHedIssue} objects.
+   * @returns An array of BIDS-compatible issues.
    */
-  static transformToBids(issues, file = null) {
+  public static transformToBids(issues: Array<BidsHedIssue | Error>, file: object = null): BidsHedIssue[] {
     return issues.map((issue) => {
       if (issue instanceof BidsHedIssue) {
         return issue
       } else if (issue instanceof IssueError) {
-        const issueFile = issue.issue.file || file
-        return BidsHedIssue.fromHedIssue(issue.issue, issueFile, issue.issue.parameters)
+        return BidsHedIssue.fromHedIssue(issue.issue, file)
       } else if (issue instanceof Error) {
         return new BidsHedIssue(generateIssue('internalError', { message: issue.message }), file)
       } else {
@@ -231,4 +242,18 @@ export class BidsHedIssue {
       }
     })
   }
+
+  /**
+   * Add new parameters to the underlying HED issues of a list of BIDS issues and regenerate the issue messages.
+   *
+   * @param issues A list of BIDS-compatible issues.
+   * @param parameters The parameters to add.
+   */
+  public static addIssueParameters(issues: BidsHedIssue[], parameters: IssueParameters): void {
+    for (const issue of issues) {
+      const hedIssue = issue.hedIssue
+      hedIssue.addParameters(parameters)
+      issue.issueMessage = hedIssue.message
+    }
+  }
 }
diff --git a/src/bids/types/json.js b/src/bids/types/json.ts
similarity index 68%
rename from src/bids/types/json.js
rename to src/bids/types/json.ts
index c78d7ae6..1ee73594 100644
--- a/src/bids/types/json.js
+++ b/src/bids/types/json.ts
@@ -9,31 +9,34 @@ import { parseHedString } from '../../parser/parser'
 import ParsedHedString from '../../parser/parsedHedString'
 import { BidsFile } from './file'
 import BidsHedSidecarValidator from '../validator/sidecarValidator'
-import { IssueError, updateIssueParameters } from '../../issues/issues'
+import { IssueError, addIssueParameters, type Issue } from '../../issues/issues'
 import { DefinitionManager, Definition } from '../../parser/definitionManager'
+import { type HedSchemas } from '../../schema/containers'
+import { type ParsedHedColumnSplice } from '../../parser/parsedHedColumnSplice'
 
 const ILLEGAL_SIDECAR_KEYS = new Set(['hed', 'n/a'])
 
+type BidsSidecarHedEntry = { HED: unknown }
+
 /**
  * A BIDS JSON file.
  */
 export class BidsJsonFile extends BidsFile {
   /**
    * This file's JSON data.
-   * @type {Object}
    */
-  jsonData
+  public readonly jsonData: Record<string, unknown>
 
   /**
    * Constructor for a BIDS JSON file.
    *
    * Note: This class is used for non-sidecars such as dataset_description.json and does not have a validation method.
    *
-   * @param {string} name The name of the JSON file.
-   * @param {Object} file The file object representing this file.
-   * @param {Object} jsonData The JSON data for this file.
+   * @param name The name of the JSON file.
+   * @param file The file object representing this file.
+   * @param jsonData The JSON data for this file.
    */
-  constructor(name, file, jsonData) {
+  public constructor(name: string, file: object, jsonData: Record<string, unknown>) {
     super(name, file, BidsHedSidecarValidator)
     this.jsonData = jsonData
   }
@@ -51,62 +54,59 @@ export class BidsJsonFile extends BidsFile {
  */
 export class BidsSidecar extends BidsJsonFile {
   /**
-   * The extracted keys for this sidecar (string --> BidsSidecarKey)
-   * @type {Map}
+   * The extracted keys for this sidecar.
    */
-  sidecarKeys
+  sidecarKeys: Map<string, BidsSidecarKey>
 
   /**
-   * The extracted HED data for this sidecar (string --> string | Object: string, string
-   * @type {Map}
+   * The extracted HED data for this sidecar.
    */
-  hedData
+  hedData: Map<string, string | Map<string, string>>
 
   /**
-   * The parsed HED data for this sidecar (string --> ParsedHedString | Map: string --> ParsedHedString).
-   * @type {Map}
+   * The parsed HED data for this sidecar.
    */
-  parsedHedData
+  parsedHedData: Map<string, ParsedHedString | Map<string, ParsedHedString>>
 
   /**
    * The extracted HED value strings.
-   * @type {string[]}
    */
-  hedValueStrings
+  hedValueStrings: string[]
 
   /**
    * The extracted HED categorical strings.
-   * @type {string[]}
    */
-  hedCategoricalStrings
+  hedCategoricalStrings: string[]
 
   /**
-   * The mapping of column splice references (string --> Set of string).
-   * @type {Map}
+   * The mapping of column splice references.
    */
-  columnSpliceMapping
+  columnSpliceMapping: Map<string, Set<string>>
 
   /**
    * The set of column splice references.
-   * @type {Set<string>}
    */
-  columnSpliceReferences
+  columnSpliceReferences: Set<string>
 
   /**
    * The object that manages definitions.
-   * @type {DefinitionManager}
    */
-  definitions
+  definitions: DefinitionManager
 
   /**
    * Constructor for a BIDS sidecar. Used for files like events.json, participants.json, etc.
    *
-   * @param {string} name The name of the sidecar file.
-   * @param {Object} file The file object representing this file.
-   * @param {Object} sidecarData The raw JSON data.
-   * @param {DefinitionManager} defManager The external definitions to use.
-   */
-  constructor(name, file, sidecarData = {}, defManager = null) {
+   * @param name The name of the sidecar file.
+   * @param file The file object representing this file.
+   * @param sidecarData The raw JSON data.
+   * @param defManager The external definitions to use.
+   */
+  public constructor(
+    name: string,
+    file: object,
+    sidecarData: Record<string, unknown> = {},
+    defManager: DefinitionManager | null = null,
+  ) {
     super(name, file, sidecarData)
     this.columnSpliceMapping = new Map()
     this.columnSpliceReferences = new Set()
@@ -120,7 +120,7 @@ export class BidsSidecar extends BidsJsonFile {
    *
    * @returns {boolean}
    */
-  get hasHedData() {
+  public get hasHedData(): boolean {
     return this.sidecarKeys.size > 0
   }
 
@@ -131,11 +131,11 @@ export class BidsSidecar extends BidsJsonFile {
    *
    * The parsed strings are placed into {@link parsedHedData}.
    *
-   * @param {Schemas} hedSchemas - The HED schema collection.
-   * @param {boolean} fullValidation - True if full validation should be performed.
-   * @returns {Array} [Issue[], Issue[]] Any errors and warnings found
+   * @param hedSchemas The HED schema collection.
+   * @param fullValidation True if full validation should be performed.
+   * @returns Any errors and warnings found.
    */
-  parseSidecarKeys(hedSchemas, fullValidation = false) {
+  parseSidecarKeys(hedSchemas: HedSchemas, fullValidation: boolean = false): [Issue[], Issue[]] {
     this.parsedHedData = new Map()
     const errors = []
     const warnings = []
@@ -145,8 +145,8 @@ export class BidsSidecar extends BidsJsonFile {
         fullValidation && !this.columnSpliceReferences.has(name),
       )
       const updateParams = { sidecarKey: name, filePath: this.file?.path }
-      updateIssueParameters(errorIssues, updateParams)
-      updateIssueParameters(warningIssues, updateParams)
+      addIssueParameters(errorIssues, updateParams)
+      addIssueParameters(warningIssues, updateParams)
       errors.push(...errorIssues)
       warnings.push(...warningIssues)
       if (sidecarKey.isValueKey) {
@@ -161,10 +161,9 @@ export class BidsSidecar extends BidsJsonFile {
 
   /**
    * Set the definition manager for this sidecar.
-   * @param defManager
-   * @private
+   * @param defManager The definition manager.
    */
-  _setDefinitions(defManager) {
+  private _setDefinitions(defManager: DefinitionManager | null): void {
     if (defManager instanceof DefinitionManager) {
       this.definitions = defManager
     } else if (defManager == null) {
@@ -179,12 +178,11 @@ export class BidsSidecar extends BidsJsonFile {
 
   /**
    * Create the sidecar key map from the JSON.
-   * @private
    */
-  _filterHedStrings() {
+  private _filterHedStrings(): void {
     this.sidecarKeys = new Map(
       Object.entries(this.jsonData)
-        .map(([key, value]) => {
+        .map(([key, value]): [string, BidsSidecarKey] | null => {
           const trimmedKey = key.trim()
           const lowerKey = trimmedKey.toLowerCase()
           if (ILLEGAL_SIDECAR_KEYS.has(lowerKey)) {
@@ -208,13 +206,12 @@ export class BidsSidecar extends BidsJsonFile {
   /**
    * Verify that a column has no deeply nested "HED" keys.
    *
-   * @param {string} key An object key.
-   * @param {*} value An object value.
-   * @param {string|null} topKey The top-level key, if any.
+   * @param key An object key.
+   * @param value An object value.
+   * @param topKey The top-level key, if any.
    * @throws {IssueError} If an invalid "HED" key is found.
-   * @private
    */
-  _verifyKeyHasNoDeepHed(key, value, topKey = null) {
+  private _verifyKeyHasNoDeepHed(key: string, value: unknown, topKey: string | null = null): void {
     if (key.toUpperCase() === 'HED') {
       IssueError.generateAndThrow('illegalSidecarHedDeepKey', {
         key: topKey,
@@ -233,19 +230,17 @@ export class BidsSidecar extends BidsJsonFile {
   /**
    * Determine whether a sidecar value has HED data.
    *
-   * @param {Object} sidecarValue A BIDS sidecar value.
-   * @returns {boolean} Whether the sidecar value has HED data.
-   * @private
+   * @param sidecarValue A BIDS sidecar value.
+   * @returns Whether the sidecar value has HED data.
    */
-  static _sidecarValueHasHed(sidecarValue) {
+  private static _sidecarValueHasHed(sidecarValue: unknown): sidecarValue is BidsSidecarHedEntry {
     return sidecarValue !== null && typeof sidecarValue === 'object' && 'HED' in sidecarValue
   }
 
   /**
    * Categorize the column strings into value strings and categorical strings
-   * @private
    */
-  _categorizeHedStrings() {
+  private _categorizeHedStrings(): void {
     this.hedValueStrings = []
     this.hedCategoricalStrings = []
     this.hedData = new Map()
@@ -262,10 +257,8 @@ export class BidsSidecar extends BidsJsonFile {
 
   /**
    * Generate a mapping of an individual BIDS sidecar's curly brace references.
-   *
-   * @private
    */
-  _generateSidecarColumnSpliceMap() {
+  private _generateSidecarColumnSpliceMap(): void {
     this.columnSpliceMapping = new Map()
     this.columnSpliceReferences = new Set()
 
@@ -282,11 +275,10 @@ export class BidsSidecar extends BidsJsonFile {
 
   /**
    *
-   * @param {BidsSidecarKey} sidecarKey - The column to be checked for column splices.
-   * @param {ParsedHedString} hedData - The parsed HED string to check for column splices.
-   * @private
+   * @param sidecarKey The column to be checked for column splices.
+   * @param hedData The parsed HED string to check for column splices.
    */
-  _parseValueSplice(sidecarKey, hedData) {
+  private _parseValueSplice(sidecarKey: string, hedData: ParsedHedString): void {
     if (hedData.columnSplices.length > 0) {
       const keyReferences = this._processColumnSplices(new Set(), hedData.columnSplices)
       this.columnSpliceMapping.set(sidecarKey, keyReferences)
@@ -295,11 +287,10 @@ export class BidsSidecar extends BidsJsonFile {
 
   /**
    *
-   * @param {BidsSidecarKey} sidecarKey - The column to be checked for column splices.
-   * @param {Map<string, ParsedHedString>} hedData - A Map with columnValue --> parsed HED string for a sidecar key to check for column splices.
-   * @private
+   * @param sidecarKey The column to be checked for column splices.
+   * @param hedData A Map with columnValue --> parsed HED string for a sidecar key to check for column splices.
    */
-  _parseCategorySplice(sidecarKey, hedData) {
+  private _parseCategorySplice(sidecarKey: string, hedData: Map<string, ParsedHedString>): void {
     let keyReferences = null
     for (const valueString of hedData.values()) {
       if (valueString?.columnSplices.length > 0) {
@@ -313,12 +304,15 @@ export class BidsSidecar extends BidsJsonFile {
 
   /**
    * Add a list of columnSplices to a key set.
-   * @param {Set<string>|null} keyReferences
-   * @param {ParsedHedColumnSplice[]} columnSplices
-   * @returns {Set<string>}
-   * @private
-   */
-  _processColumnSplices(keyReferences, columnSplices) {
+   *
+   * @param keyReferences
+   * @param columnSplices
+   * @returns
+   */
+  private _processColumnSplices(
+    keyReferences: Set<string> | null,
+    columnSplices: ParsedHedColumnSplice[],
+  ): Set<string> {
     keyReferences ??= new Set()
     for (const columnSplice of columnSplices) {
       keyReferences.add(columnSplice.originalTag)
@@ -331,54 +325,47 @@ export class BidsSidecar extends BidsJsonFile {
 export class BidsSidecarKey {
   /**
    * The name of this key -- usually corresponds to a column name in a TSV file.
-   * @type {string}
    */
-  name
+  readonly name: string
 
   /**
    * The unparsed category mapping.
-   * @type {Map<string, string>}
    */
-  categoryMap
+  readonly categoryMap: Map<string, string>
 
   /**
    * The parsed category mapping.
-   * @type {Map<string, ParsedHedString>}
    */
-  parsedCategoryMap
+  parsedCategoryMap: Map<string, ParsedHedString>
 
   /**
    * The unparsed value string.
-   * @type {string}
    */
-  valueString
+  readonly valueString: string
 
   /**
    * The parsed value string.
-   * @type {ParsedHedString}
    */
-  parsedValueString
+  parsedValueString: ParsedHedString
 
   /**
    * Weak reference to the sidecar.
-   * @type {BidsSidecar}
    */
-  sidecar
+  readonly sidecar: BidsSidecar
 
   /**
    * Indication of whether this key is for definitions.
-   * @type {Boolean}
    */
-  hasDefinitions
+  hasDefinitions: boolean
 
   /**
    * Constructor for BidsSidecarKey.
    *
-   * @param {string} key The name of this key.
-   * @param {string|Object<string, string>} data The data for this key.
-   * @param {BidsSidecar} sidecar The parent sidecar.
+   * @param key The name of this key.
+   * @param data The data for this key.
+   * @param sidecar The parent sidecar.
    */
-  constructor(key, data, sidecar) {
+  public constructor(key: string, data: unknown, sidecar: BidsSidecar) {
     this.name = key
     this.hasDefinitions = false // May reset to true when definitions for this key are checked
     this.sidecar = sidecar
@@ -396,11 +383,11 @@ export class BidsSidecarKey {
    *
    * ###Note: This sets the parsedHedData as a side effect.
    *
-   * @param {Schemas} hedSchemas The HED schema collection.
-   * @param {boolean} fullValidation True if full validation should be performed.
-   * @returns {Array} - [Issue[], Issues[]] Errors and warnings that result from parsing.
+   * @param hedSchemas The HED schema collection.
+   * @param fullValidation True if full validation should be performed.
+   * @returns Errors and warnings that result from parsing.
    */
-  parseHed(hedSchemas, fullValidation = false) {
+  public parseHed(hedSchemas: HedSchemas, fullValidation: boolean = false): [Issue[], Issue[]] {
     if (this.isValueKey) {
       return this._parseValueString(hedSchemas, fullValidation)
     }
@@ -413,12 +400,11 @@ export class BidsSidecarKey {
    * ### Note:
    *  The value strings cannot contain definitions.
    *
-   * @param {Schemas} hedSchemas - The HED schemas to use.
-   * @param {boolean} fullValidation - True if full validation should be performed.
-   * @returns {Array} - [Issue[], Issue[]] - Errors due for the value.
-   * @private
+   * @param hedSchemas The HED schemas to use.
+   * @param fullValidation True if full validation should be performed.
+   * @returns Errors due for the value.
    */
-  _parseValueString(hedSchemas, fullValidation) {
+  private _parseValueString(hedSchemas: HedSchemas, fullValidation: boolean): [Issue[], Issue[]] {
     const [parsedString, errorIssues, warningIssues] = parseHedString(
       this.valueString,
       hedSchemas,
@@ -432,12 +418,11 @@ export class BidsSidecarKey {
 
   /**
    * Parse the categorical values associated with this key.
-   * @param {Schemas} hedSchemas - The HED schemas used to check against.
-   * @param {boolean} fullValidation - True if full validation should be performed.
-   * @returns {Array} - Array[Issue[], Issue[]] A list of error issues and warning issues.
-   * @private
+   * @param hedSchemas The HED schemas used to check against.
+   * @param fullValidation True if full validation should be performed.
+   * @returns A list of error issues and warning issues.
    */
-  _parseCategory(hedSchemas, fullValidation) {
+  private _parseCategory(hedSchemas: HedSchemas, fullValidation: boolean): [Issue[], Issue[]] {
     this.parsedCategoryMap = new Map()
     const errors = []
     const warnings = []
@@ -469,11 +454,10 @@ export class BidsSidecarKey {
 
   /**
    * Check for definitions in the HED string.
-   * @param {ParsedHedString} parsedString - The string to check for definitions.
-   * @returns {Issue[]} - Errors that occur.
-   * @private
+   * @param parsedString The string to check for definitions.
+   * @returns Errors that occur.
    */
-  _checkDefinitions(parsedString) {
+  private _checkDefinitions(parsedString: ParsedHedString): Issue[] {
     const errors = []
     for (const group of parsedString.tagGroups) {
       if (!group.isDefinitionGroup) {
@@ -492,9 +476,8 @@ export class BidsSidecarKey {
 
   /**
    * Whether this key is a value key.
-   * @returns {boolean}
    */
-  get isValueKey() {
+  public get isValueKey(): boolean {
     return Boolean(this.valueString)
   }
 }
diff --git a/src/bids/types/tsv.js b/src/bids/types/tsv.js
deleted file mode 100644
index 89ac1a6e..00000000
--- a/src/bids/types/tsv.js
+++ /dev/null
@@ -1,164 +0,0 @@
-/**
- * This module contains classes for representing BIDS TSV files and their components.
- *
- * @module bids/types/tsv
- */
-import isPlainObject from 'lodash/isPlainObject'
-
-import { BidsFile } from './file'
-import { convertParsedTSVData, parseTSV } from '../tsvParser'
-import { BidsSidecar } from './json'
-import BidsHedTsvValidator from '../validator/tsvValidator'
-import { IssueError } from '../../issues/issues'
-
-/**
- * A BIDS TSV file.
- */
-export class BidsTsvFile extends BidsFile {
-  /**
-   * This file's parsed TSV data.
-   * @type {Map<string, string[]>}
-   */
-  parsedTsv
-
-  /**
-   * HED strings in the "HED" column of the TSV data.
-   * @type {string[]}
-   */
-  hedColumnHedStrings
-
-  /**
-   * The pseudo-sidecar object representing the merged sidecar data.
-   * @type {BidsSidecar}
-   */
-  mergedSidecar
-
-  constructor(name, file, tsvData, mergedDictionary = {}, defManager = null) {
-    super(name, file, BidsHedTsvValidator)
-
-    if (typeof tsvData === 'string') {
-      this.parsedTsv = parseTSV(tsvData)
-    } else if (tsvData instanceof Map) {
-      this.parsedTsv = new Map(tsvData)
-    } else if (isPlainObject(tsvData)) {
-      this.parsedTsv = convertParsedTSVData(tsvData)
-    } else {
-      const msg = 'The tsvData was not a string, Map or plain object, so a BidsTsvFile could not be created.'
-      IssueError.generateAndThrow('internalError', { message: msg, filePath: file.path })
-    }
-
-    this.mergedSidecar = new BidsSidecar(name, this.file, mergedDictionary, defManager)
-    this._parseHedColumn()
-  }
-
-  /**
-   * Parse the HED column from the TSV data.
-   * @private
-   */
-  _parseHedColumn() {
-    const hedColumn = this.parsedTsv.get('HED')
-    if (hedColumn === undefined) {
-      this.hedColumnHedStrings = []
-    } else {
-      this.hedColumnHedStrings = hedColumn.map((hedCell) => (hedCell && hedCell !== 'n/a' ? hedCell : ''))
-    }
-  }
-
-  /**
-   * Determine whether this file has any HED data.
-   *
-   * @returns {boolean}
-   */
-  get hasHedData() {
-    return this.parsedTsv.has('HED') || this.mergedSidecar.hasHedData
-  }
-
-  /**
-   * Whether this TSV file is a timeline file.
-   *
-   * @returns {boolean}
-   */
-  get isTimelineFile() {
-    return this.parsedTsv.has('onset')
-  }
-}
-
-/**
- * An element in a BIDS TSV file.
- */
-export class BidsTsvElement {
-  /**
-   * The string representation of this row
-   * @type {string}
-   */
-  hedString
-
-  /**
-   * The ParsedHedString representation of this row
-   * @type {import('../../parser/parsedHedString.js').ParsedHedString}
-   */
-  parsedHedString
-
-  /**
-   * The file this row belongs to (usually just the path).
-   * @type {Object}
-   */
-  file
-
-  /**
-   * The onset represented by this row or a NaN.
-   * @type {Number}
-   */
-  onset
-
-  /**
-   * The line number(s) (including the header) represented by this row.
-   * @type {string}
-   */
-  tsvLine
-
-  constructor(hedString, tsvFile, onset, tsvLine) {
-    this.hedString = hedString
-    this.parsedHedString = null
-    this.file = tsvFile.file
-    this.fileName = tsvFile.name
-    this.onset = onset
-    this.tsvLine = tsvLine
-  }
-
-  /**
-   * Override of {@link https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Object/toString | Object.prototype.toString}.
-   *
-   * @returns {string} The string representation of this element.
-   */
-  toString() {
-    const onsetString = this.onset ? ` with onset=${this.onset.toString()}` : ''
-    return this.hedString + ` in TSV file "${this.fileName}" at line(s) ${this.tsvLine}` + onsetString
-  }
-
-  /**
-   * Create a string list of a list of BidsTsvElement objects.
-   * @param {BidsTsvElement[]} elements - A list of elements to construct line numbers from.
-   * @returns {string} - A string with the list of line numbers for error messages.
-   */
-  static getTsvLines(elements) {
-    return elements.map((element) => element.tsvLine).join(',')
-  }
-}
-
-/**
- * A row in a BIDS TSV file.
- */
-export class BidsTsvRow extends BidsTsvElement {
-  /**
-   * The map of column name to value for this row.
-   * @type {Map<string, string>}
-   */
-  rowCells
-
-  constructor(hedString, tsvFile, tsvLine, rowCells) {
-    const onset = rowCells.has('onset') ? rowCells.get('onset') : undefined
-    super(hedString, tsvFile, onset, tsvLine.toString())
-    this.rowCells = rowCells
-  }
-}
diff --git a/src/bids/types/tsv.ts b/src/bids/types/tsv.ts
new file mode 100644
index 00000000..ffc02ec0
--- /dev/null
+++ b/src/bids/types/tsv.ts
@@ -0,0 +1,207 @@
+/**
+ * This module contains classes for representing BIDS TSV files and their components.
+ *
+ * @module bids/types/tsv
+ */
+import isPlainObject from 'lodash/isPlainObject'
+
+import { BidsFile } from './file'
+import { convertParsedTSVData, parseTSV, type OldParsedTSV, type ParsedTSV } from '../tsvParser'
+import { BidsSidecar } from './json'
+import BidsHedTsvValidator from '../validator/tsvValidator'
+import { IssueError } from '../../issues/issues'
+import { type DefinitionManager } from '../../parser/definitionManager'
+import type ParsedHedString from '../../parser/parsedHedString'
+
+/**
+ * A BIDS TSV file.
+ */
+export class BidsTsvFile extends BidsFile {
+  /**
+   * This file's parsed TSV data.
+   */
+  public readonly parsedTsv: ParsedTSV
+
+  /**
+   * HED strings in the "HED" column of the TSV data.
+   */
+  public readonly hedColumnHedStrings: string[]
+
+  /**
+   * The pseudo-sidecar object representing the merged sidecar data.
+   */
+  public readonly mergedSidecar: BidsSidecar
+
+  /**
+   * Constructor.
+   *
+   * @param name The name of this file.
+   * @param file The Object representing this file data.
+   * @param tsvData This file's TSV data.
+   * @param mergedDictionary This file's merged JSON dictionary.
+   * @param defManager This file's definition manager.
+   */
+  constructor(
+    name: string,
+    file: any,
+    tsvData: string | ParsedTSV | OldParsedTSV,
+    mergedDictionary: Record<string, any> = {},
+    defManager: DefinitionManager = null,
+  ) {
+    super(name, file, BidsHedTsvValidator)
+
+    this.parsedTsv = this._parseTsv(tsvData, file)
+    this.hedColumnHedStrings = this._parseHedColumn()
+    this.mergedSidecar = new BidsSidecar(name, this.file, mergedDictionary, defManager)
+  }
+
+  /**
+   * Parse the TSV file.
+   *
+   * @param tsvData This file's TSV data.
+   * @param file The Object representing this file data.
+   * @returns The parsed TSV data.
+   */
+  private _parseTsv(tsvData: string | ParsedTSV | OldParsedTSV, file: any): ParsedTSV {
+    if (typeof tsvData === 'string') {
+      return parseTSV(tsvData)
+    } else if (tsvData instanceof Map) {
+      return new Map(tsvData)
+    } else if (isPlainObject(tsvData)) {
+      return convertParsedTSVData(tsvData)
+    } else {
+      const msg = 'The tsvData was not a string, Map or plain object, so a BidsTsvFile could not be created.'
+      IssueError.generateAndThrow('internalError', { message: msg, filePath: file.path })
+    }
+  }
+
+  /**
+   * Parse the HED column from the TSV data.
+   *
+   * @returns The parsed HED column.
+   */
+  private _parseHedColumn(): string[] {
+    const hedColumn = this.parsedTsv.get('HED')
+    if (hedColumn === undefined) {
+      return []
+    } else {
+      return hedColumn.map((hedCell) => (hedCell && hedCell !== 'n/a' ? hedCell : ''))
+    }
+  }
+
+  /**
+   * Determine whether this file has any HED data.
+   *
+   * @returns Whether this file has any HED data.
+   */
+  public get hasHedData(): boolean {
+    return this.parsedTsv.has('HED') || this.mergedSidecar.hasHedData
+  }
+
+  /**
+   * Whether this TSV file is a timeline file.
+   *
+   * @returns Whether this TSV file is a timeline file.
+   */
+  public get isTimelineFile(): boolean {
+    return this.parsedTsv.has('onset')
+  }
+}
+
+/**
+ * An element in a BIDS TSV file.
+ */
+export class BidsTsvElement {
+  /**
+   * The string representation of this element.
+   */
+  public readonly hedString: string
+
+  /**
+   * The ParsedHedString representation of this element.
+   */
+  public parsedHedString: ParsedHedString | null
+
+  /**
+   * The file this element belongs to (usually just the path).
+   */
+  public readonly file: any
+
+  /**
+   * The name of the file this element belongs to (usually just the path).
+   */
+  public readonly fileName: string
+
+  /**
+   * The onset represented by this element or a NaN.
+   *
+   * @todo This probably should be a number. Move numeric conversion to this file?
+   */
+  public readonly onset: string
+
+  /**
+   * The line number(s) (including the header) represented by this element.
+   */
+  public readonly tsvLine: string
+
+  /**
+   * Constructor.
+   *
+   * @param hedString The string representation of this element.
+   * @param tsvFile The file this element belongs to (usually just the path).
+   * @param onset The onset represented by this element or a NaN.
+   * @param tsvLine The line number(s) (including the header) represented by this element.
+   */
+  constructor(hedString: string, tsvFile: BidsTsvFile, onset: string, tsvLine: string) {
+    this.hedString = hedString
+    this.parsedHedString = null
+    this.file = tsvFile.file
+    this.fileName = tsvFile.name
+    this.onset = onset
+    this.tsvLine = tsvLine
+  }
+
+  /**
+   * Override of {@link https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Object/toString | Object.prototype.toString}.
+   *
+   * @returns The string representation of this element.
+   */
+  public toString(): string {
+    const onsetString = this.onset ? ` with onset=${this.onset}` : ''
+    return this.hedString + ` in TSV file "${this.fileName}" at line(s) ${this.tsvLine}` + onsetString
+  }
+
+  /**
+   * Create a string list of a list of BidsTsvElement objects.
+   *
+   * @param elements A list of elements to construct line numbers from.
+   * @returns A string with the list of line numbers for error messages.
+   */
+  public static getTsvLines(elements: BidsTsvElement[]): string {
+    return elements.map((element) => element.tsvLine).join(',')
+  }
+}
+
+/**
+ * A row in a BIDS TSV file.
+ */
+export class BidsTsvRow extends BidsTsvElement {
+  /**
+   * The map of column name to value for this row.
+   */
+  public readonly rowCells: Map<string, string>
+
+  /**
+   * Constructor.
+   *
+   * @param hedString The string representation of this row.
+   * @param tsvFile The file this row belongs to (usually just the path).
+   * @param tsvLine The line number (including the header) represented by this row.
+   * @param rowCells The map of column name to value for this row.
+   */
+  constructor(hedString: string, tsvFile: BidsTsvFile, tsvLine: number, rowCells: Map<string, string>) {
+    const onset = rowCells.get('onset') ?? ''
+    super(hedString, tsvFile, onset, tsvLine.toString())
+    this.rowCells = rowCells
+  }
+}
diff --git a/src/bids/validator/sidecarValidator.js b/src/bids/validator/sidecarValidator.ts
similarity index 72%
rename from src/bids/validator/sidecarValidator.js
rename to src/bids/validator/sidecarValidator.ts
index 25a7f393..12efda69 100644
--- a/src/bids/validator/sidecarValidator.js
+++ b/src/bids/validator/sidecarValidator.ts
@@ -2,11 +2,13 @@
  * @module bids/validator/sidecarValidator
  */
 
+import { BidsValidator } from './validator'
 import { BidsHedIssue } from '../types/issues'
+import { type BidsSidecar } from '../types/json'
 import ParsedHedString from '../../parser/parsedHedString'
-import { generateIssue, IssueError, updateIssueParameters } from '../../issues/issues'
-import { getCharacterCount } from '../../utils/string.js'
-import { BidsValidator } from './validator'
+import { generateIssue, IssueError } from '../../issues/issues'
+import { type HedSchemas } from '../../schema/containers'
+import { getCharacterCount } from '../../utils/string'
 
 /**
  * Validator for HED data in BIDS JSON sidecars.
@@ -14,26 +16,24 @@ import { BidsValidator } from './validator'
 export class BidsHedSidecarValidator extends BidsValidator {
   /**
    * The BIDS sidecar being validated.
-   * @type {BidsSidecar}
    */
-  sidecar
+  private readonly sidecar: BidsSidecar
 
   /**
    * Constructor for the BidsHedSidecarValidator.
    *
-   * @param {BidsSidecar} sidecar - The BIDS sidecar being validated.
-   * @param {Schemas} hedSchemas - The schemas used for the sidecar validation.
+   * @param sidecar The BIDS sidecar being validated.
+   * @param hedSchemas The schemas used for the sidecar validation.
    */
-  constructor(sidecar, hedSchemas) {
+  public constructor(sidecar: BidsSidecar, hedSchemas: HedSchemas) {
     super(hedSchemas)
     this.sidecar = sidecar
   }
 
   /**
    * Validate a BIDS JSON sidecar file. Errors and warnings are stored.
-   *
    */
-  validate() {
+  public validate(): void {
     // Allow schema to be set a validation time -- this is checked by the superclass of BIDS file
     const [errorIssues, warningIssues] = this.sidecar.parseSidecarKeys(this.hedSchemas, false)
     this.errors.push(...BidsHedIssue.fromHedIssues(errorIssues, this.sidecar.file))
@@ -56,10 +56,10 @@ export class BidsHedSidecarValidator extends BidsValidator {
   /**
    * Validate this sidecar's HED strings.
    *
-   * @returns {BidsHedIssue[]} All issues found.
+   * @returns All issues found.
    */
-  _validateStrings() {
-    const issues = []
+  private _validateStrings(): BidsHedIssue[] {
+    const issues: BidsHedIssue[] = []
 
     for (const [sidecarKeyName, hedData] of this.sidecar.parsedHedData) {
       if (hedData instanceof ParsedHedString) {
@@ -83,28 +83,26 @@ export class BidsHedSidecarValidator extends BidsValidator {
   /**
    * Check definitions and placeholders for a string associated with a sidecar key.
    *
-   * @param {string} sidecarKeyName - The name of the sidecar key associated with string to be checked.
-   * @param {ParsedHedString} hedString - The parsed string to be checked.
-   * @returns {BidsHedIssue[]} - Issues associated with the check.
-   * @private
+   * @param sidecarKeyName The name of the sidecar key associated with string to be checked.
+   * @param hedString The parsed string to be checked.
+   * @returns Issues associated with the check.
    */
-  _checkDetails(sidecarKeyName, hedString) {
+  private _checkDetails(sidecarKeyName: string, hedString: ParsedHedString): BidsHedIssue[] {
     const issues = this._checkDefs(sidecarKeyName, hedString, true)
     issues.push(...this._checkPlaceholders(sidecarKeyName, hedString))
-    updateIssueParameters(issues, { sidecarKey: sidecarKeyName, filePath: this.sidecar?.file?.path })
+    BidsHedIssue.addIssueParameters(issues, { sidecarKey: sidecarKeyName, filePath: this.sidecar?.file?.path })
     return issues
   }
 
   /**
    * Validate the Def and Def-expand usage against the sidecar definitions.
    *
-   * @param {string} sidecarKeyName - Name of the sidecar key for this HED string
-   * @param {ParsedHedString} hedString - The parsed HED string object associated with this key.
-   * @param {boolean} placeholdersAllowed - If true, placeholders are allowed here.
-   * @returns {BidsHedIssue[]} - Issues encountered such as missing definitions or improper Def-expand values.
-   * @private
+   * @param sidecarKeyName Name of the sidecar key for this HED string
+   * @param hedString The parsed HED string object associated with this key.
+   * @param placeholdersAllowed If true, placeholders are allowed here.
+   * @returns Issues encountered such as missing definitions or improper Def-expand values.
    */
-  _checkDefs(sidecarKeyName, hedString, placeholdersAllowed) {
+  private _checkDefs(sidecarKeyName: string, hedString: ParsedHedString, placeholdersAllowed: boolean): BidsHedIssue[] {
     let issues = this.sidecar.definitions.validateDefs(hedString, this.hedSchemas, placeholdersAllowed)
     if (issues.length > 0) {
       return BidsHedIssue.fromHedIssues(issues, this.sidecar.file, { sidecarKey: sidecarKeyName })
@@ -113,7 +111,14 @@ export class BidsHedSidecarValidator extends BidsValidator {
     return BidsHedIssue.fromHedIssues(issues, this.sidecar.file, { sidecarKey: sidecarKeyName })
   }
 
-  _checkPlaceholders(sidecarKeyName, hedString) {
+  /**
+   * Validate the placeholders.
+   *
+   * @param sidecarKeyName Name of the sidecar key for this HED string
+   * @param hedString The parsed HED string object associated with this key.
+   * @returns Issues encountered relating to invalid placeholders.
+   */
+  private _checkPlaceholders(sidecarKeyName: string, hedString: ParsedHedString): BidsHedIssue[] {
     const numberPlaceholders = getCharacterCount(hedString.hedString, '#')
     const sidecarKey = this.sidecar.sidecarKeys.get(sidecarKeyName)
     if (!sidecarKey.valueString && !sidecarKey.hasDefinitions && numberPlaceholders > 0) {
@@ -145,10 +150,10 @@ export class BidsHedSidecarValidator extends BidsValidator {
   /**
    * Validate this sidecar's curly braces -- checking recursion and missing columns.
    *
-   * @returns {BidsHedIssue[]} All issues found.
+   * @returns All issues found.
    */
-  _validateCurlyBraces() {
-    const issues = []
+  private _validateCurlyBraces(): BidsHedIssue[] {
+    const issues: BidsHedIssue[] = []
     const references = this.sidecar.columnSpliceMapping
 
     for (const [key, referredKeys] of references) {
diff --git a/src/bids/validator/tsvValidator.js b/src/bids/validator/tsvValidator.ts
similarity index 76%
rename from src/bids/validator/tsvValidator.js
rename to src/bids/validator/tsvValidator.ts
index 31e5a237..f27d5802 100644
--- a/src/bids/validator/tsvValidator.js
+++ b/src/bids/validator/tsvValidator.ts
@@ -2,7 +2,7 @@
  * @module bids/validator/tsvValidator
  */
 import { BidsHedIssue } from '../types/issues'
-import { BidsTsvElement, BidsTsvRow } from '../types/tsv'
+import { BidsTsvElement, type BidsTsvFile, BidsTsvRow } from '../types/tsv'
 import { BidsValidator } from './validator'
 import { parseHedString, parseStandaloneString } from '../../parser/parser'
 import ParsedHedString from '../../parser/parsedHedString'
@@ -10,6 +10,7 @@ import { generateIssue } from '../../issues/issues'
 import { ReservedChecker } from '../../parser/reservedChecker'
 import { cleanupEmpties, getTagListString } from '../../parser/parseUtils'
 import { EventManager } from '../../parser/eventManager'
+import { type HedSchemas } from '../../schema/containers'
 
 /**
  * Validator for HED data in BIDS TSV files.
@@ -17,32 +18,30 @@ import { EventManager } from '../../parser/eventManager'
 export class BidsHedTsvValidator extends BidsValidator {
   /**
    * The BIDS TSV file being validated.
-   * @type {BidsTsvFile}
    */
-  tsvFile
+  private readonly tsvFile: BidsTsvFile
 
   /**
    * The singleton instance of the checker for reserved requirements.
-   * @type {ReservedChecker}
    */
-  reserved
+  private readonly reserved: ReservedChecker
 
   /**
    * Constructor.
    *
-   * @param {BidsTsvFile} tsvFile - The BIDS TSV file being validated.
-   * @param {Schemas} hedSchemas - The HED schemas used to validate the tsv file.
+   * @param tsvFile The BIDS TSV file being validated.
+   * @param hedSchemas The HED schemas used to validate the tsv file.
    */
-  constructor(tsvFile, hedSchemas) {
+  public constructor(tsvFile: BidsTsvFile, hedSchemas: HedSchemas) {
     super(hedSchemas)
     this.tsvFile = tsvFile
     this.reserved = ReservedChecker.getInstance()
   }
 
   /**
-   * Validate a BIDS TSV file. This method returns the complete issue list for convenience.
+   * Validate a BIDS TSV file.
    */
-  validate() {
+  public validate(): void {
     // Validate the BIDS sidecar if it exists and return if there are errors
     if (this.tsvFile.mergedSidecar) {
       const issues = this.tsvFile.mergedSidecar.validate(this.hedSchemas)
@@ -67,7 +66,7 @@ export class BidsHedTsvValidator extends BidsValidator {
     if (this.errors.length > 0) {
       return
     }
-    this.validateDataset(bidsEvents)
+    this._validateDataset(bidsEvents)
     if (this.errors.length === 0 && this.tsvFile.mergedSidecar?.hasHedData) {
       this._checkMissingHedWarning()
       this._checkMissingValueWarnings()
@@ -76,9 +75,8 @@ export class BidsHedTsvValidator extends BidsValidator {
 
   /**
    * Check for a warning if the HED column is used as a splice but no HED column exists.
-   * @private
    */
-  _checkMissingHedWarning() {
+  private _checkMissingHedWarning(): void {
     // Check for HED column used as splice but no HED column
     if (this.tsvFile.mergedSidecar.columnSpliceReferences.has('HED') && !this.tsvFile.parsedTsv.has('HED')) {
       this.warnings.push(BidsHedIssue.fromHedIssue(generateIssue('hedUsedAsSpliceButNoTsvHed', {}), this.tsvFile.file))
@@ -87,9 +85,8 @@ export class BidsHedTsvValidator extends BidsValidator {
 
   /**
    * Check for categorical column value in tsv but not in sidecar.
-   * @private
    */
-  _checkMissingValueWarnings() {
+  private _checkMissingValueWarnings(): void {
     for (const columnName of this.tsvFile.parsedTsv.keys()) {
       const sidecarColumn = this.tsvFile.mergedSidecar?.sidecarKeys.get(columnName)
       if (!sidecarColumn || sidecarColumn.isValueKey) {
@@ -113,10 +110,8 @@ export class BidsHedTsvValidator extends BidsValidator {
 
   /**
    * Validate this TSV file's HED column.
-   *
-   * @private
    */
-  _validateHedColumn() {
+  private _validateHedColumn(): void {
     if (this.tsvFile.hedColumnHedStrings.length > 0) {
       this.tsvFile.hedColumnHedStrings.flatMap((hedString, rowIndexMinusTwo) =>
         this._validateHedColumnString(hedString, rowIndexMinusTwo + 2),
@@ -127,15 +122,14 @@ export class BidsHedTsvValidator extends BidsValidator {
   /**
    * Validate a string in this TSV file's HED column.
    *
-   * @param {string} hedString - The string to be validated.
-   * @param {number} rowIndex - The index of this row in the TSV file.
-   * @private
+   * @param hedString The string to be validated.
+   * @param rowIndex The index of this row in the TSV file.
    */
-  _validateHedColumnString(hedString, rowIndex) {
+  private _validateHedColumnString(hedString: string, rowIndex: number) {
     if (!hedString) {
       return
     }
-    const [parsedString, errorIssues, warningIssues] = parseStandaloneString(
+    const [, errorIssues, warningIssues] = parseStandaloneString(
       hedString,
       this.hedSchemas,
       this.tsvFile.mergedSidecar.definitions,
@@ -147,8 +141,10 @@ export class BidsHedTsvValidator extends BidsValidator {
 
   /**
    * Validate the HED data in a combined event TSV file/sidecar BIDS data collection.
+   *
+   * @param elements The elements representing the tsv file.
    */
-  validateDataset(elements) {
+  private _validateDataset(elements: BidsTsvElement[]): void {
     // Final top-tag detection cannot be done until the strings are fully assembled and finalized.
     this._checkNoTopTags(elements)
     if (this.errors.length > 0) {
@@ -166,10 +162,9 @@ export class BidsHedTsvValidator extends BidsValidator {
   /**
    * Check the temporal relationships among events.
    *
-   * @param {BidsTsvElement[]} elements - The elements representing the tsv file.
-   * @private
+   * @param elements The elements representing the tsv file.
    */
-  _validateTemporal(elements) {
+  private _validateTemporal(elements: BidsTsvElement[]): void {
     // Check basic temporal conflicts such as Offset before Onset, or temporal tags with same def at same time.
     const eventManager = new EventManager()
     const [eventList, temporalIssues] = eventManager.parseEvents(elements)
@@ -191,11 +186,9 @@ export class BidsHedTsvValidator extends BidsValidator {
    * Duplicate onsets are relatively rare and duplicates for single rows are checked when a ParsedHedString is
    * constructed.
    *
-   * @param {BidsTsvElement[]} elements - The elements representing the tsv file.
-   * @returns {BidsHedIssue[]} - Errors in temporal relationships among events.
-   * @private
+   * @param elements The elements representing the tsv file.
    */
-  _checkDuplicatesAcrossRows(elements) {
+  private _checkDuplicatesAcrossRows(elements: BidsTsvElement[]): void {
     const duplicateMap = this._getOnsetMap(elements)
     for (const elementList of duplicateMap.values()) {
       if (elementList.length === 1) {
@@ -213,11 +206,10 @@ export class BidsHedTsvValidator extends BidsValidator {
   /**
    * Get map of onsets to BidsTsvElements.
    *
-   * @param {BidsTsvElement[]} elements - The elements representing the tsv file.
-   * @returns {Map} - Map of onset value to a list of elements with that onset.
-   * @private
+   * @param elements The elements representing the tsv file.
+   * @returns Map of onset value to a list of elements with that onset.
    */
-  _getOnsetMap(elements) {
+  private _getOnsetMap(elements: BidsTsvElement[]): Map<string, BidsTsvElement[]> {
     const onsetMap = new Map()
     for (const element of elements) {
       if (!element.hedString) {
@@ -235,10 +227,9 @@ export class BidsHedTsvValidator extends BidsValidator {
   /**
    * Top group tag requirements may not be satisfied until all splices have been done.
    *
-   * @param {BidsTsvElement[]} elements - The elements to be checked.
-   * @private
+   * @param elements The elements to be checked.
    */
-  _checkNoTopTags(elements) {
+  private _checkNoTopTags(elements: BidsTsvElement[]): void {
     for (const element of elements) {
       const topTags = element.parsedHedString ? element.parsedHedString.topLevelTags : []
       const badTags = topTags.filter((tag) => ReservedChecker.hasTopLevelTagGroupAttribute(tag))
@@ -257,9 +248,9 @@ export class BidsHedTsvValidator extends BidsValidator {
   /**
    * Verify that this non-temporal file does not contain any temporal tags.
    *
-   * @param {BidsTsvElement[]} elements - The elements representing a tsv file (with HED string parsed).
+   * @param elements The elements representing a tsv file (with HED string parsed).
    */
-  _checkNoTime(elements) {
+  private _checkNoTime(elements: BidsTsvElement[]): void {
     for (const element of elements) {
       if (element.parsedHedString.tags.some((tag) => this.reserved.timelineTags.has(tag.schemaTag.name))) {
         this.errors.push(
@@ -277,28 +268,26 @@ export class BidsHedTsvValidator extends BidsValidator {
  * Class that performs basic parsing and splicing.
  */
 export class BidsHedTsvParser {
-  static nullSet = new Set([null, undefined, '', 'n/a'])
-  static braceRegEx = /\{([^{}]*?)\}/g
+  private static readonly nullSet = new Set([null, undefined, '', 'n/a'])
+  private static readonly braceRegEx = /\{([^{}]*?)\}/g
 
   /**
    * The BIDS TSV file being parsed.
-   * @type {BidsTsvFile}
    */
-  tsvFile
+  private readonly tsvFile: BidsTsvFile
 
   /**
    * The HED schema collection being parsed against.
-   * @type {Schemas}
    */
-  hedSchemas
+  private readonly hedSchemas: HedSchemas
 
   /**
    * Constructor.
    *
-   * @param {BidsTsvFile} tsvFile The BIDS TSV file being parsed.
-   * @param {Schemas} hedSchemas The HED schema collection being parsed against.
+   * @param tsvFile The BIDS TSV file being parsed.
+   * @param hedSchemas The HED schema collection being parsed against.
    */
-  constructor(tsvFile, hedSchemas) {
+  constructor(tsvFile: BidsTsvFile, hedSchemas: HedSchemas) {
     this.tsvFile = tsvFile
     this.hedSchemas = hedSchemas
   }
@@ -306,9 +295,9 @@ export class BidsHedTsvParser {
   /**
    * Combine the BIDS sidecar HED data into a BIDS TSV file's HED data.
    *
-   * @returns {Array} - Returns a two-element array [BidsTsvElement[], BidsHedIssue[], BidsHedIssue[]].
+   * @returns The TSV rows, the list of errors, and the list of warnings.
    */
-  parse() {
+  public parse(): [BidsTsvElement[], BidsHedIssue[], BidsHedIssue[]] {
     const tsvHedRows = this._generateHedRows()
     const tsvElements = this._parseHedRows(tsvHedRows)
     const [errors, warnings] = this._parseElementStrings(tsvElements)
@@ -318,17 +307,17 @@ export class BidsHedTsvParser {
   /**
    * Parse element HED strings.
    *
-   * @param {BidsTsvElement[]} elements - The objects representing tsv rows with their parsed HEd strings.
-   * @returns {Array} -  [BidsHedIssue[], BidsHedIssue[]] The errors and warnings resulting in creating the parsed HED strings.
+   * @param elements The objects representing tsv rows with their parsed HEd strings.
+   * @returns The errors and warnings resulting in creating the parsed HED strings.
    */
-  _parseElementStrings(elements) {
+  private _parseElementStrings(elements: BidsTsvElement[]): [BidsHedIssue[], BidsHedIssue[]] {
     if (elements.length === 0) {
       return [[], []]
     }
 
     // Add the parsed HED strings to the elements and quite if there are serious errors
-    const errors = []
-    const warnings = []
+    const errors: BidsHedIssue[] = []
+    const warnings: BidsHedIssue[] = []
     for (const element of elements) {
       const [parsedHedString, errorIssues, warningIssues] = parseHedString(
         element.hedString,
@@ -347,15 +336,14 @@ export class BidsHedTsvParser {
   /**
    * Generate a list of rows with column-to-value mappings.
    *
-   * @returns {Array} A list of single-row column-to-value mappings.
-   * @private
+   * @returns A list of single-row column-to-value mappings.
    */
-  _generateHedRows() {
+  private _generateHedRows(): Map<string, string>[] {
     const tsvHedColumns = Array.from(this.tsvFile.parsedTsv.entries()).filter(
       ([header]) => this.tsvFile.mergedSidecar.hedData.has(header) || header === 'HED' || header === 'onset',
     )
 
-    const tsvHedRows = []
+    const tsvHedRows: Map<string, string>[] = []
     for (const [header, data] of tsvHedColumns) {
       data.forEach((value, index) => {
         tsvHedRows[index] ??= new Map()
@@ -368,12 +356,11 @@ export class BidsHedTsvParser {
   /**
    * Parse the rows in the TSV file into HED strings.
    *
-   * @param {Map[]} tsvHedRows - A list of single-row column-to-value mappings.
-   * @returns {BidsTsvRow[]} - A list of row-based parsed HED strings.
-   * @private
+   * @param tsvHedRows A list of single-row column-to-value mappings.
+   * @returns A list of row-based parsed HED strings.
    */
-  _parseHedRows(tsvHedRows) {
-    const hedRows = []
+  private _parseHedRows(tsvHedRows: Map<string, string>[]): BidsTsvRow[] {
+    const hedRows: BidsTsvRow[] = []
     tsvHedRows.forEach((row, index) => {
       const hedRow = this._parseHedRow(row, index + 2)
       if (hedRow !== null) {
@@ -386,15 +373,14 @@ export class BidsHedTsvParser {
   /**
    * Parse a row in a TSV file into a BIDS row.
    *
-   * @param {Map} rowCells - The column-to-value mapping for a single row.
-   * @param {number} tsvLine - The index of this row in the TSV file.
-   * @returns {BidsTsvRow} - A parsed HED string.
-   * @private
+   * @param rowCells The column-to-value mapping for a single row.
+   * @param tsvLine The index of this row in the TSV file.
+   * @returns A parsed HED string.
    */
-  _parseHedRow(rowCells, tsvLine) {
-    const hedStringParts = []
+  private _parseHedRow(rowCells: Map<string, string>, tsvLine: number): BidsTsvRow {
+    const hedStringParts: string[] = []
     const columnMap = this._getColumnMapping(rowCells)
-    this.spliceValues(columnMap)
+    this._spliceValues(columnMap)
 
     for (const [columnName, columnValue] of rowCells.entries()) {
       // If a splice, it can't be used in an assembled HED string.
@@ -418,12 +404,11 @@ export class BidsHedTsvParser {
   /**
    * Generate a mapping from tsv columns to strings (may have splices in the strings)
    *
-   * @param {Map} rowCells - The column-to-value mapping for a single row.
-   * @returns {Map} - A mapping of column names to their corresponding parsed sidecar strings.
-   * @private
+   * @param rowCells The column-to-value mapping for a single row.
+   * @returns A mapping of column names to their corresponding parsed sidecar strings.
    */
-  _getColumnMapping(rowCells) {
-    const columnMap = new Map()
+  private _getColumnMapping(rowCells: Map<string, string>): Map<string, string> {
+    const columnMap = new Map<string, string>()
 
     if (rowCells.has('HED')) {
       columnMap.set('HED', rowCells.get('HED'))
@@ -459,14 +444,11 @@ export class BidsHedTsvParser {
   /**
    * Update the map to splice-in the values for columns that have splices.
    *
-   * @param {Map} columnMap - Map of column name to HED string for a row.
+   * @param columnMap Map of column name to HED string for a row.
    *
    * Note: Updates the map in place.
    */
-  spliceValues(columnMap) {
-    if (!(this.tsvFile.mergedSidecar?.columnSpliceMapping?.size > 0)) {
-      return
-    }
+  private _spliceValues(columnMap: Map<string, string>) {
     // Only iterate over the column names that have splices
     for (const column of this.tsvFile.mergedSidecar.columnSpliceMapping.keys()) {
       // if (!columnMap.has(column)) {
@@ -483,12 +465,11 @@ export class BidsHedTsvParser {
   /**
    * Replace a HED string containing slices with a resolved version for the column value in a row.
    *
-   * @param {string} unspliced - A HED string possibly with unresolved splices.
-   * @param {Map} columnMap - The map of column name to HED string for a row.
-   * @returns {string} - The fully resolved HED string with no splices.
-   * @private
+   * @param unspliced A HED string possibly with unresolved splices.
+   * @param columnMap The map of column name to HED string for a row.
+   * @returns The fully resolved HED string with no splices.
    */
-  _replaceSplices(unspliced, columnMap) {
+  private _replaceSplices(unspliced: string, columnMap: Map<string, string>): string {
     const result = unspliced.replace(BidsHedTsvParser.braceRegEx, (match, content) => {
       // Resolve the replacement value
       const resolved = columnMap.has(content) ? columnMap.get(content) : ''
diff --git a/src/bids/validator/validator.js b/src/bids/validator/validator.js
deleted file mode 100644
index 95c4ccae..00000000
--- a/src/bids/validator/validator.js
+++ /dev/null
@@ -1,40 +0,0 @@
-/**
- * Validator base class for HED data in BIDS TSV files.
- * @abstract bids/validator/validator
- */
-export class BidsValidator {
-  /**
-   * The HED schema collection being validated against.
-   * @type {Schemas}
-   */
-  hedSchemas
-
-  /**
-   * The issues found during validation.
-   * @type {BidsHedIssue[]}
-   */
-  errors
-
-  /**
-   * The warnings found during validation.
-   * @type {BidsHedIssue[]}
-   */
-  warnings
-
-  /**
-   * Constructor.
-   *
-   * @param {Schemas} hedSchemas - The HED schemas used for validation.
-   */
-  constructor(hedSchemas) {
-    this.hedSchemas = hedSchemas // Will be set when the file is validated
-    this.errors = []
-    this.warnings = []
-  }
-
-  /**
-   * Validate a BIDS file. Overridden by particular types of BIDS files.
-   * @abstract
-   */
-  validate() {}
-}
diff --git a/src/bids/validator/validator.ts b/src/bids/validator/validator.ts
new file mode 100644
index 00000000..76da58d4
--- /dev/null
+++ b/src/bids/validator/validator.ts
@@ -0,0 +1,43 @@
+/**
+ * Validator base class for HED data in BIDS TSV files.
+ * @module bids/validator/validator
+ */
+
+import { BidsHedIssue } from '../types/issues'
+import { type HedSchemas } from '../../schema/containers'
+
+/**
+ * Validator base class for HED data in BIDS TSV files.
+ */
+export abstract class BidsValidator {
+  /**
+   * The HED schema collection being validated against.
+   */
+  hedSchemas: HedSchemas
+
+  /**
+   * The errors found during validation.
+   */
+  errors: BidsHedIssue[]
+
+  /**
+   * The warnings found during validation.
+   */
+  warnings: BidsHedIssue[]
+
+  /**
+   * Constructor.
+   *
+   * @param hedSchemas The HED schemas used for validation.
+   */
+  protected constructor(hedSchemas: HedSchemas) {
+    this.hedSchemas = hedSchemas
+    this.errors = []
+    this.warnings = []
+  }
+
+  /**
+   * Validate a BIDS file. Overridden by particular types of BIDS files.
+   */
+  public abstract validate(): void
+}
diff --git a/src/issues/data.js b/src/issues/data.js
deleted file mode 100644
index 44a410f1..00000000
--- a/src/issues/data.js
+++ /dev/null
@@ -1,507 +0,0 @@
-/** This module contains the templates for the issues.
- * @module issues/data
- */
-
-import { stringTemplate } from '../utils/string'
-
-export default {
-  // Syntax issues
-  parentheses: {
-    hedCode: 'PARENTHESES_MISMATCH',
-    level: 'error',
-    message: stringTemplate`Number of opening and closing parentheses are unequal. ${'opening'} opening parentheses. ${'closing'} closing parentheses.`,
-  },
-  unopenedParenthesis: {
-    hedCode: 'PARENTHESES_MISMATCH',
-    level: 'error',
-    message: stringTemplate`Closing parenthesis at index ${'index'} of string "${'string'}" does not have a corresponding opening parenthesis.`,
-  },
-  unclosedParenthesis: {
-    hedCode: 'PARENTHESES_MISMATCH',
-    level: 'error',
-    message: stringTemplate`Opening parenthesis at index ${'index'} of string "${'string'}" does not have a corresponding closing parenthesis.`,
-  },
-  commaMissing: {
-    hedCode: 'COMMA_MISSING',
-    level: 'error',
-    message: stringTemplate`Comma missing at position ${'index'} of string "${'string'}". ${'msg'}`,
-  },
-  deprecatedTag: {
-    hedCode: 'ELEMENT_DEPRECATED',
-    level: 'warning',
-    message: stringTemplate`Tags "${'tags'} in "${'string'} are deprecated. Please see tag description for instructions on replacement.".`,
-  },
-  duplicateTag: {
-    hedCode: 'TAG_EXPRESSION_REPEATED',
-    level: 'error',
-    message: stringTemplate`Duplicate tags - "${'tags'} in "${'string'}".`,
-  },
-  extendedTag: {
-    hedCode: 'TAG_EXTENDED',
-    level: 'warning',
-    message: stringTemplate`Tag extensions found for ${'tags'} in "${'string'}".`,
-  },
-  invalidCharacter: {
-    hedCode: 'CHARACTER_INVALID',
-    level: 'error',
-    message: stringTemplate`Invalid character "${'character'}" at index ${'index'} of string "${'string'}".`,
-  },
-  // Common semantic validation issues
-  invalidTag: {
-    hedCode: 'TAG_INVALID',
-    level: 'error',
-    message: stringTemplate`Invalid tag - "${'tag'}". ${'msg'}`,
-  },
-  extraSlash: {
-    hedCode: 'TAG_INVALID',
-    level: 'error',
-    message: stringTemplate`Tag has extra slash at index ${'index'} of string "${'string'}".`,
-  },
-  extraBlank: {
-    hedCode: 'TAG_INVALID',
-    level: 'error',
-    message: stringTemplate`Tag has extra blank at index ${'index'} of string "${'string'}".`,
-  },
-  extraCommaOrInvalid: {
-    hedCode: 'TAG_INVALID',
-    level: 'error',
-    message: stringTemplate`Either "${'previousTag'}" contains a comma when it should not or "${'tag'}" is not a valid tag.`,
-  },
-  invalidTagPrefix: {
-    hedCode: 'TAG_NAMESPACE_PREFIX_INVALID',
-    level: 'error',
-    message: stringTemplate`Either tag prefix at index ${'index'} contains non-alphabetic characters or does not have an associated schema. ${'msg'}`,
-  },
-  multipleUniqueTags: {
-    hedCode: 'TAG_NOT_UNIQUE',
-    level: 'error',
-    message: stringTemplate`Multiple unique "${'tag'}" tags in "${'string'}".`,
-  },
-  childRequired: {
-    hedCode: 'TAG_REQUIRES_CHILD',
-    level: 'error',
-    message: stringTemplate`Descendant tag required - "${'tag'}". ${'msg'}`,
-  },
-  valueRequired: {
-    hedCode: 'TAG_REQUIRES_CHILD',
-    level: 'error',
-    message: stringTemplate`Tag "${'tag'}" requires a value.`,
-  },
-  childForbidden: {
-    hedCode: 'TAG_INVALID',
-    level: 'error',
-    message: stringTemplate`Child tag or value not allowed - "${'tag'}".`,
-  },
-  requiredPrefixMissing: {
-    hedCode: 'REQUIRED_TAG_MISSING',
-    level: 'warning',
-    message: stringTemplate`Tag with prefix "${'tagPrefix'}" is required.`,
-  },
-  unitClassInvalidUnit: {
-    hedCode: 'UNITS_INVALID',
-    level: 'error',
-    message: stringTemplate`Invalid unit - "${'tag'}".`,
-  },
-  invalidValue: {
-    hedCode: 'VALUE_INVALID',
-    level: 'error',
-    message: stringTemplate`Invalid placeholder value for tag "${'tag'}". ${'msg'}`,
-  },
-  invalidPlaceholderContext: {
-    hedCode: 'PLACEHOLDER_INVALID',
-    level: 'error',
-    message: stringTemplate`"${'string'}" has "#" placeholders, which are not allowed in this context.`,
-  },
-  invalidSidecarPlaceholder: {
-    hedCode: 'PLACEHOLDER_INVALID',
-    level: 'error',
-    message: stringTemplate`"${'string'}" of sidecar key "${'sidecarKey'}" has an invalid # placeholder.`,
-  },
-  // HED 3-specific validation issues
-  invalidPlaceholder: {
-    hedCode: 'PLACEHOLDER_INVALID',
-    level: 'error',
-    message: stringTemplate`Invalid # placeholder - "${'tag'}".`,
-  },
-  missingPlaceholder: {
-    hedCode: 'PLACEHOLDER_INVALID',
-    level: 'error',
-    message: stringTemplate`HED value string "${'string'}" is missing a required # placeholder for sidecar key "${'sidecarKey'}".`,
-  },
-  extraPlaceholder: {
-    hedCode: 'PLACEHOLDER_INVALID',
-    level: 'error',
-    message: stringTemplate`HED value string "${'string'}" has too many placeholders in sidecar key "${'sidecarKey'}".`,
-  },
-  invalidPlaceholderInDefinition: {
-    hedCode: 'DEFINITION_INVALID',
-    level: 'error',
-    message: stringTemplate`Invalid placeholder or missing placeholder in definition - "${'definition'}". ${'msg'}`,
-  },
-  invalidDefinition: {
-    hedCode: 'DEFINITION_INVALID',
-    level: 'error',
-    message: stringTemplate`Invalid definition - "${'definition'}". ${'msg'}`,
-  },
-  invalidDefinitionManager: {
-    hedCode: 'DEFINITION_INVALID',
-    level: 'error',
-    message: stringTemplate`Invalid definition manager "${'defManager'}", usually because invalid external definitions were provided to a sidecar or tsv.`,
-  },
-  nestedDefinition: {
-    hedCode: 'DEFINITION_INVALID',
-    level: 'error',
-    message: stringTemplate`Illegal nested definition in tag group for definition "${'definition'}".`,
-  },
-  missingDefinitionForDef: {
-    hedCode: 'DEF_INVALID',
-    level: 'error',
-    message: stringTemplate`Def tag found for definition name "${'definition'}" does not correspond to an existing definition.`,
-  },
-  missingDefinitionForDefExpand: {
-    hedCode: 'DEF_EXPAND_INVALID',
-    level: 'error',
-    message: stringTemplate`Def-expand tag found for definition name "${'definition'}" does not correspond to an existing definition.`,
-  },
-  invalidDefinitionGroupStructure: {
-    hedCode: 'DEFINITION_INVALID',
-    level: 'error',
-    message: stringTemplate`The Definition or Def-expand tag "${'tag'} in "${'tagGroup'}" has multiple top tags or more than one top group.`,
-  },
-  invalidDefinitionForbidden: {
-    hedCode: 'DEFINITION_INVALID',
-    level: 'error',
-    message: stringTemplate`The Definition or Def-expand tag "${'tag'} in "${'tagGroup'}" has other definition-related tags in subgroups.`,
-  },
-  defExpandContentsInvalid: {
-    hedCode: 'DEF_EXPAND_INVALID',
-    level: 'error',
-    message: stringTemplate`Def-expand contents "${'contents'}" disagree with evaluated definition "${'contentsDef'}".`,
-  },
-  duplicateDefinition: {
-    hedCode: 'DEFINITION_INVALID',
-    level: 'error',
-    message: stringTemplate`Definition "${'definition'}" is declared multiple times. This instance's tag group is "${'tagGroup'}".`,
-  },
-  conflictingDefinitions: {
-    hedCode: 'DEFINITION_INVALID',
-    level: 'error',
-    message: stringTemplate`Definition "${'definition1'}" and "${'definition2'}' conflict.`,
-  },
-  duplicateDefinitionNames: {
-    hedCode: 'DEFINITION_INVALID',
-    level: 'error',
-    message: stringTemplate`Definition "${'definition1'}" and "${'definition2'}" have same name but are not equivalent.`,
-  },
-  multipleTagGroupsInDefinition: {
-    hedCode: 'DEFINITION_INVALID',
-    level: 'error',
-    message: stringTemplate`Multiple inner tag groups found in definition "${'definition'}".`,
-  },
-  illegalDefinitionGroupTag: {
-    hedCode: 'DEFINITION_INVALID',
-    level: 'error',
-    message: stringTemplate`Illegal tag "${'tag'}" in tag group for definition "${'definition'}".`,
-  },
-  illegalDefinitionContext: {
-    hedCode: 'DEFINITION_INVALID',
-    level: 'error',
-    message: stringTemplate`Definition "${'definition'}" was found in string "${'string'}" in a context where definitions are not allowed.`,
-  },
-  illegalInExclusiveContext: {
-    hedCode: 'TAG_INVALID',
-    level: 'error',
-    message: stringTemplate`"${'tag'}" can only appear in groups with other definitions but "${'string'}" has other types of groups or tags.`,
-  },
-  inactiveOnset: {
-    hedCode: 'TEMPORAL_TAG_ERROR',
-    level: 'error',
-    message: stringTemplate`${'tag'} found for inactive onset with definition name and value "${'definition'}".`,
-  },
-  temporalWithoutInnerGroup: {
-    hedCode: 'TEMPORAL_TAG_ERROR',
-    level: 'error',
-    message: stringTemplate`${'tag'} found without an included inner top-level tag group. This instance's tag group is "${'tagGroup'}".`,
-  },
-  temporalWithWrongNumberDefs: {
-    hedCode: 'TEMPORAL_TAG_ERROR',
-    level: 'error',
-    message: stringTemplate`${'tag'} found in tag group "${'tagGroup'}" with the wrong number of Def tags and Def-expand groups.`,
-  },
-  temporalWithoutDefinition: {
-    hedCode: 'TEMPORAL_TAG_ERROR',
-    level: 'error',
-    message: stringTemplate`${'tag'} found in tag group "${'tagGroup'}" without an included definition.`,
-  },
-  extraTagsInTemporal: {
-    hedCode: 'TEMPORAL_TAG_ERROR',
-    level: 'error',
-    message: stringTemplate`Extra top-level tags or tag groups found in onset, inset, or offset group "${'tagGroup'}" with definition "${'definition'}".`,
-  },
-  temporalTagInNonTemporalContext: {
-    hedCode: 'TEMPORAL_TAG_ERROR',
-    level: 'error',
-    message: stringTemplate`HED event string "${'string'}" has temporal tags on line(s) [${'tsvline'}] in a tsv file without an onset time.`,
-  },
-  duplicateTemporal: {
-    hedCode: 'TEMPORAL_TAG_ERROR',
-    level: 'error',
-    message: stringTemplate`HED event string "${'string'}" has onset/offset/inset tags with duplicated definition "${'definition'}".`,
-  },
-  multipleTemporalTags: {
-    hedCode: 'TEMPORAL_TAG_ERROR',
-    level: 'error',
-    message: stringTemplate`HED event string "${'string'}" has multiple temporal tags ${'tags'} in the same group.`,
-  },
-  multipleRequiresDefTags: {
-    hedCode: 'TEMPORAL_TAG_ERROR',
-    level: 'error',
-    message: stringTemplate`HED event string "${'string'}" has multiple temporal tags ${'tags'} that require a definition in the same group.`,
-  },
-  simultaneousDuplicateEvents: {
-    hedCode: 'TEMPORAL_TAG_ERROR',
-    level: 'error',
-    message: stringTemplate`Temporal tag group "${'tagGroup1'}" at ${'onset1'} line ${'tsvLine1'} is simultaneous with "${'tagGroup2'}" at ${'onset2'} line ${'tsvLine2'}.`,
-  },
-  missingTagGroup: {
-    hedCode: 'TAG_GROUP_ERROR',
-    level: 'error',
-    message: stringTemplate`Tag(s) "${'tag'}" must appear in a tag group.`,
-  },
-  invalidTagGroup: {
-    hedCode: 'TAG_GROUP_ERROR',
-    level: 'error',
-    message: stringTemplate`"${'tagGroup'}" has invalid group tags or invalid number of subgroups.`,
-  },
-  forbiddenSubgroupTags: {
-    hedCode: 'TAG_GROUP_ERROR',
-    level: 'error',
-    message: stringTemplate`Tag "${'tag'}" in "${'string'}" cannot have tags "${'tagList'}" in a subgroup.`,
-  },
-  invalidTopLevelTagGroupTag: {
-    hedCode: 'TAG_GROUP_ERROR',
-    level: 'error',
-    message: stringTemplate`Tag "${'tag'}" is only allowed inside of a top-level tag group, but is not at top level in "${'string'}".`,
-  },
-  invalidGroupTags: {
-    hedCode: 'TAG_GROUP_ERROR',
-    level: 'error',
-    message: stringTemplate`Tags "${'tags'}" in "${'string'}" cannot be in a subgroups together.`,
-  },
-  invalidGroupTopTags: {
-    hedCode: 'TAG_GROUP_ERROR',
-    level: 'error',
-    message: stringTemplate`Tags "${'tags'}" cannot be at the same level in group "${'string'}".`,
-  },
-  tooManyGroupTopTags: {
-    hedCode: 'TAG_GROUP_ERROR',
-    level: 'error',
-    message: stringTemplate`Group "${'string'}" has too many or too few tags or Def-expand groups at the top level.`,
-  },
-  multipleTopLevelTagGroupTags: {
-    hedCode: 'TAG_GROUP_ERROR',
-    level: 'error',
-    message: stringTemplate`Tag "${'tag'}" found in top-level tag group where "${'otherTag'}" was already defined.`,
-  },
-  invalidNumberOfSubgroups: {
-    hedCode: 'TAG_GROUP_ERROR',
-    level: 'error',
-    message: stringTemplate`The tag "${'tag'} is in a "${'string'} with too many or too few subgroups.`,
-  },
-  invalidTopLevelTag: {
-    hedCode: 'TAG_GROUP_ERROR',
-    level: 'error',
-    message: stringTemplate`Tag(s) "${'tag'}" should be in a top group in "${'string'}".`,
-  },
-  invalidGroupTag: {
-    hedCode: 'TAG_GROUP_ERROR',
-    level: 'error',
-    message: stringTemplate`Tag(s) "${'tag'}" should be in a group in "${'string'}".`,
-  },
-  // Tag conversion issues
-  invalidParentNode: {
-    hedCode: 'TAG_EXTENSION_INVALID',
-    level: 'error',
-    message: stringTemplate`"${'tag'}" does not have "${'parentTag'}" as its parent in the schema. ${'msg'}`,
-  },
-  invalidExtension: {
-    hedCode: 'TAG_EXTENSION_INVALID',
-    level: 'error',
-    message: stringTemplate`"${'tag'}" appears as an extension of "${'parentTag'}". ${'msg'}`,
-  },
-  emptyTagFound: {
-    hedCode: 'TAG_EMPTY',
-    level: 'error',
-    message: stringTemplate`Empty tag at index ${'index'} cannot be converted.`,
-  },
-  invalidTagString: {
-    hedCode: 'TAG_INVALID',
-    level: 'error',
-    message: stringTemplate`Tag string is null or undefined.`,
-  },
-  duplicateTagsInSchema: {
-    hedCode: 'SCHEMA_DUPLICATE_NODE',
-    level: 'error',
-    message: stringTemplate`Source HED schema is invalid as it contains duplicate tags.`,
-  },
-  // Curly brace issues
-  unopenedCurlyBrace: {
-    hedCode: 'SIDECAR_BRACES_INVALID',
-    level: 'error',
-    message: stringTemplate`Closing curly brace at index ${'index'} of string "${'string'}" does not have a corresponding opening curly brace. ${'msg'}`,
-  },
-  unclosedCurlyBrace: {
-    hedCode: 'SIDECAR_BRACES_INVALID',
-    level: 'error',
-    message: stringTemplate`Opening curly brace at index ${'index'} of string "${'string'}" does not have a corresponding closing curly brace. ${'msg'}`,
-  },
-  nestedCurlyBrace: {
-    hedCode: 'SIDECAR_BRACES_INVALID',
-    level: 'error',
-    message: stringTemplate`Opening curly brace at index ${'index'} of string "${'string'}" when curly brace expression is already open.`,
-  },
-  emptyCurlyBrace: {
-    hedCode: 'SIDECAR_BRACES_INVALID',
-    level: 'error',
-    message: stringTemplate`Curly brace expression of string "${'string'}" is empty. ${'msg'}`,
-  },
-  curlyBracesInDefinition: {
-    hedCode: 'DEFINITION_INVALID',
-    level: 'error',
-    message: stringTemplate`Illegal curly brace expression "${'sidecarKey'}" found in HED string containing definition "${'definition'}".`,
-  },
-  curlyBracesInHedColumn: {
-    hedCode: 'CHARACTER_INVALID',
-    level: 'error',
-    message: stringTemplate`Curly brace expression "${'string'}" found in the HED column of a TSV file.`,
-  },
-  curlyBracesNotAllowed: {
-    hedCode: 'CHARACTER_INVALID',
-    level: 'error',
-    message: stringTemplate`Curly brace expression not allowed in "${'string'}".`,
-  },
-  recursiveCurlyBraces: {
-    hedCode: 'SIDECAR_BRACES_INVALID',
-    level: 'error',
-    message: stringTemplate`Sidecar key "${'sidecarKey'}", which has curly braces, is illegally referred to by a string using curly braces.`,
-  },
-  recursiveCurlyBracesWithKey: {
-    hedCode: 'SIDECAR_BRACES_INVALID',
-    level: 'error',
-    message: stringTemplate`Sidecar key "${'sidecarKey'}", which has curly braces, is referred to by sidecar key "${'referrer'}", which also has curly braces.`,
-  },
-  undefinedCurlyBraces: {
-    hedCode: 'SIDECAR_BRACES_INVALID',
-    level: 'error',
-    message: stringTemplate`Sidecar key "${'sidecarKey'}", used in curly braces, is not mapped to a defined column.`,
-  },
-  // Schema issues
-  invalidSchemaSpecification: {
-    hedCode: 'SCHEMA_LOAD_FAILED',
-    level: 'error',
-    message: stringTemplate`The supplied HED schema specification is invalid. Specification: ${'spec'}.`,
-  },
-  missingSchemaSpecification: {
-    hedCode: 'SCHEMA_LOAD_FAILED',
-    level: 'error',
-    message: stringTemplate`No valid HED schema specification was supplied.`,
-  },
-  bundledSchemaLoadFailed: {
-    hedCode: 'SCHEMA_LOAD_FAILED',
-    level: 'error',
-    message: stringTemplate`Could not load HED schema for spec "${'spec'}" from bundled copy - "${'error'}".`,
-  },
-  localSchemaLoadFailed: {
-    hedCode: 'SCHEMA_LOAD_FAILED',
-    level: 'error',
-    message: stringTemplate`Could not load HED schema from path "${'path'}" - "${'error'}".`,
-  },
-  remoteSchemaLoadFailed: {
-    hedCode: 'SCHEMA_LOAD_FAILED',
-    level: 'error',
-    message: stringTemplate`Could not load HED schema "${'spec'}" from remote repository - "${'error'}".`,
-  },
-  unmatchedBaseSchema: {
-    hedCode: 'TAG_NAMESPACE_PREFIX_INVALID',
-    level: 'error',
-    message: stringTemplate`Tag "${'tag'}" is declared to use a base schema in the dataset's schema listing, but no such schema was defined.`,
-  },
-  unmatchedLibrarySchema: {
-    hedCode: 'TAG_NAMESPACE_PREFIX_INVALID',
-    level: 'error',
-    message: stringTemplate`Tag "${'tag'}" is declared to use a library schema nicknamed "${'library'}" in the dataset's schema listing, but no such schema was found.`,
-  },
-  differentWithStandard: {
-    hedCode: 'SCHEMA_LOAD_FAILED',
-    level: 'error',
-    message: stringTemplate`Could not merge lazy partnered schemas with different "withStandard" values: "${'first'}" and "${'second'}".`,
-  },
-  lazyPartneredSchemasShareTag: {
-    hedCode: 'SCHEMA_LOAD_FAILED',
-    level: 'error',
-    message: stringTemplate`Lazy partnered schemas are incompatible because they share the short tag "${'tag'}". These schemas require different prefixes.`,
-  },
-  deprecatedStandardSchemaVersion: {
-    hedCode: 'VERSION_DEPRECATED',
-    level: 'error',
-    message: stringTemplate`HED standard schema version ${'version'} is deprecated. Please upgrade to a newer version.`,
-  },
-  // BIDS issues
-  sidecarKeyMissing: {
-    hedCode: 'SIDECAR_KEY_MISSING',
-    level: 'warning',
-    message: stringTemplate`Values "${'values'}" appear for sidecar key "${'sidecarKey'}" of file "${'file'}", but were not defined in any associated sidecar.`,
-  },
-  hedUsedAsSpliceButNoTsvHed: {
-    hedCode: 'SIDECAR_KEY_MISSING',
-    level: 'warning',
-    message: stringTemplate`Key "{HED}" was referenced in sidecar for file "${'file'}", but this file does not have a HED column.`,
-  },
-  illegalSidecarHedType: {
-    hedCode: 'SIDECAR_INVALID',
-    level: 'error',
-    message: stringTemplate`The HED data for sidecar key "${'sidecarKey'}" of file "${'filePath'}" is not either a key-value dictionary or a string.`,
-  },
-  illegalSidecarHedKey: {
-    hedCode: 'SIDECAR_INVALID',
-    level: 'error',
-    message: stringTemplate`The string 'HED' or 'n/a' was illegally used as a top-level sidecar key.`,
-  },
-  illegalSidecarData: {
-    hedCode: 'SIDECAR_INVALID',
-    level: 'error',
-    message: stringTemplate`The data associated with sidecar key "${'sidecarKey'}" cannot be parsed.`,
-  },
-  illegalSidecarHedCategoricalValue: {
-    hedCode: 'SIDECAR_INVALID',
-    level: 'error',
-    message: stringTemplate`The string 'HED' or 'n/a' was illegally used as a sidecar categorical value for sidecar key "${'sidecarKey'}" in sidecar "${'filePath'}".`,
-  },
-  illegalSidecarHedDeepKey: {
-    hedCode: 'SIDECAR_INVALID',
-    level: 'error',
-    message: stringTemplate`An illegal "HED" appeared as a key below level 2 in a sidecar entry with top-level key "${'sidecarKey'}".`,
-  },
-  // Internal errors
-  internalError: {
-    hedCode: 'INTERNAL_ERROR',
-    level: 'error',
-    message: stringTemplate`Internal error - message: "${'message'}".`,
-  },
-  networkReadError: {
-    hedCode: 'INTERNAL_ERROR',
-    level: 'error',
-    message: stringTemplate`I/O error when reading from network - server responded to URL "${'url'}" with HTTP status code ${'statusCode'} ${'statusText'}.`,
-  },
-  fileReadError: {
-    hedCode: 'INTERNAL_ERROR',
-    level: 'error',
-    message: stringTemplate`I/O error when reading file or directory "${'fileName'}" - message: "${'message'}".`,
-  },
-  genericError: {
-    hedCode: 'INTERNAL_ERROR',
-    level: 'error',
-    message: (parameters) =>
-      `Unknown HED error "${parameters.internalCode}" - parameters: "${JSON.stringify(parameters)}".`,
-  },
-}
diff --git a/src/issues/data.ts b/src/issues/data.ts
new file mode 100644
index 00000000..70ec7a6b
--- /dev/null
+++ b/src/issues/data.ts
@@ -0,0 +1,518 @@
+/**
+ * This module contains the templates for the issues.
+ * @module issues/data
+ */
+
+import { issueMessageTemplate, type IssueMessageTemplateString } from '../utils/string'
+
+export type IssueLevel = 'error' | 'warning'
+
+type IssueType = {
+  hedCode: string
+  level: IssueLevel
+  message: IssueMessageTemplateString
+}
+
+const issueData: Record<string, IssueType> = {
+  // Syntax issues
+  parentheses: {
+    hedCode: 'PARENTHESES_MISMATCH',
+    level: 'error',
+    message: issueMessageTemplate`Number of opening and closing parentheses are unequal. ${'opening'} opening parentheses. ${'closing'} closing parentheses.`,
+  },
+  unopenedParenthesis: {
+    hedCode: 'PARENTHESES_MISMATCH',
+    level: 'error',
+    message: issueMessageTemplate`Closing parenthesis at index ${'index'} of string "${'string'}" does not have a corresponding opening parenthesis.`,
+  },
+  unclosedParenthesis: {
+    hedCode: 'PARENTHESES_MISMATCH',
+    level: 'error',
+    message: issueMessageTemplate`Opening parenthesis at index ${'index'} of string "${'string'}" does not have a corresponding closing parenthesis.`,
+  },
+  commaMissing: {
+    hedCode: 'COMMA_MISSING',
+    level: 'error',
+    message: issueMessageTemplate`Comma missing at position ${'index'} of string "${'string'}". ${'msg'}`,
+  },
+  deprecatedTag: {
+    hedCode: 'ELEMENT_DEPRECATED',
+    level: 'warning',
+    message: issueMessageTemplate`Tags "${'tags'} in "${'string'} are deprecated. Please see tag description for instructions on replacement.".`,
+  },
+  duplicateTag: {
+    hedCode: 'TAG_EXPRESSION_REPEATED',
+    level: 'error',
+    message: issueMessageTemplate`Duplicate tags - "${'tags'} in "${'string'}".`,
+  },
+  extendedTag: {
+    hedCode: 'TAG_EXTENDED',
+    level: 'warning',
+    message: issueMessageTemplate`Tag extensions found for ${'tags'} in "${'string'}".`,
+  },
+  invalidCharacter: {
+    hedCode: 'CHARACTER_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Invalid character "${'character'}" at index ${'index'} of string "${'string'}".`,
+  },
+  // Common semantic validation issues
+  invalidTag: {
+    hedCode: 'TAG_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Invalid tag - "${'tag'}". ${'msg'}`,
+  },
+  extraSlash: {
+    hedCode: 'TAG_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Tag has extra slash at index ${'index'} of string "${'string'}".`,
+  },
+  extraBlank: {
+    hedCode: 'TAG_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Tag has extra blank at index ${'index'} of string "${'string'}".`,
+  },
+  extraCommaOrInvalid: {
+    hedCode: 'TAG_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Either "${'previousTag'}" contains a comma when it should not or "${'tag'}" is not a valid tag.`,
+  },
+  invalidTagPrefix: {
+    hedCode: 'TAG_NAMESPACE_PREFIX_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Either tag prefix at index ${'index'} contains non-alphabetic characters or does not have an associated schema. ${'msg'}`,
+  },
+  multipleUniqueTags: {
+    hedCode: 'TAG_NOT_UNIQUE',
+    level: 'error',
+    message: issueMessageTemplate`Multiple unique "${'tag'}" tags in "${'string'}".`,
+  },
+  childRequired: {
+    hedCode: 'TAG_REQUIRES_CHILD',
+    level: 'error',
+    message: issueMessageTemplate`Descendant tag required - "${'tag'}". ${'msg'}`,
+  },
+  valueRequired: {
+    hedCode: 'TAG_REQUIRES_CHILD',
+    level: 'error',
+    message: issueMessageTemplate`Tag "${'tag'}" requires a value.`,
+  },
+  childForbidden: {
+    hedCode: 'TAG_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Child tag or value not allowed - "${'tag'}".`,
+  },
+  requiredPrefixMissing: {
+    hedCode: 'REQUIRED_TAG_MISSING',
+    level: 'warning',
+    message: issueMessageTemplate`Tag with prefix "${'tagPrefix'}" is required.`,
+  },
+  unitClassInvalidUnit: {
+    hedCode: 'UNITS_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Invalid unit - "${'tag'}".`,
+  },
+  invalidValue: {
+    hedCode: 'VALUE_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Invalid placeholder value for tag "${'tag'}". ${'msg'}`,
+  },
+  invalidPlaceholderContext: {
+    hedCode: 'PLACEHOLDER_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`"${'string'}" has "#" placeholders, which are not allowed in this context.`,
+  },
+  invalidSidecarPlaceholder: {
+    hedCode: 'PLACEHOLDER_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`"${'string'}" of sidecar key "${'sidecarKey'}" has an invalid # placeholder.`,
+  },
+  // HED 3-specific validation issues
+  invalidPlaceholder: {
+    hedCode: 'PLACEHOLDER_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Invalid # placeholder - "${'tag'}".`,
+  },
+  missingPlaceholder: {
+    hedCode: 'PLACEHOLDER_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`HED value string "${'string'}" is missing a required # placeholder for sidecar key "${'sidecarKey'}".`,
+  },
+  extraPlaceholder: {
+    hedCode: 'PLACEHOLDER_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`HED value string "${'string'}" has too many placeholders in sidecar key "${'sidecarKey'}".`,
+  },
+  invalidPlaceholderInDefinition: {
+    hedCode: 'DEFINITION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Invalid placeholder or missing placeholder in definition - "${'definition'}". ${'msg'}`,
+  },
+  invalidDefinition: {
+    hedCode: 'DEFINITION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Invalid definition - "${'definition'}". ${'msg'}`,
+  },
+  invalidDefinitionManager: {
+    hedCode: 'DEFINITION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Invalid definition manager "${'defManager'}", usually because invalid external definitions were provided to a sidecar or tsv.`,
+  },
+  nestedDefinition: {
+    hedCode: 'DEFINITION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Illegal nested definition in tag group for definition "${'definition'}".`,
+  },
+  missingDefinitionForDef: {
+    hedCode: 'DEF_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Def tag found for definition name "${'definition'}" does not correspond to an existing definition.`,
+  },
+  missingDefinitionForDefExpand: {
+    hedCode: 'DEF_EXPAND_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Def-expand tag found for definition name "${'definition'}" does not correspond to an existing definition.`,
+  },
+  invalidDefinitionGroupStructure: {
+    hedCode: 'DEFINITION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`The Definition or Def-expand tag "${'tag'} in "${'tagGroup'}" has multiple top tags or more than one top group.`,
+  },
+  invalidDefinitionForbidden: {
+    hedCode: 'DEFINITION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`The Definition or Def-expand tag "${'tag'} in "${'tagGroup'}" has other definition-related tags in subgroups.`,
+  },
+  defExpandContentsInvalid: {
+    hedCode: 'DEF_EXPAND_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Def-expand contents "${'contents'}" disagree with evaluated definition "${'contentsDef'}".`,
+  },
+  duplicateDefinition: {
+    hedCode: 'DEFINITION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Definition "${'definition'}" is declared multiple times. This instance's tag group is "${'tagGroup'}".`,
+  },
+  conflictingDefinitions: {
+    hedCode: 'DEFINITION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Definition "${'definition1'}" and "${'definition2'}' conflict.`,
+  },
+  duplicateDefinitionNames: {
+    hedCode: 'DEFINITION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Definition "${'definition1'}" and "${'definition2'}" have same name but are not equivalent.`,
+  },
+  multipleTagGroupsInDefinition: {
+    hedCode: 'DEFINITION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Multiple inner tag groups found in definition "${'definition'}".`,
+  },
+  illegalDefinitionGroupTag: {
+    hedCode: 'DEFINITION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Illegal tag "${'tag'}" in tag group for definition "${'definition'}".`,
+  },
+  illegalDefinitionContext: {
+    hedCode: 'DEFINITION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Definition "${'definition'}" was found in string "${'string'}" in a context where definitions are not allowed.`,
+  },
+  illegalInExclusiveContext: {
+    hedCode: 'TAG_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`"${'tag'}" can only appear in groups with other definitions but "${'string'}" has other types of groups or tags.`,
+  },
+  inactiveOnset: {
+    hedCode: 'TEMPORAL_TAG_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`${'tag'} found for inactive onset with definition name and value "${'definition'}".`,
+  },
+  temporalWithoutInnerGroup: {
+    hedCode: 'TEMPORAL_TAG_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`${'tag'} found without an included inner top-level tag group. This instance's tag group is "${'tagGroup'}".`,
+  },
+  temporalWithWrongNumberDefs: {
+    hedCode: 'TEMPORAL_TAG_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`${'tag'} found in tag group "${'tagGroup'}" with the wrong number of Def tags and Def-expand groups.`,
+  },
+  temporalWithoutDefinition: {
+    hedCode: 'TEMPORAL_TAG_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`${'tag'} found in tag group "${'tagGroup'}" without an included definition.`,
+  },
+  extraTagsInTemporal: {
+    hedCode: 'TEMPORAL_TAG_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`Extra top-level tags or tag groups found in onset, inset, or offset group "${'tagGroup'}" with definition "${'definition'}".`,
+  },
+  temporalTagInNonTemporalContext: {
+    hedCode: 'TEMPORAL_TAG_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`HED event string "${'string'}" has temporal tags on line(s) [${'tsvline'}] in a tsv file without an onset time.`,
+  },
+  duplicateTemporal: {
+    hedCode: 'TEMPORAL_TAG_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`HED event string "${'string'}" has onset/offset/inset tags with duplicated definition "${'definition'}".`,
+  },
+  multipleTemporalTags: {
+    hedCode: 'TEMPORAL_TAG_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`HED event string "${'string'}" has multiple temporal tags ${'tags'} in the same group.`,
+  },
+  multipleRequiresDefTags: {
+    hedCode: 'TEMPORAL_TAG_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`HED event string "${'string'}" has multiple temporal tags ${'tags'} that require a definition in the same group.`,
+  },
+  simultaneousDuplicateEvents: {
+    hedCode: 'TEMPORAL_TAG_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`Temporal tag group "${'tagGroup1'}" at ${'onset1'} line ${'tsvLine1'} is simultaneous with "${'tagGroup2'}" at ${'onset2'} line ${'tsvLine2'}.`,
+  },
+  missingTagGroup: {
+    hedCode: 'TAG_GROUP_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`Tag(s) "${'tag'}" must appear in a tag group.`,
+  },
+  invalidTagGroup: {
+    hedCode: 'TAG_GROUP_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`"${'tagGroup'}" has invalid group tags or invalid number of subgroups.`,
+  },
+  forbiddenSubgroupTags: {
+    hedCode: 'TAG_GROUP_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`Tag "${'tag'}" in "${'string'}" cannot have tags "${'tagList'}" in a subgroup.`,
+  },
+  invalidTopLevelTagGroupTag: {
+    hedCode: 'TAG_GROUP_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`Tag "${'tag'}" is only allowed inside of a top-level tag group, but is not at top level in "${'string'}".`,
+  },
+  invalidGroupTags: {
+    hedCode: 'TAG_GROUP_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`Tags "${'tags'}" in "${'string'}" cannot be in a subgroups together.`,
+  },
+  invalidGroupTopTags: {
+    hedCode: 'TAG_GROUP_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`Tags "${'tags'}" cannot be at the same level in group "${'string'}".`,
+  },
+  tooManyGroupTopTags: {
+    hedCode: 'TAG_GROUP_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`Group "${'string'}" has too many or too few tags or Def-expand groups at the top level.`,
+  },
+  multipleTopLevelTagGroupTags: {
+    hedCode: 'TAG_GROUP_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`Tag "${'tag'}" found in top-level tag group where "${'otherTag'}" was already defined.`,
+  },
+  invalidNumberOfSubgroups: {
+    hedCode: 'TAG_GROUP_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`The tag "${'tag'} is in a "${'string'} with too many or too few subgroups.`,
+  },
+  invalidTopLevelTag: {
+    hedCode: 'TAG_GROUP_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`Tag(s) "${'tag'}" should be in a top group in "${'string'}".`,
+  },
+  invalidGroupTag: {
+    hedCode: 'TAG_GROUP_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`Tag(s) "${'tag'}" should be in a group in "${'string'}".`,
+  },
+  // Tag conversion issues
+  invalidParentNode: {
+    hedCode: 'TAG_EXTENSION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`"${'tag'}" does not have "${'parentTag'}" as its parent in the schema. ${'msg'}`,
+  },
+  invalidExtension: {
+    hedCode: 'TAG_EXTENSION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`"${'tag'}" appears as an extension of "${'parentTag'}". ${'msg'}`,
+  },
+  emptyTagFound: {
+    hedCode: 'TAG_EMPTY',
+    level: 'error',
+    message: issueMessageTemplate`Empty tag at index ${'index'} cannot be converted.`,
+  },
+  invalidTagString: {
+    hedCode: 'TAG_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Tag string is null or undefined.`,
+  },
+  duplicateTagsInSchema: {
+    hedCode: 'SCHEMA_DUPLICATE_NODE',
+    level: 'error',
+    message: issueMessageTemplate`Source HED schema is invalid as it contains duplicate tags.`,
+  },
+  // Curly brace issues
+  unopenedCurlyBrace: {
+    hedCode: 'SIDECAR_BRACES_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Closing curly brace at index ${'index'} of string "${'string'}" does not have a corresponding opening curly brace. ${'msg'}`,
+  },
+  unclosedCurlyBrace: {
+    hedCode: 'SIDECAR_BRACES_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Opening curly brace at index ${'index'} of string "${'string'}" does not have a corresponding closing curly brace. ${'msg'}`,
+  },
+  nestedCurlyBrace: {
+    hedCode: 'SIDECAR_BRACES_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Opening curly brace at index ${'index'} of string "${'string'}" when curly brace expression is already open.`,
+  },
+  emptyCurlyBrace: {
+    hedCode: 'SIDECAR_BRACES_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Curly brace expression of string "${'string'}" is empty. ${'msg'}`,
+  },
+  curlyBracesInDefinition: {
+    hedCode: 'DEFINITION_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Illegal curly brace expression "${'sidecarKey'}" found in HED string containing definition "${'definition'}".`,
+  },
+  curlyBracesInHedColumn: {
+    hedCode: 'CHARACTER_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Curly brace expression "${'string'}" found in the HED column of a TSV file.`,
+  },
+  curlyBracesNotAllowed: {
+    hedCode: 'CHARACTER_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Curly brace expression not allowed in "${'string'}".`,
+  },
+  recursiveCurlyBraces: {
+    hedCode: 'SIDECAR_BRACES_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Sidecar key "${'sidecarKey'}", which has curly braces, is illegally referred to by a string using curly braces.`,
+  },
+  recursiveCurlyBracesWithKey: {
+    hedCode: 'SIDECAR_BRACES_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Sidecar key "${'sidecarKey'}", which has curly braces, is referred to by sidecar key "${'referrer'}", which also has curly braces.`,
+  },
+  undefinedCurlyBraces: {
+    hedCode: 'SIDECAR_BRACES_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Sidecar key "${'sidecarKey'}", used in curly braces, is not mapped to a defined column.`,
+  },
+  // Schema issues
+  invalidSchemaSpecification: {
+    hedCode: 'SCHEMA_LOAD_FAILED',
+    level: 'error',
+    message: issueMessageTemplate`The supplied HED schema specification is invalid. Specification: ${'spec'}.`,
+  },
+  missingSchemaSpecification: {
+    hedCode: 'SCHEMA_LOAD_FAILED',
+    level: 'error',
+    message: issueMessageTemplate`No valid HED schema specification was supplied.`,
+  },
+  bundledSchemaLoadFailed: {
+    hedCode: 'SCHEMA_LOAD_FAILED',
+    level: 'error',
+    message: issueMessageTemplate`Could not load HED schema for spec "${'spec'}" from bundled copy - "${'error'}".`,
+  },
+  localSchemaLoadFailed: {
+    hedCode: 'SCHEMA_LOAD_FAILED',
+    level: 'error',
+    message: issueMessageTemplate`Could not load HED schema from path "${'path'}" - "${'error'}".`,
+  },
+  remoteSchemaLoadFailed: {
+    hedCode: 'SCHEMA_LOAD_FAILED',
+    level: 'error',
+    message: issueMessageTemplate`Could not load HED schema "${'spec'}" from remote repository - "${'error'}".`,
+  },
+  unmatchedBaseSchema: {
+    hedCode: 'TAG_NAMESPACE_PREFIX_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Tag "${'tag'}" is declared to use a base schema in the dataset's schema listing, but no such schema was defined.`,
+  },
+  unmatchedLibrarySchema: {
+    hedCode: 'TAG_NAMESPACE_PREFIX_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`Tag "${'tag'}" is declared to use a library schema nicknamed "${'library'}" in the dataset's schema listing, but no such schema was found.`,
+  },
+  differentWithStandard: {
+    hedCode: 'SCHEMA_LOAD_FAILED',
+    level: 'error',
+    message: issueMessageTemplate`Could not merge lazy partnered schemas with different "withStandard" values: "${'first'}" and "${'second'}".`,
+  },
+  lazyPartneredSchemasShareTag: {
+    hedCode: 'SCHEMA_LOAD_FAILED',
+    level: 'error',
+    message: issueMessageTemplate`Lazy partnered schemas are incompatible because they share the short tag "${'tag'}". These schemas require different prefixes.`,
+  },
+  deprecatedStandardSchemaVersion: {
+    hedCode: 'VERSION_DEPRECATED',
+    level: 'error',
+    message: issueMessageTemplate`HED standard schema version ${'version'} is deprecated. Please upgrade to a newer version.`,
+  },
+  // BIDS issues
+  sidecarKeyMissing: {
+    hedCode: 'SIDECAR_KEY_MISSING',
+    level: 'warning',
+    message: issueMessageTemplate`Values "${'values'}" appear for sidecar key "${'sidecarKey'}" of file "${'file'}", but were not defined in any associated sidecar.`,
+  },
+  hedUsedAsSpliceButNoTsvHed: {
+    hedCode: 'SIDECAR_KEY_MISSING',
+    level: 'warning',
+    message: issueMessageTemplate`Key "{HED}" was referenced in sidecar for file "${'file'}", but this file does not have a HED column.`,
+  },
+  illegalSidecarHedType: {
+    hedCode: 'SIDECAR_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`The HED data for sidecar key "${'sidecarKey'}" of file "${'filePath'}" is not either a key-value dictionary or a string.`,
+  },
+  illegalSidecarHedKey: {
+    hedCode: 'SIDECAR_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`The string 'HED' or 'n/a' was illegally used as a top-level sidecar key.`,
+  },
+  illegalSidecarData: {
+    hedCode: 'SIDECAR_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`The data associated with sidecar key "${'sidecarKey'}" cannot be parsed.`,
+  },
+  illegalSidecarHedCategoricalValue: {
+    hedCode: 'SIDECAR_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`The string 'HED' or 'n/a' was illegally used as a sidecar categorical value for sidecar key "${'sidecarKey'}" in sidecar "${'filePath'}".`,
+  },
+  illegalSidecarHedDeepKey: {
+    hedCode: 'SIDECAR_INVALID',
+    level: 'error',
+    message: issueMessageTemplate`An illegal "HED" appeared as a key below level 2 in a sidecar entry with top-level key "${'sidecarKey'}".`,
+  },
+  // Internal errors
+  internalError: {
+    hedCode: 'INTERNAL_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`Internal error - message: "${'message'}".`,
+  },
+  networkReadError: {
+    hedCode: 'INTERNAL_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`I/O error when reading from network - server responded to URL "${'url'}" with HTTP status code ${'statusCode'} ${'statusText'}.`,
+  },
+  fileReadError: {
+    hedCode: 'INTERNAL_ERROR',
+    level: 'error',
+    message: issueMessageTemplate`I/O error when reading file or directory "${'fileName'}" - message: "${'message'}".`,
+  },
+  genericError: {
+    hedCode: 'INTERNAL_ERROR',
+    level: 'error',
+    message: (parameters, ...bounds) =>
+      `Unknown HED error "${parameters.internalCode}" - parameters: "${JSON.stringify(parameters)}".`,
+  },
+}
+
+export default issueData
diff --git a/src/issues/issues.js b/src/issues/issues.js
deleted file mode 100644
index 6d7e3899..00000000
--- a/src/issues/issues.js
+++ /dev/null
@@ -1,252 +0,0 @@
-/** This module holds the issue classes.
- * @module issues/issues
- */
-import mapValues from 'lodash/mapValues'
-
-import issueData from './data'
-
-export class IssueError extends Error {
-  /**
-   * The associated HED issue.
-   * @type {import('./issues.js').Issue}
-   */
-  issue
-
-  /**
-   * Constructor.
-   *
-   * @param {Issue} issue The associated HED issue.
-   * @param {...*} params Extra parameters (to be forwarded to the {@link https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Error | Error} constructor).
-   */
-  constructor(issue, ...params) {
-    // Pass remaining arguments (including vendor specific ones) to parent constructor
-    super(issue.message, ...params)
-
-    // Maintains proper stack trace for where our error was thrown (only available on V8)
-    if (Error.captureStackTrace) {
-      Error.captureStackTrace(this, IssueError)
-    }
-
-    this.name = 'IssueError'
-    this.issue = issue
-
-    Object.setPrototypeOf(this, IssueError.prototype)
-  }
-
-  /**
-   * Generate a new {@link Issue} object and immediately throw it as an {@link IssueError}.
-   *
-   * @param {string} internalCode The internal error code.
-   * @param {Object<string, (string|number[])>?} parameters The error string parameters.
-   * @throws {IssueError} Corresponding to the generated {@link Issue}.
-   */
-  static generateAndThrow(internalCode, parameters = {}) {
-    throw new IssueError(generateIssue(internalCode, parameters))
-  }
-
-  /**
-   * Generate a new {@link Issue} object for an internal error and immediately throw it as an {@link IssueError}.
-   *
-   * @param {string} message A message describing the internal error.
-   * @throws {IssueError} Corresponding to the generated internal error {@link Issue}.
-   */
-  static generateAndThrowInternalError(message = 'Unknown internal error') {
-    IssueError.generateAndThrow('internalError', { message: message })
-  }
-}
-
-/**
- * A HED validation error or warning.
- */
-export class Issue {
-  static SPECIAL_PARAMETERS = new Map([
-    ['sidecarKey', 'Sidecar key'],
-    ['tsvLine', 'TSV line'],
-    ['hedString', 'HED string'],
-    ['filePath', 'File path'],
-  ])
-
-  /**
-   * The internal error code.
-   * @type {string}
-   */
-  internalCode
-
-  /**
-   * The HED 3 error code.
-   * @type {string}
-   */
-  hedCode
-
-  /**
-   * The issue level (error or warning).
-   * @type {string}
-   */
-  level
-
-  /**
-   * The detailed error message.
-   * @type {string}
-   */
-  message
-
-  /**
-   * The parameters to the error message template. Object with string and map parameters.
-   * @type {Object}
-   */
-  parameters
-
-  /**
-   * Constructor.
-   *
-   * @param {string} internalCode The internal error code.
-   * @param {string} hedCode The HED 3 error code.
-   * @param {string} level The issue level (error or warning).
-   * @param {Object} parameters The error string parameters.
-   */
-  constructor(internalCode, hedCode, level, parameters) {
-    this.internalCode = internalCode
-    this.hedCode = hedCode
-    this.level = level
-    this.parameters = parameters
-    this.generateMessage()
-  }
-
-  /**
-   * Override of {@link https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Object/toString | Object.prototype.toString}.
-   *
-   * @returns {string} This issue's message.
-   */
-  toString() {
-    return this.message
-  }
-
-  /**
-   * (Re-)generate the issue message.
-   */
-  generateMessage() {
-    this._stringifyParameters()
-    const baseMessage = this._parseMessageTemplate()
-    const specialParameterMessages = this._parseSpecialParameters()
-    const hedSpecLink = this._generateHedSpecificationLink()
-
-    this.message = `${this.level.toUpperCase()}: [${this.hedCode}] ${baseMessage} ${specialParameterMessages} (${hedSpecLink}.)`
-  }
-
-  /**
-   * Convert all parameters except the substring bounds (an integer array) to their string forms.
-   * @private
-   */
-  _stringifyParameters() {
-    this.parameters = mapValues(this.parameters, (value, key) => (key === 'bounds' ? value : String(value)))
-  }
-
-  /**
-   * Find and parse the appropriate message template.
-   *
-   * @returns {string} The parsed base message.
-   * @private
-   */
-  _parseMessageTemplate() {
-    const bounds = this.parameters.bounds ?? []
-    const issueCodeData = issueData[this.internalCode]
-    if (issueCodeData === undefined) {
-      const messageTemplate = issueData.genericError.message
-      const tempParameters = {
-        internalCode: this.internalCode,
-        parameters: JSON.stringify(this.parameters),
-      }
-      return messageTemplate(tempParameters)
-    }
-    const messageTemplate = issueCodeData.message
-    return messageTemplate(...bounds, this.parameters)
-  }
-
-  /**
-   * Parse "special" parameters.
-   *
-   * @returns {string} The parsed special parameters.
-   * @private
-   */
-  _parseSpecialParameters() {
-    const specialParameterMessages = []
-    for (const [parameterName, parameterHeader] of Issue.SPECIAL_PARAMETERS) {
-      if (this.parameters[parameterName]) {
-        specialParameterMessages.push(`${parameterHeader}: "${this.parameters[parameterName]}".`)
-      }
-    }
-    return specialParameterMessages.join(' ')
-  }
-
-  /**
-   * Generate a link to the appropriate section in the HED specification.
-   *
-   * @returns {string} A link to the HED specification
-   * @private
-   */
-  _generateHedSpecificationLink() {
-    const hedCodeAnchor = this.hedCode.toLowerCase().replace(/_/g, '-')
-    return `For more information on this HED ${this.level}, see https://hed-specification.readthedocs.io/en/latest/Appendix_B.html#${hedCodeAnchor}`
-  }
-}
-
-/**
- * Generate a new issue object.
- *
- * @param {string} internalCode The internal error code.
- * @param {Object} parameters The error string parameters.
- * @returns {Issue} An object representing the issue.
- */
-export const generateIssue = function (internalCode, parameters = {}) {
-  const issueCodeData = issueData[internalCode] ?? issueData.genericError
-  const { hedCode, level } = issueCodeData
-  if (issueCodeData === issueData.genericError) {
-    parameters.internalCode = internalCode
-    internalCode = 'genericError'
-    parameters.parameters = 'Issue parameters: ' + JSON.stringify(parameters)
-  }
-
-  return new Issue(internalCode, hedCode, level, parameters)
-}
-
-/**
- * Update the parameters of a list of issues.
- *
- * @param {IssueError[] | Issue[]} issues The list of issues (different types can be intermixed).
- * @param {Object<string, string>} parameters The parameters to add.
- */
-export const updateIssueParameters = function (issues, parameters) {
-  for (const thisIssue of issues) {
-    if (thisIssue instanceof IssueError) {
-      _updateIssueParameters(thisIssue.issue, parameters)
-    } else if (thisIssue instanceof Issue) {
-      _updateIssueParameters(thisIssue, parameters)
-    }
-  }
-}
-
-/**
- * Update the parameters for an Issue.
- *
- * Note: the issue is modified in place.
- *
- * @param {Issue} issue The issue to be updated.
- * @param {Object<string, string>} parameters The parameters to add.
- */
-const _updateIssueParameters = function (issue, parameters) {
-  if (!issue.parameters) {
-    issue.parameters = {}
-  }
-
-  let changed = false
-  for (const [key, value] of Object.entries(parameters)) {
-    if (!Object.hasOwn(issue.parameters, key)) {
-      issue.parameters[key] = value
-      changed = true
-    }
-  }
-
-  if (changed) {
-    issue.generateMessage()
-  }
-}
diff --git a/src/issues/issues.ts b/src/issues/issues.ts
new file mode 100644
index 00000000..e8cada20
--- /dev/null
+++ b/src/issues/issues.ts
@@ -0,0 +1,298 @@
+/**
+ * This module holds the issue classes.
+ * @module issues/issues
+ */
+
+import issueData, { type IssueLevel } from './data'
+import { isNumberPair } from '../utils/array'
+
+export type IssueParameters = Record<string, unknown>
+type IssueSavedParameters = Record<string, string>
+
+export class IssueError extends Error {
+  /**
+   * The associated HED issue.
+   */
+  public readonly issue: Issue
+
+  /**
+   * Constructor.
+   *
+   * @param issue The associated HED issue.
+   * @param params Extra parameters (to be forwarded to the {@link https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Error | Error} constructor).
+   */
+  constructor(issue: Issue, ...params: any[]) {
+    // Pass remaining arguments (including vendor specific ones) to parent constructor
+    super(issue.message, ...params)
+
+    // Maintains proper stack trace for where our error was thrown (only available on V8)
+    if (Error.captureStackTrace) {
+      Error.captureStackTrace(this, IssueError)
+    }
+
+    this.name = 'IssueError'
+    this.issue = issue
+
+    Object.setPrototypeOf(this, IssueError.prototype)
+  }
+
+  /**
+   * Generate a new {@link Issue} object and immediately throw it as an {@link IssueError}.
+   *
+   * @param internalCode The internal error code.
+   * @param parameters The error string parameters.
+   * @throws {IssueError} Corresponding to the generated {@link Issue}.
+   */
+  public static generateAndThrow(internalCode: string, parameters: IssueParameters = {}) {
+    throw new IssueError(generateIssue(internalCode, parameters))
+  }
+
+  /**
+   * Generate a new {@link Issue} object for an internal error and immediately throw it as an {@link IssueError}.
+   *
+   * @param message A message describing the internal error. The message should not end with any punctuation.
+   * @throws {IssueError} Corresponding to the generated internal error {@link Issue}.
+   */
+  public static generateAndThrowInternalError(message: string = 'Unknown internal error') {
+    IssueError.generateAndThrow('internalError', { message: message })
+  }
+}
+
+/**
+ * A HED validation error or warning.
+ */
+export class Issue {
+  private static readonly SPECIAL_PARAMETERS = new Map([
+    ['sidecarKey', 'Sidecar key'],
+    ['tsvLine', 'TSV line'],
+    ['hedString', 'HED string'],
+    ['filePath', 'File path'],
+  ])
+
+  /**
+   * The internal error code.
+   */
+  public readonly internalCode: string
+
+  /**
+   * The HED 3 error code.
+   */
+  public readonly hedCode: string
+
+  /**
+   * The issue level (error or warning).
+   */
+  public readonly level: IssueLevel
+
+  /**
+   * The bounds of this issue.
+   */
+  _bounds: [number, number] | undefined
+
+  /**
+   * The parameters to the error message template.
+   */
+  _parameters: IssueSavedParameters
+
+  /**
+   * Constructor.
+   *
+   * @param internalCode The internal error code.
+   * @param hedCode The HED 3 error code.
+   * @param level The issue level (error or warning).
+   * @param parameters The error string parameters.
+   */
+  constructor(internalCode: string, hedCode: string, level: IssueLevel, parameters: IssueParameters) {
+    this.internalCode = internalCode
+    this.hedCode = hedCode
+    this.level = level
+    this.parameters = parameters
+  }
+
+  /**
+   * Override of {@link https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Object/toString | Object.prototype.toString}.
+   *
+   * @returns This issue's message.
+   */
+  public toString(): string {
+    return this.message
+  }
+
+  /**
+   * Generate the detailed error message.
+   *
+   * @returns This issue's message.
+   */
+  public get message(): string {
+    const baseMessage = this._parseMessageTemplate()
+    const specialParameterMessages = this._parseSpecialParameters()
+    const hedSpecLink = this._generateHedSpecificationLink()
+
+    return `${this.level.toUpperCase()}: [${this.hedCode}] ${baseMessage} ${specialParameterMessages} (${hedSpecLink}.)`
+  }
+
+  /**
+   * Get the issue parameters.
+   *
+   * @returns The issue parameters.
+   */
+  public get parameters(): IssueSavedParameters {
+    return this._parameters
+  }
+
+  /**
+   * Get the issue's bounds.
+   *
+   * @returns The issue bounds within the parent string.
+   */
+  public get bounds(): [number, number] | undefined {
+    return this._bounds
+  }
+
+  /**
+   * Validate and set the issue's bounds.
+   *
+   * @param value The issue bounds within the parent string.
+   */
+  private set bounds(value: unknown) {
+    if (this._bounds) {
+      return
+    }
+    if (isNumberPair(value)) {
+      this._bounds = value
+    } else {
+      IssueError.generateAndThrowInternalError('Bounds must be a numeric pair')
+    }
+  }
+
+  /**
+   * Set new parameters by converting all parameters except the substring bounds (an integer array) to their string forms.
+   *
+   * @param parameters The new issue parameters.
+   */
+  public set parameters(parameters: IssueParameters) {
+    this._parameters = {}
+    this.addParameters(parameters)
+  }
+
+  /**
+   * Determine whether this issue has a given parameter.
+   *
+   * @param name The parameter name to check.
+   * @returns Whether this issue already has a parameter by that name.
+   */
+  public hasParameter(name: string): boolean {
+    if (name === 'bounds') {
+      return this._bounds !== undefined
+    }
+    return Object.hasOwn(this._parameters, name)
+  }
+
+  /**
+   * Add a new parameter value.
+   *
+   * @param name The parameter name.
+   * @param value The new parameter value.
+   */
+  public addParameter(name: string, value: unknown): void {
+    if (this.hasParameter(name)) {
+      return
+    }
+    if (name === 'bounds') {
+      this.bounds = value
+      return
+    }
+    this._parameters[name] = String(value)
+  }
+
+  /**
+   * Add multiple parameters for this Issue.
+   *
+   * @param parameters The new values of the parameters.
+   */
+  public addParameters(parameters: IssueParameters): void {
+    for (const [key, value] of Object.entries(parameters)) {
+      this.addParameter(key, value)
+    }
+  }
+
+  /**
+   * Find and parse the appropriate message template.
+   *
+   * @returns The parsed base message.
+   */
+  private _parseMessageTemplate(): string {
+    const issueCodeData = issueData[this.internalCode]
+    const bounds = this._bounds ?? []
+    if (issueCodeData === undefined) {
+      const messageTemplate = issueData.genericError.message
+      const tempParameters = {
+        internalCode: this.internalCode,
+        parameters: JSON.stringify(this.parameters),
+      }
+      return messageTemplate(tempParameters)
+    }
+    const messageTemplate = issueCodeData.message
+    return messageTemplate(this.parameters, ...bounds)
+  }
+
+  /**
+   * Parse "special" parameters.
+   *
+   * @returns The parsed special parameters.
+   */
+  private _parseSpecialParameters(): string {
+    const specialParameterMessages = []
+    for (const [parameterName, parameterHeader] of Issue.SPECIAL_PARAMETERS) {
+      if (this.parameters[parameterName]) {
+        specialParameterMessages.push(`${parameterHeader}: "${this.parameters[parameterName]}".`)
+      }
+    }
+    return specialParameterMessages.join(' ')
+  }
+
+  /**
+   * Generate a link to the appropriate section in the HED specification.
+   *
+   * @returns A link to the HED specification
+   */
+  private _generateHedSpecificationLink(): string {
+    const hedCodeAnchor = this.hedCode.toLowerCase().replace(/_/g, '-')
+    return `For more information on this HED ${this.level}, see https://hed-specification.readthedocs.io/en/latest/Appendix_B.html#${hedCodeAnchor}`
+  }
+}
+
+/**
+ * Generate a new issue object.
+ *
+ * @param internalCode The internal error code.
+ * @param parameters The error string parameters.
+ * @returns An object representing the issue.
+ */
+export function generateIssue(internalCode: string, parameters: IssueParameters = {}): Issue {
+  const issueCodeData = issueData[internalCode] ?? issueData.genericError
+  const { hedCode, level } = issueCodeData
+  if (issueCodeData === issueData.genericError) {
+    parameters.internalCode = internalCode
+    internalCode = 'genericError'
+    parameters.parameters = 'Issue parameters: ' + JSON.stringify(parameters)
+  }
+
+  return new Issue(internalCode, hedCode, level, parameters)
+}
+
+/**
+ * Update the parameters of a list of issues.
+ *
+ * @param issues The list of issues (different types can be intermixed).
+ * @param parameters The parameters to add.
+ */
+export function addIssueParameters(issues: Array<Issue | IssueError>, parameters: IssueParameters) {
+  for (const thisIssue of issues) {
+    if (thisIssue instanceof IssueError) {
+      thisIssue.issue.addParameters(parameters)
+    } else if (thisIssue instanceof Issue) {
+      thisIssue.addParameters(parameters)
+    }
+  }
+}
diff --git a/src/parser/definitionManager.js b/src/parser/definitionManager.js
index dab49644..f33d5ec4 100644
--- a/src/parser/definitionManager.js
+++ b/src/parser/definitionManager.js
@@ -55,7 +55,7 @@ export class Definition {
   /**
    * Return the evaluated definition contents and any issues.
    * @param {ParsedHedTag} tag - The parsed HED tag whose details should be checked.
-   * @param {Schemas} hedSchema - The HED schemas used to validate against.
+   * @param {HedSchemas} hedSchema - The HED schemas used to validate against.
    * @param {boolean} placeholderAllowed - If true then placeholder is allowed in the def tag.
    * @returns {Array} - Returns [string, Issue[], Issue[]] containing the evaluated normalized definition string and any issues in the evaluation,
    */
@@ -113,7 +113,7 @@ export class Definition {
    * Create a list of Definition objects from a list of strings.
    *
    * @param {string} hedString - A string representing a definition.
-   * @param {Schemas} hedSchemas - The HED schemas to use in creation.
+   * @param {HedSchemas} hedSchemas - The HED schemas to use in creation.
    * @returns {Array} - Returns [Definition, Issue[], Issue[]] with the definition and any issues.
    */
   static createDefinition(hedString, hedSchemas) {
@@ -227,7 +227,7 @@ export class DefinitionManager {
   /**
    * Check the Def tags in a HED string for missing or incorrectly used Def tags.
    * @param {ParsedHedString} hedString - A parsed HED string to be checked.
-   * @param {Schemas} hedSchemas - Schemas to validate against.
+   * @param {HedSchemas} hedSchemas - Schemas to validate against.
    * @param {boolean} placeholderAllowed - If true then placeholder is allowed in the def tag.
    * @returns {Issue[]} - If there is no matching definition or definition applied incorrectly.
    */
@@ -246,7 +246,7 @@ export class DefinitionManager {
   /**
    * Check the Def tags in a HED string for missing or incorrectly used Def-expand tags.
    * @param {ParsedHedString} hedString - A parsed HED string to be checked.
-   * @param {Schemas} hedSchemas - Schemas to validate against.
+   * @param {HedSchemas} hedSchemas - Schemas to validate against.
    * @param {boolean} placeholderAllowed - If true then placeholder is allowed in the def tag.
    * @returns {Issue[]} - If there is no matching definition or definition applied incorrectly.
    */
@@ -266,7 +266,7 @@ export class DefinitionManager {
   /**
    * Evaluate the definition based on a parsed HED tag.
    * @param {ParsedHedTag} tag - The tag to evaluate against the definitions.
-   * @param {Schemas} hedSchemas - The schemas to be used to assist in the evaluation.
+   * @param {HedSchemas} hedSchemas - The schemas to be used to assist in the evaluation.
    * @param {boolean} placeholderAllowed - If true then placeholder is allowed in the def tag.
    * @returns {Array} - Returns [string, Issue[]] with definition contents for this tag and any issues.
    *
@@ -285,7 +285,7 @@ export class DefinitionManager {
   /**
    * Recursively check for Def-expand groups in this group.
    * @param {ParsedHedGroup} topGroup - a top group in a HED string to be evaluated for Def-expand groups.
-   * @param {Schemas} hedSchemas - The HED schemas to used in the check.
+   * @param {HedSchemas} hedSchemas - The HED schemas to used in the check.
    * @param {boolean} placeholderAllowed - If true then placeholder is allowed in the def tag.
    * @returns {Issue[]}
    * @private
@@ -345,7 +345,7 @@ export class DefinitionManager {
    * Create a list of Definition objects from a list of strings.
    *
    * @param {string[]} defStrings - A list of string definitions.
-   * @param {Schemas} hedSchemas - The HED schemas to use in creation.
+   * @param {HedSchemas} hedSchemas - The HED schemas to use in creation.
    * @returns {Array} - Returns [Definition[], Issue[]] with a definition list and any issues found.
    */
   static createDefinitions(defStrings, hedSchemas) {
diff --git a/src/parser/eventManager.js b/src/parser/eventManager.js
index 8584bac5..f4bc9c30 100644
--- a/src/parser/eventManager.js
+++ b/src/parser/eventManager.js
@@ -2,7 +2,7 @@
  * @module parser/eventManager
  */
 import { generateIssue } from '../issues/issues'
-import { BidsHedIssue } from '../bids/types/issues.js'
+import { BidsHedIssue } from '../bids/types/issues'
 
 export class Event {
   /**
diff --git a/src/parser/parsedHedTag.js b/src/parser/parsedHedTag.js
index 63c1fa8c..3e118196 100644
--- a/src/parser/parsedHedTag.js
+++ b/src/parser/parsedHedTag.js
@@ -28,7 +28,7 @@ export default class ParsedHedTag extends ParsedHedSubstring {
 
   /**
    * The HED schema this tag belongs to.
-   * @type {Schema}
+   * @type {HedSchema}
    */
 
   schema
@@ -73,7 +73,7 @@ export default class ParsedHedTag extends ParsedHedSubstring {
    * Constructor.
    *
    * @param {TagSpec} tagSpec The token for this tag.
-   * @param {Schemas} hedSchemas The collection of HED schemas.
+   * @param {HedSchemas} hedSchemas The collection of HED schemas.
    * @param {string} hedString The original HED string.
    * @throws {IssueError} If tag conversion or parsing fails.
    */
@@ -86,7 +86,7 @@ export default class ParsedHedTag extends ParsedHedSubstring {
   /**
    * Convert this tag to its various forms
    *
-   * @param {Schemas} hedSchemas The collection of HED schemas.
+   * @param {HedSchemas} hedSchemas The collection of HED schemas.
    * @param {string} hedString The original HED string.
    * @param {TagSpec} tagSpec The token for this tag.
    * @throws {IssueError} If tag conversion or parsing fails.
diff --git a/src/parser/parser.js b/src/parser/parser.js
index 67867a51..3af8ef21 100644
--- a/src/parser/parser.js
+++ b/src/parser/parser.js
@@ -19,7 +19,7 @@ class HedStringParser {
 
   /**
    * The collection of HED schemas.
-   * @type {Schemas}
+   * @type {HedSchemas}
    */
   hedSchemas
 
@@ -39,7 +39,7 @@ class HedStringParser {
    * Constructor.
    *
    * @param {string|ParsedHedString} hedString - The HED string to be parsed.
-   * @param {Schemas} hedSchemas - The collection of HED schemas.
+   * @param {HedSchemas} hedSchemas - The collection of HED schemas.
    * @param {boolean} definitionsAllowed - True if definitions are allowed
    * @param {boolean} placeholdersAllowed - True if placeholders are allowed
    */
@@ -172,7 +172,7 @@ class HedStringParser {
    * Parse a list of HED strings.
    *
    * @param {string[]|ParsedHedString[]} hedStrings A list of HED strings.
-   * @param {Schemas} hedSchemas The collection of HED schemas.
+   * @param {HedSchemas} hedSchemas The collection of HED schemas.
    * @param {boolean} definitionsAllowed - True if definitions are allowed
    * @param {boolean} placeholdersAllowed - True if placeholders are allowed
    * @returns {Array} - [ParsedHedString[], Issue[], Issue[]] representing the parsed HED strings and any errors and warnings.
@@ -206,7 +206,7 @@ class HedStringParser {
  * ###Note: now separates errors and warnings for easier handling.
  *
  * @param {string|ParsedHedString} hedString A (possibly already parsed) HED string.
- * @param {Schemas} hedSchemas - The collection of HED schemas.
+ * @param {HedSchemas} hedSchemas - The collection of HED schemas.
  * @param {boolean} definitionsAllowed - True if definitions are allowed.
  * @param {boolean} placeholdersAllowed - True if placeholders are allowed.
  * @param {boolean} fullValidation - True if full validation is required.
@@ -220,7 +220,7 @@ export function parseHedString(hedString, hedSchemas, definitionsAllowed, placeh
  * Parse a HED string in a standalone context.
  *
  * @param {string|ParsedHedString} hedString - A (possibly already parsed) HED string.
- * @param {Schemas} hedSchemas - The collection of HED schemas.
+ * @param {HedSchemas} hedSchemas - The collection of HED schemas.
  * @param {DefinitionManager|null} defManager - The definition manager to use for parsing definitions.
  * @returns {Array} - [ParsedHedString, Issue[], Issue[]] representing the parsed HED string and any issues found.
  */
@@ -234,7 +234,7 @@ export function parseStandaloneString(hedString, hedSchemas, defManager = null)
  * ###Note: now separates errors and warnings for easier handling.
  *
  * @param {string[]|ParsedHedString[]} hedStrings - A list of HED strings.
- * @param {Schemas} hedSchemas - The collection of HED schemas.
+ * @param {HedSchemas} hedSchemas - The collection of HED schemas.
  * @param {boolean} definitionsAllowed - True if definitions are allowed
  * @param {boolean} placeholdersAllowed - True if placeholders are allowed
  * @param {boolean} fullValidation - True if full validation is required.
diff --git a/src/parser/splitter.js b/src/parser/splitter.js
index ec1f90bb..702ee830 100644
--- a/src/parser/splitter.js
+++ b/src/parser/splitter.js
@@ -17,7 +17,7 @@ export default class HedStringSplitter {
 
   /**
    * The collection of HED schemas.
-   * @type {Schemas}
+   * @type {HedSchemas}
    */
   hedSchemas
 
@@ -31,7 +31,7 @@ export default class HedStringSplitter {
    * Constructor.
    *
    * @param {string} hedString The HED string to be split and parsed.
-   * @param {Schemas} hedSchemas The collection of HED schemas.
+   * @param {HedSchemas} hedSchemas The collection of HED schemas.
    */
   constructor(hedString, hedSchemas) {
     this.hedString = hedString
@@ -69,7 +69,7 @@ export default class HedStringSplitter {
   _createParsedTags(tagSpecs, groupSpecs) {
     // Create tags from specifications
     this.issues = []
-    const parsedTags = recursiveMap((tagSpec) => this._createParsedTag(tagSpec), tagSpecs)
+    const parsedTags = recursiveMap(tagSpecs, (tagSpec) => this._createParsedTag(tagSpec))
 
     // Create groups from the parsed tags
     const parsedTagsWithGroups = this._createParsedGroups(parsedTags, groupSpecs.children)
diff --git a/src/parser/tagConverter.js b/src/parser/tagConverter.js
index 5f6025ee..3e3c6c43 100644
--- a/src/parser/tagConverter.js
+++ b/src/parser/tagConverter.js
@@ -6,8 +6,8 @@ import { getTagSlashIndices } from '../utils/hedStrings'
 import { ReservedChecker } from './reservedChecker'
 
 /**
- * @typedef {import('../schema/entries.js').SchemaTag} SchemaTag
- * @typedef {import('../schema/containers.js').Schemas} Schemas
+ * @typedef {import('../schema/entries.ts').SchemaTag} SchemaTag
+ * @typedef {import('../schema/containers.ts').HedSchemas} Schemas
  * @typedef {import('./tokenizer.js').TagSpec} TagSpec
  */
 
@@ -41,7 +41,7 @@ export default class TagConverter {
 
   /**
    * A HED schema collection.
-   * @type {Schemas}
+   * @type {HedSchemas}
    */
   hedSchemas
 
@@ -67,7 +67,7 @@ export default class TagConverter {
    * Constructor.
    *
    * @param {TagSpec} tagSpec The tag specification to convert.
-   * @param {Schemas} hedSchemas The HED schema collection.
+   * @param {HedSchemas} hedSchemas The HED schema collection.
    */
   constructor(tagSpec, hedSchemas) {
     this.hedSchemas = hedSchemas
diff --git a/src/schema/config.js b/src/schema/config.ts
similarity index 55%
rename from src/schema/config.js
rename to src/schema/config.ts
index e377cf24..01db3cf4 100644
--- a/src/schema/config.js
+++ b/src/schema/config.ts
@@ -7,7 +7,7 @@
 // The actual loading mechanism is handled by the schema loader,
 // which may use an application-provided loader for browser environments
 // or a Node.js fs-based loader for server-side/test environments.
-export const localSchemaNames = [
+const _localSchemaNames = [
   'HED8.0.0',
   'HED8.1.0',
   'HED8.2.0',
@@ -20,23 +20,36 @@ export const localSchemaNames = [
   'HED_score_2.1.0',
   // Add other bundled schema base names here if needed
 ]
+/**
+ * This list defines the base names of HED XML schema files that are considered "bundled" with the library.
+ * The actual loading mechanism is handled by the schema loader, which may use an application-provided loader
+ * for browser environments or a Node.js fs-based loader for server-side/test environments.
+ */
+export const localSchemaNames = Object.freeze(_localSchemaNames)
 
-let schemaMap
+let _localSchemaMap
 
 // @ts-ignore __VITE_ENV__ is defined by Vite in browser builds
 if (typeof __VITE_ENV__ !== 'undefined' && __VITE_ENV__) {
   // In the browser, this map is not used. The loader uses import.meta.glob.
-  schemaMap = new Map()
+  _localSchemaMap = new Map()
 } else {
   // For Node.js, pre-load the schemas.
-  schemaMap = new Map(
+  _localSchemaMap = new Map(
     localSchemaNames.map((localSchema) => [localSchema, require(`../data/schemas/${localSchema}.xml`)]),
   )
 }
 
-export const localSchemaMap = schemaMap
+/**
+ * A mapping from the bundled schema names to their XML data (as strings).
+ */
+export const localSchemaMap = Object.freeze(_localSchemaMap)
 
-export const getLocalSchemaVersions = function () {
-  // Return a copy of the local schema names to avoid external modifications
+/**
+ * Return a copy of the bundled schema names without the "HED" prefix.
+ *
+ * @returns The list of unprefixed bundled schema names.
+ */
+export function getLocalSchemaVersions(): string[] {
   return localSchemaNames.map((name) => name.replace(/^HED_?/, ''))
 }
diff --git a/src/schema/containers.js b/src/schema/containers.js
deleted file mode 100644
index aaeaead8..00000000
--- a/src/schema/containers.js
+++ /dev/null
@@ -1,149 +0,0 @@
-/** This module holds the schema container classes.
- * @module schema/containers
- */
-import lt from 'semver/functions/lt'
-
-import { IssueError } from '../issues/issues'
-
-/**
- * An imported HED 3 schema.
- */
-export class Schema {
-  /**
-   * The HED schema version.
-   * @type {string}
-   */
-  version
-
-  /**
-   * The HED library schema name.
-   * @type {string}
-   */
-  library
-
-  /**
-   * This schema's prefix in the active schema set.
-   * @type {string}
-   */
-  prefix
-
-  /**
-   * The collection of schema entries.
-   * @type {SchemaEntries}
-   */
-  entries
-
-  /**
-   * The standard HED schema version this schema is linked to.
-   * @type {string}
-   */
-  withStandard
-
-  /**
-   * Constructor.
-   *
-   * @param {Object} xmlData The schema XML data.
-   * @param {SchemaEntries} entries A collection of schema entries.
-   */
-  constructor(xmlData, entries) {
-    const rootElement = xmlData.HED
-    this.version = rootElement?.$?.version
-    this.library = rootElement?.$?.library ?? ''
-
-    if (!this.library && this.version && lt(this.version, '8.0.0')) {
-      IssueError.generateAndThrow('deprecatedStandardSchemaVersion', {
-        version: this.version,
-      })
-    }
-
-    if (!this.library) {
-      this.withStandard = this.version
-    } else {
-      this.withStandard = xmlData.HED?.$?.withStandard
-    }
-    this.entries = entries
-  }
-}
-
-/**
- * An imported lazy partnered HED 3 schema.
- */
-export class PartneredSchema extends Schema {
-  /**
-   * The actual HED 3 schemas underlying this partnered schema.
-   * @type {Schema[]}
-   */
-  actualSchemas
-
-  /**
-   * Constructor.
-   *
-   * @param {Schema[]} actualSchemas The actual HED 3 schemas underlying this partnered schema.
-   */
-  constructor(actualSchemas) {
-    if (actualSchemas.length === 0) {
-      IssueError.generateAndThrowInternalError('A partnered schema set must contain at least one schema.')
-    }
-    super({}, actualSchemas[0].entries)
-    this.actualSchemas = actualSchemas
-    this.withStandard = actualSchemas[0].withStandard
-    this.library = undefined
-  }
-}
-
-/**
- * The collection of active HED schemas.
- */
-export class Schemas {
-  /**
-   * The imported HED schemas.
-   *
-   * The empty string key ("") corresponds to the schema with no prefix,
-   * while other keys correspond to the respective prefixes.
-   *
-   * @type {Map<string, Schema>}
-   */
-  schemas
-
-  /**
-   * Constructor.
-   * @param {Schema|Map<string, Schema>} schemas The imported HED schemas.
-   */
-  constructor(schemas) {
-    if (schemas instanceof Map) {
-      this.schemas = schemas
-    } else if (schemas instanceof Schema) {
-      this.schemas = new Map([['', schemas]])
-    } else {
-      IssueError.generateAndThrowInternalError('Invalid type passed to Schemas constructor')
-    }
-    if (this.schemas) {
-      this._addPrefixesToSchemas()
-    }
-  }
-
-  _addPrefixesToSchemas() {
-    for (const [prefix, schema] of this.schemas) {
-      schema.prefix = prefix
-    }
-  }
-
-  /**
-   * Return the schema with the given prefix.
-   *
-   * @param {string} schemaName A prefix in the schema set.
-   * @returns {Schema} The schema object corresponding to that prefix.
-   */
-  getSchema(schemaName) {
-    return this.schemas?.get(schemaName)
-  }
-
-  /**
-   * The base schema, i.e. the schema with no prefix, if one is defined.
-   *
-   * @returns {Schema}
-   */
-  get baseSchema() {
-    return this.getSchema('')
-  }
-}
diff --git a/src/schema/containers.ts b/src/schema/containers.ts
new file mode 100644
index 00000000..4dcc1eeb
--- /dev/null
+++ b/src/schema/containers.ts
@@ -0,0 +1,153 @@
+/** This module holds the schema container classes.
+ * @module schema/containers
+ */
+import lt from 'semver/functions/lt'
+
+import { IssueError } from '../issues/issues'
+import { type SchemaEntries } from './entries'
+import { type HedSchemaXMLObject } from './xmlType'
+
+export class HedSchema {
+  /**
+   * The collection of schema entries.
+   */
+  readonly entries: SchemaEntries
+
+  /**
+   * The standard HED schema version this schema is linked to.
+   */
+  readonly withStandard: string
+
+  /**
+   * This schema's prefix in the active schema set.
+   */
+  prefix: string
+
+  /**
+   * Constructor.
+   *
+   * @param entries A collection of schema entries.
+   * @param withStandard The standard HED schema version this schema is linked to.
+   */
+  constructor(entries: SchemaEntries, withStandard: string) {
+    this.entries = entries
+    this.withStandard = withStandard
+  }
+}
+
+/**
+ * An imported HED 3 schema.
+ */
+export class PrimarySchema extends HedSchema {
+  /**
+   * The HED schema version.
+   */
+  readonly version: string
+
+  /**
+   * The HED library schema name.
+   */
+  readonly library: string
+
+  /**
+   * Constructor.
+   *
+   * @param xmlData The schema XML data.
+   * @param entries A collection of schema entries.
+   */
+  constructor(xmlData: HedSchemaXMLObject, entries: SchemaEntries) {
+    let withStandard
+    const rootElement = xmlData.HED
+    const library = rootElement.$.library ?? ''
+    const version = rootElement.$.version
+
+    if (!library) {
+      withStandard = version
+    } else {
+      withStandard = xmlData.HED.$.withStandard
+    }
+
+    super(entries, withStandard)
+
+    if (!library && version && lt(version, '8.0.0')) {
+      IssueError.generateAndThrow('deprecatedStandardSchemaVersion', {
+        version,
+      })
+    }
+
+    this.library = library
+    this.version = version
+  }
+}
+
+/**
+ * An imported lazy partnered HED 3 schema.
+ */
+export class PartneredSchema extends HedSchema {
+  /**
+   * The actual HED 3 schemas underlying this partnered schema.
+   */
+  readonly actualSchemas: HedSchema[]
+
+  /**
+   * Constructor.
+   *
+   * @param actualSchemas The actual HED 3 schemas underlying this partnered schema.
+   */
+  constructor(actualSchemas: HedSchema[]) {
+    if (actualSchemas.length === 0) {
+      IssueError.generateAndThrowInternalError('A partnered schema set must contain at least one schema.')
+    }
+    super(actualSchemas[0].entries, actualSchemas[0].withStandard)
+    this.actualSchemas = actualSchemas
+  }
+}
+
+/**
+ * The collection of active HED schemas.
+ */
+export class HedSchemas {
+  /**
+   * The imported HED schemas.
+   *
+   * The empty string key ("") corresponds to the schema with no prefix,
+   * while other keys correspond to the respective prefixes.
+   */
+  readonly schemas: Map<string, HedSchema>
+
+  /**
+   * Constructor.
+   * @param schemas The imported HED schemas.
+   */
+  constructor(schemas: Map<string, HedSchema> | HedSchema) {
+    if (schemas instanceof Map) {
+      this.schemas = schemas
+    } else {
+      this.schemas = new Map([['', schemas]])
+    }
+    this.#addPrefixesToSchemas()
+  }
+
+  #addPrefixesToSchemas(): void {
+    for (const [prefix, schema] of this.schemas) {
+      schema.prefix = prefix
+    }
+  }
+
+  /**
+   * Return the schema with the given prefix.
+   *
+   * @param schemaName A prefix in the schema set.
+   * @returns The schema object corresponding to that prefix.
+   */
+  public getSchema(schemaName: string): HedSchema | undefined {
+    return this.schemas?.get(schemaName)
+  }
+
+  /**
+   * The base schema, i.e. the schema with no prefix, if one is defined.
+   */
+  public get baseSchema(): HedSchema | undefined {
+    return this.getSchema('')
+  }
+}
diff --git a/src/schema/entries.js b/src/schema/entries.js
deleted file mode 100644
index b7839a64..00000000
--- a/src/schema/entries.js
+++ /dev/null
@@ -1,877 +0,0 @@
-/** This module holds the schema entity classes.
- * @module schema/entries
- */
-
-import pluralize from 'pluralize'
-pluralize.addUncountableRule('hertz')
-
-import { IssueError } from '../issues/issues'
-import Memoizer from '../utils/memoizer'
-
-/**
- * SchemaEntries class
- */
-export class SchemaEntries extends Memoizer {
-  /**
-   * The schema's properties.
-   * @type {SchemaEntryManager<SchemaProperty>}
-   */
-  properties
-
-  /**
-   * The schema's attributes.
-   * @type {SchemaEntryManager<SchemaAttribute>}
-   */
-  attributes
-
-  /**
-   * The schema's value classes.
-   * @type {SchemaEntryManager<SchemaValueClass>}
-   */
-  valueClasses
-
-  /**
-   * The schema's unit classes.
-   * @type {SchemaEntryManager<SchemaUnitClass>}
-   */
-  unitClasses
-
-  /**
-   * The schema's unit modifiers.
-   * @type {SchemaEntryManager<SchemaUnitModifier>}
-   */
-  unitModifiers
-
-  /**
-   * The schema's tags.
-   * @type {SchemaEntryManager<SchemaTag>}
-   */
-  tags
-
-  /**
-   * Constructor.
-   * @param {SchemaParser} schemaParser A constructed schema parser.
-   */
-  constructor(schemaParser) {
-    super()
-    this.properties = new SchemaEntryManager(schemaParser.properties)
-    this.attributes = new SchemaEntryManager(schemaParser.attributes)
-    this.valueClasses = schemaParser.valueClasses
-    this.unitClasses = schemaParser.unitClasses
-    this.unitModifiers = schemaParser.unitModifiers
-    this.tags = schemaParser.tags
-  }
-}
-
-/**
- * A manager of {@link SchemaEntry} objects.
- *
- * @template T
- */
-export class SchemaEntryManager extends Memoizer {
-  /**
-   * The definitions managed by this entry manager.
-   * @type {Map<string, T>}
-   */
-  _definitions
-
-  /**
-   * Constructor.
-   *
-   * @param {Map<string, T>} definitions A map of schema entry definitions.
-   */
-  constructor(definitions) {
-    super()
-    this._definitions = definitions
-  }
-
-  /**
-   * Iterator over the entry manager's entries.
-   *
-   * @template T
-   * @returns {IterableIterator} - [string, T]
-   */
-  [Symbol.iterator]() {
-    return this._definitions.entries()
-  }
-
-  /**
-   * Iterator over the entry manager's keys.
-   *
-   * @returns {IterableIterator} - [string]
-   */
-  keys() {
-    return this._definitions.keys()
-  }
-
-  /**
-   * Iterator over the entry manager's keys.
-   *
-   * @returns {IterableIterator} - [T]
-   */
-  values() {
-    return this._definitions.values()
-  }
-
-  /**
-   * Determine whether the entry with the given name exists.
-   *
-   * @param {string} name The name of the entry.
-   * @return {boolean} Whether the entry exists.
-   */
-  hasEntry(name) {
-    return this._definitions.has(name)
-  }
-
-  /**
-   * Get the entry with the given name.
-   *
-   * @param {string} name - The name of the entry to retrieve.
-   * @returns {T} - The entry with that name.
-   */
-  getEntry(name) {
-    return this._definitions.get(name)
-  }
-
-  /**
-   * Get a collection of entries with the given boolean attribute.
-   *
-   * @param {string} booleanAttributeName - The name of boolean attribute to filter on.
-   * @returns {Map} - string->T representing a  collection of entries with that attribute.
-   */
-  getEntriesWithBooleanAttribute(booleanAttributeName) {
-    return this._memoize(booleanAttributeName, () => {
-      return this.filter(([, v]) => {
-        return v.hasBooleanAttribute(booleanAttributeName)
-      })
-    })
-  }
-
-  /**
-   * Filter the map underlying this manager.
-   *
-   * @param {function} fn -  ([string, T]): boolean specifying the filtering function.
-   * @returns {Map} - string->T representing a  collection of entries with that attribute.
-   */
-  filter(fn) {
-    return SchemaEntryManager._filterDefinitionMap(this._definitions, fn)
-  }
-
-  /**
-   * Filter a definition map.
-   *
-   * @template T
-   * @param {Map<string, T>} definitionMap The definition map.
-   * @param {function} fn -  ([string, T]):boolean specifying the filtering function.
-   * @returns {Map} - string->T representing the filtered definitions.
-   * @protected
-   */
-  static _filterDefinitionMap(definitionMap, fn) {
-    const pairArray = Array.from(definitionMap.entries())
-    return new Map(pairArray.filter((entry) => fn(entry)))
-  }
-
-  /**
-   * The number of entries in this collection.
-   *
-   * @returns {number} The number of entries in this collection.
-   */
-  get length() {
-    return this._definitions.size
-  }
-}
-
-/**
- * SchemaEntry class
- */
-export class SchemaEntry extends Memoizer {
-  /**
-   * The name of this schema entry.
-   * @type {string}
-   */
-  _name
-
-  constructor(name) {
-    super()
-    this._name = name
-  }
-
-  /**
-   * The name of this schema entry.
-   * @returns {string}
-   */
-  get name() {
-    return this._name
-  }
-
-  /**
-   * Whether this schema entry has this attribute (by name).
-   *
-   * This method is a stub to be overridden in {@link SchemaEntryWithAttributes}.
-   *
-   * @param {string} attributeName The attribute to check for.
-   * @returns {boolean} Whether this schema entry has this attribute.
-   */
-  // eslint-disable-next-line no-unused-vars
-  hasBooleanAttribute(attributeName) {
-    return false
-  }
-}
-
-// TODO: Switch back to class constant once upstream bug is fixed.
-const categoryProperty = 'categoryProperty'
-const typeProperty = 'typeProperty'
-const roleProperty = 'roleProperty'
-
-/**
- * A schema property.
- */
-export class SchemaProperty extends SchemaEntry {
-  /**
-   * The type of the property.
-   * @type {string}
-   */
-  _propertyType
-
-  constructor(name, propertyType) {
-    super(name)
-    this._propertyType = propertyType
-  }
-
-  /**
-   * Whether this property describes a schema category.
-   * @returns {boolean}
-   */
-  get isCategoryProperty() {
-    return this._propertyType === categoryProperty
-  }
-
-  /**
-   * Whether this property describes a data type.
-   * @returns {boolean}
-   */
-  get isTypeProperty() {
-    return this._propertyType === typeProperty
-  }
-
-  /**
-   * Whether this property describes a role.
-   * @returns {boolean}
-   */
-  get isRoleProperty() {
-    return this._propertyType === roleProperty
-  }
-}
-
-// Pseudo-properties
-
-// TODO: Switch back to class constant once upstream bug is fixed.
-export const nodeProperty = new SchemaProperty('nodeProperty', categoryProperty)
-export const schemaAttributeProperty = new SchemaProperty('schemaAttributeProperty', categoryProperty)
-const stringProperty = new SchemaProperty('stringProperty', typeProperty)
-
-/**
- * A schema attribute.
- */
-export class SchemaAttribute extends SchemaEntry {
-  /**
-   * The categories of elements this schema attribute applies to.
-   * @type {Set<SchemaProperty>}
-   */
-  _categoryProperties
-
-  /**
-   * The data type of this schema attribute.
-   * @type {SchemaProperty}
-   */
-  _typeProperty
-
-  /**
-   * The set of role properties for this schema attribute.
-   * @type {Set<SchemaProperty>}
-   */
-  _roleProperties
-
-  /**
-   * Constructor.
-   *
-   * @param {string} name The name of the schema attribute.
-   * @param {SchemaProperty[]} properties The properties assigned to this schema attribute.
-   */
-  constructor(name, properties) {
-    super(name, new Set(), new Map())
-
-    // Parse properties
-    const categoryProperties = properties.filter((property) => property?.isCategoryProperty)
-    this._categoryProperties = categoryProperties.length === 0 ? new Set([nodeProperty]) : new Set(categoryProperties)
-    const typeProperties = properties.filter((property) => property?.isTypeProperty)
-    this._typeProperty = typeProperties.length === 0 ? stringProperty : typeProperties[0]
-    this._roleProperties = new Set(properties.filter((property) => property?.isRoleProperty))
-  }
-
-  /**
-   * The categories of elements this schema attribute applies to.
-   * @returns {Set<SchemaProperty>|SchemaProperty|undefined}
-   */
-  get categoryProperty() {
-    switch (this._categoryProperties.size) {
-      case 0:
-        return undefined
-      case 1:
-        return Array.from(this._categoryProperties)[0]
-      default:
-        return this._categoryProperties
-    }
-  }
-
-  /**
-   * The data type property of this schema attribute.
-   * @returns {SchemaProperty}
-   */
-  get typeProperty() {
-    return this._typeProperty
-  }
-
-  /**
-   * The set of role properties for this schema attribute.
-   * @returns {Set<SchemaProperty>}
-   */
-  get roleProperties() {
-    return new Set(this._roleProperties)
-  }
-}
-
-/**
- * SchemaEntryWithAttributes class
- */
-export class SchemaEntryWithAttributes extends SchemaEntry {
-  /**
-   * The set of boolean attributes this schema entry has.
-   * @type {Set<SchemaAttribute>}
-   */
-  booleanAttributes
-
-  /**
-   * The collection of value attributes this schema entry has.
-   * @type {Map<SchemaAttribute, *>}
-   */
-  valueAttributes
-
-  /**
-   * The set of boolean attribute names this schema entry has.
-   * @type {Set<string>}
-   */
-  booleanAttributeNames
-
-  /**
-   * The collection of value attribute names this schema entry has.
-   * @type {Map<string, *>}
-   */
-  valueAttributeNames
-
-  constructor(name, booleanAttributes, valueAttributes) {
-    super(name)
-    this.booleanAttributes = booleanAttributes
-    this.valueAttributes = valueAttributes
-    this._parseAttributeNames()
-  }
-
-  /**
-   * Create aliases of the attribute collections keyed on their names.
-   *
-   * @private
-   */
-  _parseAttributeNames() {
-    this.booleanAttributeNames = new Set()
-    for (const attribute of this.booleanAttributes) {
-      this.booleanAttributeNames.add(attribute.name)
-    }
-    this.valueAttributeNames = new Map()
-    for (const [attributeName, value] of this.valueAttributes) {
-      this.valueAttributeNames.set(attributeName.name, value)
-    }
-  }
-
-  /**
-   * Whether this schema entry has this attribute (by name).
-   * @param {string} attributeName The attribute to check for.
-   * @returns {boolean} Whether this schema entry has this attribute.
-   */
-  hasAttribute(attributeName) {
-    return this.booleanAttributeNames.has(attributeName) || this.valueAttributeNames.has(attributeName)
-  }
-
-  /**
-   * Whether this schema entry has this boolean attribute (by name).
-   * @param {string} attributeName The attribute to check for.
-   * @returns {boolean} Whether this schema entry has this attribute.
-   */
-  hasBooleanAttribute(attributeName) {
-    return this.booleanAttributeNames.has(attributeName)
-  }
-
-  /**
-   * Retrieve the value of a value attribute (by name) on this schema entry.
-   * @param {string} attributeName The attribute whose value should be returned.
-   * @param {boolean} alwaysReturnArray Whether to return a singleton array instead of a scalar value.
-   * @returns {*} The value of the attribute.
-   */
-  getAttributeValue(attributeName, alwaysReturnArray = false) {
-    return SchemaEntryWithAttributes._getMapArrayValue(this.valueAttributeNames, attributeName, alwaysReturnArray)
-  }
-
-  /**
-   * Return a map value, with a scalar being returned in lieu of a singleton array if alwaysReturnArray is false.
-   *
-   * @template K,V
-   * @param {Map<K,V>} map The map to search.
-   * @param {K} key A key in the map.
-   * @param {boolean} alwaysReturnArray Whether to return a singleton array instead of a scalar value.
-   * @returns {V|V[]} The value for the key in the passed map.
-   * @private
-   */
-  static _getMapArrayValue(map, key, alwaysReturnArray) {
-    const value = map.get(key)
-    if (!alwaysReturnArray && Array.isArray(value) && value.length === 1) {
-      return value[0]
-    } else {
-      return value
-    }
-  }
-}
-
-/**
- * SchemaUnit class
- */
-export class SchemaUnit extends SchemaEntryWithAttributes {
-  /**
-   * The legal derivatives of this unit.
-   * @type {string[]}
-   */
-  _derivativeUnits
-
-  /**
-   * Constructor.
-   *
-   * @param {string} name The name of the unit.
-   * @param {Set<SchemaAttribute>} booleanAttributes This unit's boolean attributes.
-   * @param {Map<SchemaAttribute, *>} valueAttributes This unit's key-value attributes.
-   * @param {SchemaEntryManager<SchemaUnitModifier>} unitModifiers The collection of unit modifiers.
-   */
-  constructor(name, booleanAttributes, valueAttributes, unitModifiers) {
-    super(name, booleanAttributes, valueAttributes)
-
-    this._derivativeUnits = [name]
-    if (!this.isSIUnit) {
-      this._pushPluralUnit()
-      return
-    }
-    if (this.isUnitSymbol) {
-      const SIUnitSymbolModifiers = unitModifiers.getEntriesWithBooleanAttribute('SIUnitSymbolModifier')
-      for (const modifierName of SIUnitSymbolModifiers.keys()) {
-        this._derivativeUnits.push(modifierName + name)
-      }
-    } else {
-      const SIUnitModifiers = unitModifiers.getEntriesWithBooleanAttribute('SIUnitModifier')
-      const pluralUnit = this._pushPluralUnit()
-      for (const modifierName of SIUnitModifiers.keys()) {
-        this._derivativeUnits.push(modifierName + name, modifierName + pluralUnit)
-      }
-    }
-  }
-
-  _pushPluralUnit() {
-    if (!this.isUnitSymbol) {
-      const pluralUnit = pluralize.plural(this._name)
-      this._derivativeUnits.push(pluralUnit)
-      return pluralUnit
-    }
-    return null
-  }
-
-  *derivativeUnits() {
-    for (const unit of this._derivativeUnits) {
-      yield unit
-    }
-  }
-
-  get isPrefixUnit() {
-    return this.hasAttribute('unitPrefix')
-  }
-
-  get isSIUnit() {
-    return this.hasAttribute('SIUnit')
-  }
-
-  get isUnitSymbol() {
-    return this.hasAttribute('unitSymbol')
-  }
-
-  /**
-   * Determine if a value has this unit.
-   *
-   * @param {string} value -- either the whole value or the part after a blank (if not a prefix unit)
-   * @returns {boolean} Whether the value has these units.
-   */
-  validateUnit(value) {
-    if (value == null || value === '') {
-      return false
-    }
-    if (this.isPrefixUnit) {
-      return value.startsWith(this.name)
-    }
-
-    for (const dUnit of this.derivativeUnits()) {
-      if (value === dUnit) {
-        return true
-      }
-    }
-    return false
-  }
-}
-
-/**
- * SchemaUnitClass class
- */
-export class SchemaUnitClass extends SchemaEntryWithAttributes {
-  /**
-   * The units for this unit class.
-   * @type {Map<string, SchemaUnit>}
-   */
-  _units
-
-  /**
-   * Constructor.
-   *
-   * @param {string} name The name of this unit class.
-   * @param {Set<SchemaAttribute>} booleanAttributes The boolean attributes for this unit class.
-   * @param {Map<SchemaAttribute, *>} valueAttributes The value attributes for this unit class.
-   * @param {Map<string, SchemaUnit>} units The units for this unit class.
-   */
-  constructor(name, booleanAttributes, valueAttributes, units) {
-    super(name, booleanAttributes, valueAttributes)
-    this._units = units
-  }
-
-  /**
-   * Get the units for this unit class.
-   * @returns {Map<string, SchemaUnit>}
-   */
-  get units() {
-    return new Map(this._units)
-  }
-
-  /**
-   * Get the default unit for this unit class.
-   * @returns {SchemaUnit}
-   */
-  get defaultUnit() {
-    return this._units.get(this.getAttributeValue('defaultUnits'))
-  }
-
-  /**
-   * Extracts the Unit class and remainder
-   * @returns {Array} [SchemaUnit, string, string] containing unit class, unit string, and value string
-   */
-  extractUnit(value) {
-    let actualUnit = null // The Unit class of the value
-    let actualValueString = null // The actual value part of the value
-    let actualUnitString = null
-    let lastPart = null
-    let firstPart = null
-    const index = value.indexOf(' ')
-    if (index !== -1) {
-      lastPart = value.slice(index + 1)
-      firstPart = value.slice(0, index)
-    } else {
-      // no blank -- there are no units
-      return [null, null, value]
-    }
-    actualValueString = firstPart
-    actualUnitString = lastPart
-    for (const unit of this._units.values()) {
-      if (!unit.isPrefixUnit && unit.validateUnit(lastPart)) {
-        // Checking if it is non-prefixed unit
-        actualValueString = firstPart
-        actualUnitString = lastPart
-        actualUnit = unit
-        break
-      } else if (!unit.isPrefixUnit) {
-        continue
-      }
-      if (unit.validateUnit(firstPart)) {
-        actualUnit = unit
-        actualValueString = value.substring(unit.name.length + 1)
-        actualUnitString = unit.name
-        break
-      }
-      // If it got here, can only be a prefix Unit
-    }
-    return [actualUnit, actualUnitString, actualValueString]
-  }
-}
-
-/**
- * SchemaUnitModifier class
- */
-export class SchemaUnitModifier extends SchemaEntryWithAttributes {
-  constructor(name, booleanAttributes, valueAttributes) {
-    super(name, booleanAttributes, valueAttributes)
-  }
-}
-
-/**
- * SchemaValueClass class
- */
-export class SchemaValueClass extends SchemaEntryWithAttributes {
-  /**
-   * The character class-based regular expression.
-   * @type {RegExp}
-   * @private
-   */
-  _charClassRegex
-  /**
-   * The "word form"-based regular expression.
-   * @type {RegExp}
-   * @private
-   */
-  _wordRegex
-
-  /**
-   * Constructor.
-   *
-   * @param {string} name The name of this value class.
-   * @param {Set<SchemaAttribute>} booleanAttributes The boolean attributes for this value class.
-   * @param {Map<SchemaAttribute, *>} valueAttributes The value attributes for this value class.
-   * @param {RegExp} charClassRegex The character class-based regular expression for this value class.
-   * @param {RegExp} wordRegex The "word form"-based regular expression for this value class.
-   */
-
-  constructor(name, booleanAttributes, valueAttributes, charClassRegex, wordRegex) {
-    super(name, booleanAttributes, valueAttributes)
-    this._charClassRegex = charClassRegex
-    this._wordRegex = wordRegex
-  }
-
-  /**
-   * Determine if a value is valid according to this value class.
-   *
-   * @param {string} value A HED value.
-   * @returns {boolean} Whether the value conforms to this value class.
-   */
-  validateValue(value) {
-    return this._wordRegex.test(value) && this._charClassRegex.test(value)
-  }
-}
-
-/**
- * A tag in a HED schema.
- */
-export class SchemaTag extends SchemaEntryWithAttributes {
-  /**
-   * This tag's parent tag.
-   * @type {SchemaTag}
-   * @private
-   */
-  _parent
-
-  /**
-   * This tag's unit classes.
-   * @type {SchemaUnitClass[]}
-   * @private
-   */
-  _unitClasses
-
-  /**
-   * This tag's value-classes
-   * @type {SchemaValueClass[]}
-   * @private
-   */
-  _valueClasses
-
-  /**
-   * This tag's value-taking child.
-   * @type {SchemaValueTag}
-   * @private
-   */
-  _valueTag
-
-  /**
-   * Constructor.
-   *
-   * @param {string} name The name of this tag.
-   * @param {Set<SchemaAttribute>} booleanAttributes The boolean attributes for this tag.
-   * @param {Map<SchemaAttribute, *>} valueAttributes The value attributes for this tag.
-   * @param {SchemaUnitClass[]} unitClasses The unit classes for this tag.
-   * @param {SchemaValueClass[]} valueClasses The value classes for this tag.
-   */
-  constructor(name, booleanAttributes, valueAttributes, unitClasses, valueClasses) {
-    super(name, booleanAttributes, valueAttributes)
-    this._unitClasses = unitClasses ?? []
-    this._valueClasses = valueClasses ?? []
-  }
-
-  /**
-   * This tag's unit classes.
-   * @type {SchemaUnitClass[]}
-   */
-  get unitClasses() {
-    return this._unitClasses.slice() // The slice prevents modification
-  }
-
-  /**
-   * Whether this tag has any unit classes.
-   * @returns {boolean}
-   */
-  get hasUnitClasses() {
-    return this._unitClasses.length !== 0
-  }
-
-  /**
-   * This tag's value classes.
-   * @type {SchemaValueClass[]}
-   */
-  get valueClasses() {
-    return this._valueClasses.slice()
-  }
-
-  /**
-   * This tag's value-taking child tag.
-   * @returns {SchemaValueTag}
-   */
-  get valueTag() {
-    return this._valueTag
-  }
-
-  /**
-   * Set the tag's value-taking child tag.
-   * @param {SchemaValueTag} newValueTag The new value-taking child tag.
-   */
-  set valueTag(newValueTag) {
-    if (!this._isPrivateFieldSet(this._valueTag, 'value tag')) {
-      this._valueTag = newValueTag
-    }
-  }
-
-  /**
-   * This tag's parent tag.
-   * @type {SchemaTag}
-   */
-  get parent() {
-    return this._parent
-  }
-
-  /**
-   * Set the tag's parent tag.
-   * @param {SchemaTag} newParent The new parent tag.
-   */
-  set parent(newParent) {
-    if (!this._isPrivateFieldSet(this._parent, 'parent')) {
-      this._parent = newParent
-    }
-  }
-
-  /**
-   * Throw an error if a private field is already set.
-   *
-   * @param {*} field The field being set.
-   * @param {string} fieldName The name of the field (for error reporting).
-   * @return {boolean} Whether the field is set (never returns true).
-   * @throws {IssueError} If the field is already set.
-   * @private
-   */
-  _isPrivateFieldSet(field, fieldName) {
-    if (field !== undefined) {
-      IssueError.generateAndThrowInternalError(
-        `Attempted to set ${fieldName} for schema tag ${this.longName} when it already has one.`,
-      )
-    }
-    return false
-  }
-
-  /**
-   * Return all of this tag's ancestors.
-   * @returns {Array}
-   */
-  get ancestors() {
-    return this._memoize('ancestors', () => {
-      if (this.parent) {
-        return [this.parent, ...this.parent.ancestors]
-      }
-      return []
-    })
-  }
-
-  /**
-   * This tag's long name.
-   * @returns {string}
-   */
-  get longName() {
-    const nameParts = this.ancestors.map((parentTag) => parentTag.name)
-    nameParts.reverse().push(this.name)
-    return nameParts.join('/')
-  }
-
-  /**
-   * Extend this tag's short name.
-   *
-   * @param {string} extension The extension.
-   * @returns {string} The extended short string.
-   */
-  extend(extension) {
-    if (extension) {
-      return this.name + '/' + extension
-    } else {
-      return this.name
-    }
-  }
-
-  /**
-   * Extend this tag's long name.
-   *
-   * @param {string} extension The extension.
-   * @returns {string} The extended long string.
-   */
-  longExtend(extension) {
-    if (extension) {
-      return this.longName + '/' + extension
-    } else {
-      return this.longName
-    }
-  }
-}
-
-/**
- * A value-taking tag in a HED schema.
- */
-export class SchemaValueTag extends SchemaTag {
-  /**
-   * This tag's long name.
-   * @returns {string}
-   */
-  get longName() {
-    const nameParts = this.ancestors.map((parentTag) => parentTag.name)
-    nameParts.reverse().push('#')
-    return nameParts.join('/')
-  }
-
-  /**
-   * Extend this tag's short name.
-   *
-   * @param {string} extension The extension.
-   * @returns {string} The extended short string.
-   */
-  extend(extension) {
-    return this.parent.extend(extension)
-  }
-
-  /**
-   * Extend this tag's long name.
-   *
-   * @param {string} extension The extension.
-   * @returns {string} The extended long string.
-   */
-  longExtend(extension) {
-    return this.parent.longExtend(extension)
-  }
-}
diff --git a/src/schema/entries.ts b/src/schema/entries.ts
new file mode 100644
index 00000000..e0d4a679
--- /dev/null
+++ b/src/schema/entries.ts
@@ -0,0 +1,743 @@
+/** This module holds the schema entity classes.
+ * @module schema/entries
+ */
+import pluralize from 'pluralize'
+pluralize.addUncountableRule('hertz')
+
+import { IssueError } from '../issues/issues'
+import type SchemaParser from './parser'
+
+/**
+ * SchemaEntries class
+ */
+export class SchemaEntries {
+  /**
+   * The schema's properties.
+   */
+  readonly properties: SchemaEntryManager<SchemaProperty>
+
+  /**
+   * The schema's attributes.
+   */
+  readonly attributes: SchemaEntryManager<SchemaAttribute>
+
+  /**
+   * The schema's value classes.
+   */
+  readonly valueClasses: SchemaEntryManager<SchemaValueClass>
+
+  /**
+   * The schema's unit classes.
+   */
+  readonly unitClasses: SchemaEntryManager<SchemaUnitClass>
+
+  /**
+   * The schema's unit modifiers.
+   */
+  readonly unitModifiers: SchemaEntryManager<SchemaUnitModifier>
+
+  /**
+   * The schema's tags.
+   */
+  tags: SchemaEntryManager<SchemaTag>
+
+  /**
+   * Constructor.
+   * @param schemaParser A constructed schema parser.
+   */
+  constructor(schemaParser: SchemaParser) {
+    this.properties = new SchemaEntryManager(schemaParser.properties)
+    this.attributes = new SchemaEntryManager(schemaParser.attributes)
+    this.valueClasses = schemaParser.valueClasses
+    this.unitClasses = schemaParser.unitClasses
+    this.unitModifiers = schemaParser.unitModifiers
+    this.tags = schemaParser.tags
+  }
+}
+
+/**
+ * A manager of {@link SchemaEntry} objects.
+ */
+export class SchemaEntryManager<T extends SchemaEntry> {
+  /**
+   * The definitions managed by this entry manager.
+   */
+  private readonly _definitions: Map<string, T>
+
+  /**
+   * Constructor.
+   *
+   * @param definitions A map of schema entry definitions.
+   */
+  constructor(definitions: Map<string, T>) {
+    this._definitions = definitions
+  }
+
+  /**
+   * Return a copy of the managed definition map.
+   */
+  public get definitions(): Map<string, T> {
+    return new Map(this._definitions)
+  }
+
+  /**
+   * Iterator over the entry manager's entries.
+   */
+  public [Symbol.iterator](): MapIterator<[string, T]> {
+    return this._definitions.entries()
+  }
+
+  /**
+   * Iterator over the entry manager's keys.
+   */
+  public keys(): MapIterator<string> {
+    return this._definitions.keys()
+  }
+
+  /**
+   * Iterator over the entry manager's keys.
+   */
+  public values(): MapIterator<T> {
+    return this._definitions.values()
+  }
+
+  /**
+   * Determine whether the entry with the given name exists.
+   *
+   * @param name The name of the entry.
+   * @return Whether the entry exists.
+   */
+  public hasEntry(name: string): boolean {
+    return this._definitions.has(name)
+  }
+
+  /**
+   * Get the entry with the given name.
+   *
+   * @param name The name of the entry to retrieve.
+   * @returns The entry with that name.
+   */
+  public getEntry(name: string): T {
+    return this._definitions.get(name)
+  }
+
+  /**
+   * Get a collection of entries with the given boolean attribute.
+   *
+   * @param booleanAttributeName The name of boolean attribute to filter on.
+   * @returns A subset of the managed collection with the given boolean attribute.
+   */
+  public getEntriesWithBooleanAttribute(booleanAttributeName: string): Map<string, T> {
+    return this.filter(([, v]) => {
+      return v.hasBooleanAttribute(booleanAttributeName)
+    })
+  }
+
+  /**
+   * Filter the map underlying this manager.
+   *
+   * @param fn The filtering function.
+   * @returns A subset of the managed collection satisfying the filter.
+   */
+  public filter(fn: (entry: [string, T]) => boolean): Map<string, T> {
+    const pairArray = Array.from(this._definitions.entries())
+    return new Map(pairArray.filter((entry) => fn(entry)))
+  }
+
+  /**
+   * The number of entries in this collection.
+   *
+   * @returns The number of entries in this collection.
+   */
+  public get length(): number {
+    return this._definitions.size
+  }
+}
+
+/**
+ * SchemaEntry class
+ */
+export class SchemaEntry {
+  /**
+   * The name of this schema entry.
+   */
+  private readonly _name: string
+
+  constructor(name: string) {
+    this._name = name
+  }
+
+  /**
+   * The name of this schema entry.
+   */
+  public get name(): string {
+    return this._name
+  }
+
+  /**
+   * Whether this schema entry has this attribute (by name).
+   *
+   * This method is a stub to be overridden in {@link SchemaEntryWithAttributes}.
+   *
+   * @param attributeName The attribute to check for.
+   * @returns Whether this schema entry has this attribute.
+   */
+  // eslint-disable-next-line no-unused-vars
+  public hasBooleanAttribute(attributeName: string): boolean {
+    return false
+  }
+}
+
+/**
+ * A schema property.
+ */
+export class SchemaProperty extends SchemaEntry {}
+
+/**
+ * A schema attribute.
+ */
+export class SchemaAttribute extends SchemaEntry {
+  /**
+   * The properties assigned to this schema attribute.
+   */
+  readonly _properties: Set<SchemaProperty>
+
+  /**
+   * Constructor.
+   *
+   * @param name The name of the schema attribute.
+   * @param properties The properties assigned to this schema attribute.
+   */
+  constructor(name: string, properties: Set<SchemaProperty>) {
+    super(name)
+    this._properties = properties
+  }
+
+  /**
+   * The collection of properties for this schema attribute.
+   */
+  public get properties(): Set<SchemaProperty> {
+    return new Set(this._properties)
+  }
+}
+
+/**
+ * SchemaEntryWithAttributes class
+ */
+export class SchemaEntryWithAttributes extends SchemaEntry {
+  /**
+   * The set of boolean attributes this schema entry has.
+   */
+  readonly booleanAttributes: Set<SchemaAttribute>
+
+  /**
+   * The collection of value attributes this schema entry has.
+   */
+  readonly valueAttributes: Map<SchemaAttribute, string[]>
+
+  /**
+   * The set of boolean attribute names this schema entry has.
+   */
+  readonly booleanAttributeNames: Set<string>
+
+  /**
+   * The collection of value attribute names this schema entry has.
+   */
+  readonly valueAttributeNames: Map<string, string[]>
+
+  constructor(name: string, booleanAttributes: Set<SchemaAttribute>, valueAttributes: Map<SchemaAttribute, string[]>) {
+    super(name)
+    this.booleanAttributes = booleanAttributes
+    this.valueAttributes = valueAttributes
+    this.booleanAttributeNames = new Set()
+    for (const attribute of this.booleanAttributes) {
+      this.booleanAttributeNames.add(attribute.name)
+    }
+    this.valueAttributeNames = new Map()
+    for (const [attributeName, value] of this.valueAttributes) {
+      this.valueAttributeNames.set(attributeName.name, value)
+    }
+  }
+
+  /**
+   * Whether this schema entry has this attribute (by name).
+   * @param attributeName The attribute to check for.
+   * @returns Whether this schema entry has this attribute.
+   */
+  public hasAttribute(attributeName: string): boolean {
+    return this.booleanAttributeNames.has(attributeName) || this.valueAttributeNames.has(attributeName)
+  }
+
+  /**
+   * Whether this schema entry has this boolean attribute (by name).
+   * @param attributeName The attribute to check for.
+   * @returns Whether this schema entry has this attribute.
+   */
+  public hasBooleanAttribute(attributeName: string): boolean {
+    return this.booleanAttributeNames.has(attributeName)
+  }
+
+  /**
+   * Retrieve a single value of a value attribute (by name) on this schema entry, throwing an error if more than one value exists.
+   * @param attributeName The attribute whose value should be returned.
+   * @returns The value of the attribute.
+   * @throws {IssueError} If the attribute has more than one value.
+   */
+  public getSingleAttributeValue(attributeName: string): string | undefined {
+    const attributeValues = this.valueAttributeNames.get(attributeName)
+    if (attributeValues === undefined) {
+      return undefined
+    } else if (attributeValues.length > 1) {
+      IssueError.generateAndThrowInternalError(
+        `More than one value exists for attribute ${attributeName}, when only one value was expected.`,
+      )
+    }
+    return attributeValues[0]
+  }
+
+  /**
+   * Retrieve all values of a value attribute (by name) on this schema entry.
+   * @param attributeName The attribute whose value should be returned.
+   * @returns The values of the attribute.
+   */
+  public getAttributeValues(attributeName: string): string[] | undefined {
+    return this.valueAttributeNames.get(attributeName)
+  }
+}
+
+/**
+ * SchemaUnit class
+ */
+export class SchemaUnit extends SchemaEntryWithAttributes {
+  /**
+   * The legal derivatives of this unit.
+   */
+  private readonly _derivativeUnits: string[]
+
+  /**
+   * Constructor.
+   *
+   * @param name The name of the unit.
+   * @param booleanAttributes This unit's boolean attributes.
+   * @param valueAttributes This unit's key-value attributes.
+   * @param unitModifiers The collection of unit modifiers.
+   */
+  constructor(
+    name: string,
+    booleanAttributes: Set<SchemaAttribute>,
+    valueAttributes: Map<SchemaAttribute, string[]>,
+    unitModifiers: SchemaEntryManager<SchemaUnitModifier>,
+  ) {
+    super(name, booleanAttributes, valueAttributes)
+
+    this._derivativeUnits = [name]
+    if (!this.isSIUnit) {
+      this._pushPluralUnit()
+      return
+    }
+    if (this.isUnitSymbol) {
+      const SIUnitSymbolModifiers = unitModifiers.getEntriesWithBooleanAttribute('SIUnitSymbolModifier')
+      for (const modifierName of SIUnitSymbolModifiers.keys()) {
+        this._derivativeUnits.push(modifierName + name)
+      }
+    } else {
+      const SIUnitModifiers = unitModifiers.getEntriesWithBooleanAttribute('SIUnitModifier')
+      const pluralUnit = this._pushPluralUnit()
+      for (const modifierName of SIUnitModifiers.keys()) {
+        this._derivativeUnits.push(modifierName + name, modifierName + pluralUnit)
+      }
+    }
+  }
+
+  private _pushPluralUnit(): string | null {
+    if (!this.isUnitSymbol) {
+      const pluralUnit = pluralize.plural(this.name)
+      this._derivativeUnits.push(pluralUnit)
+      return pluralUnit
+    }
+    return null
+  }
+
+  public *derivativeUnits(): Generator<string, void, void> {
+    for (const unit of this._derivativeUnits) {
+      yield unit
+    }
+  }
+
+  public get isPrefixUnit(): boolean {
+    return this.hasAttribute('unitPrefix')
+  }
+
+  public get isSIUnit(): boolean {
+    return this.hasAttribute('SIUnit')
+  }
+
+  public get isUnitSymbol(): boolean {
+    return this.hasAttribute('unitSymbol')
+  }
+
+  /**
+   * Determine if a value has this unit.
+   *
+   * @param value Either the whole value or the part after a blank (if not a prefix unit)
+   * @returns Whether the value has these units.
+   */
+  public validateUnit(value: string): boolean {
+    if (value == null || value === '') {
+      return false
+    }
+    if (this.isPrefixUnit) {
+      return value.startsWith(this.name)
+    }
+
+    for (const dUnit of this.derivativeUnits()) {
+      if (value === dUnit) {
+        return true
+      }
+    }
+    return false
+  }
+}
+
+/**
+ * SchemaUnitClass class
+ */
+export class SchemaUnitClass extends SchemaEntryWithAttributes {
+  /**
+   * The units for this unit class.
+   * @type {Map<string, SchemaUnit>}
+   */
+  private readonly _units: Map<string, SchemaUnit>
+
+  /**
+   * Constructor.
+   *
+   * @param name The name of this unit class.
+   * @param booleanAttributes The boolean attributes for this unit class.
+   * @param valueAttributes The value attributes for this unit class.
+   * @param units The units for this unit class.
+   */
+  constructor(
+    name: string,
+    booleanAttributes: Set<SchemaAttribute>,
+    valueAttributes: Map<SchemaAttribute, string[]>,
+    units: Map<string, SchemaUnit>,
+  ) {
+    super(name, booleanAttributes, valueAttributes)
+    this._units = units
+  }
+
+  /**
+   * Get the units for this unit class.
+   */
+  public get units(): Map<string, SchemaUnit> {
+    return new Map(this._units)
+  }
+
+  /**
+   * Get the default unit for this unit class.
+   */
+  public get defaultUnit(): SchemaUnit | undefined {
+    return this._units.get(this.getSingleAttributeValue('defaultUnits'))
+  }
+
+  /**
+   * Extracts the Unit class and remainder
+   * @returns Unit class, unit string, and value string
+   */
+  public extractUnit(value: string): [SchemaUnit | null, string | null, string] {
+    let actualUnit = null // The Unit class of the value
+    let actualValueString = null // The actual value part of the value
+    let actualUnitString = null
+    let lastPart = null
+    let firstPart = null
+    const index = value.indexOf(' ')
+    if (index !== -1) {
+      lastPart = value.slice(index + 1)
+      firstPart = value.slice(0, index)
+    } else {
+      // no blank -- there are no units
+      return [null, null, value]
+    }
+    actualValueString = firstPart
+    actualUnitString = lastPart
+    for (const unit of this._units.values()) {
+      if (!unit.isPrefixUnit && unit.validateUnit(lastPart)) {
+        // Checking if it is non-prefixed unit
+        actualValueString = firstPart
+        actualUnitString = lastPart
+        actualUnit = unit
+        break
+      } else if (!unit.isPrefixUnit) {
+        continue
+      }
+      if (unit.validateUnit(firstPart)) {
+        actualUnit = unit
+        actualValueString = value.substring(unit.name.length + 1)
+        actualUnitString = unit.name
+        break
+      }
+      // If it got here, can only be a prefix Unit
+    }
+    return [actualUnit, actualUnitString, actualValueString]
+  }
+}
+
+/**
+ * SchemaUnitModifier class
+ */
+export class SchemaUnitModifier extends SchemaEntryWithAttributes {}
+
+/**
+ * SchemaValueClass class
+ */
+export class SchemaValueClass extends SchemaEntryWithAttributes {
+  /**
+   * The character class-based regular expression.
+   */
+  private readonly _charClassRegex: RegExp
+  /**
+   * The "word form"-based regular expression.
+   */
+  private readonly _wordRegex: RegExp
+
+  /**
+   * Constructor.
+   *
+   * @param name The name of this value class.
+   * @param booleanAttributes The boolean attributes for this value class.
+   * @param valueAttributes The value attributes for this value class.
+   * @param charClassRegex The character class-based regular expression for this value class.
+   * @param wordRegex The "word form"-based regular expression for this value class.
+   */
+
+  constructor(
+    name: string,
+    booleanAttributes: Set<SchemaAttribute>,
+    valueAttributes: Map<SchemaAttribute, string[]>,
+    charClassRegex: RegExp,
+    wordRegex: RegExp,
+  ) {
+    super(name, booleanAttributes, valueAttributes)
+    this._charClassRegex = charClassRegex
+    this._wordRegex = wordRegex
+  }
+
+  /**
+   * Determine if a value is valid according to this value class.
+   *
+   * @param value A HED value.
+   * @returns Whether the value conforms to this value class.
+   */
+  public validateValue(value: string): boolean {
+    return this._wordRegex.test(value) && this._charClassRegex.test(value)
+  }
+}
+
+/**
+ * A tag in a HED schema.
+ */
+export class SchemaTag extends SchemaEntryWithAttributes {
+  /**
+   * This tag's parent tag.
+   */
+  private _parent: SchemaTag
+
+  /**
+   * This tag's unit classes.
+   */
+  private readonly _unitClasses: SchemaUnitClass[]
+
+  /**
+   * This tag's value-classes
+   */
+  private readonly _valueClasses: SchemaValueClass[]
+
+  /**
+   * This tag's value-taking child.
+   */
+  private _valueTag: SchemaValueTag
+
+  /**
+   * This tag's ancestor tags.
+   */
+  #ancestors: SchemaTag[]
+
+  /**
+   * Constructor.
+   *
+   * @param name The name of this tag.
+   * @param booleanAttributes The boolean attributes for this tag.
+   * @param valueAttributes The value attributes for this tag.
+   * @param unitClasses The unit classes for this tag.
+   * @param valueClasses The value classes for this tag.
+   */
+  constructor(
+    name: string,
+    booleanAttributes: Set<SchemaAttribute>,
+    valueAttributes: Map<SchemaAttribute, string[]>,
+    unitClasses: SchemaUnitClass[],
+    valueClasses: SchemaValueClass[],
+  ) {
+    super(name, booleanAttributes, valueAttributes)
+    this._unitClasses = unitClasses ?? []
+    this._valueClasses = valueClasses ?? []
+  }
+
+  /**
+   * This tag's unit classes.
+   */
+  public get unitClasses(): SchemaUnitClass[] {
+    return this._unitClasses.slice() // The slice prevents modification
+  }
+
+  /**
+   * Whether this tag has any unit classes.
+   */
+  public get hasUnitClasses(): boolean {
+    return this._unitClasses.length !== 0
+  }
+
+  /**
+   * This tag's value classes.
+   */
+  public get valueClasses(): SchemaValueClass[] {
+    return this._valueClasses.slice()
+  }
+
+  /**
+   * This tag's value-taking child tag.
+   */
+  public get valueTag(): SchemaValueTag {
+    return this._valueTag
+  }
+
+  /**
+   * Set the tag's value-taking child tag.
+   * @param newValueTag The new value-taking child tag.
+   */
+  public set valueTag(newValueTag: SchemaValueTag) {
+    if (!this._isPrivateFieldSet(this._valueTag, 'value tag')) {
+      this._valueTag = newValueTag
+    }
+  }
+
+  /**
+   * This tag's parent tag.
+   */
+  public get parent(): SchemaTag {
+    return this._parent
+  }
+
+  /**
+   * Set the tag's parent tag.
+   * @param newParent The new parent tag.
+   */
+  public set parent(newParent: SchemaTag) {
+    if (!this._isPrivateFieldSet(this._parent, 'parent')) {
+      this._parent = newParent
+    }
+  }
+
+  /**
+   * Throw an error if a private field is already set.
+   *
+   * @param field The field being set.
+   * @param fieldName The name of the field (for error reporting).
+   * @return Whether the field is set (never returns true).
+   * @throws {IssueError} If the field is already set.
+   * @private
+   */
+  private _isPrivateFieldSet(field: any, fieldName: string): boolean {
+    if (field !== undefined) {
+      IssueError.generateAndThrowInternalError(
+        `Attempted to set ${fieldName} for schema tag ${this.longName} when it already has one.`,
+      )
+    }
+    return false
+  }
+
+  /**
+   * Return all of this tag's ancestors.
+   */
+  public get ancestors(): SchemaTag[] {
+    if (this.#ancestors !== undefined) {
+      return this.#ancestors
+    }
+    this.#ancestors = this.parent ? [this.parent, ...this.parent.ancestors] : []
+    return this.#ancestors
+  }
+
+  /**
+   * This tag's long name.
+   */
+  public get longName(): string {
+    const nameParts = this.ancestors.map((parentTag) => parentTag.name)
+    nameParts.reverse()
+    nameParts.push(this.name)
+    return nameParts.join('/')
+  }
+
+  /**
+   * Extend this tag's short name.
+   *
+   * @param extension The extension.
+   * @returns The extended short string.
+   */
+  public extend(extension: string): string {
+    if (extension) {
+      return this.name + '/' + extension
+    } else {
+      return this.name
+    }
+  }
+
+  /**
+   * Extend this tag's long name.
+   *
+   * @param extension The extension.
+   * @returns The extended long string.
+   */
+  public longExtend(extension: string): string {
+    if (extension) {
+      return this.longName + '/' + extension
+    } else {
+      return this.longName
+    }
+  }
+}
+
+/**
+ * A value-taking tag in a HED schema.
+ */
+export class SchemaValueTag extends SchemaTag {
+  /**
+   * This tag's long name.
+   */
+  public get longName(): string {
+    const nameParts = this.ancestors.map((parentTag) => parentTag.name)
+    nameParts.reverse()
+    nameParts.push('#')
+    return nameParts.join('/')
+  }
+
+  /**
+   * Extend this tag's short name.
+   *
+   * @param extension The extension.
+   * @returns The extended short string.
+   */
+  public extend(extension: string): string {
+    return this.parent.extend(extension)
+  }
+
+  /**
+   * Extend this tag's long name.
+   *
+   * @param extension The extension.
+   * @returns The extended long string.
+   */
+  public longExtend(extension: string): string {
+    return this.parent.longExtend(extension)
+  }
+}
diff --git a/src/schema/init.js b/src/schema/init.ts
similarity index 62%
rename from src/schema/init.js
rename to src/schema/init.ts
index 83fc916e..c7ba0cc0 100644
--- a/src/schema/init.js
+++ b/src/schema/init.ts
@@ -4,50 +4,21 @@
 import zip from 'lodash/zip'
 
 import loadSchema from './loader'
-import { setParent } from '../utils/xml'
-
 import SchemaParser from './parser'
 import PartneredSchemaMerger from './schemaMerger'
-import { Schema, Schemas } from './containers'
+import { HedSchema, PrimarySchema, HedSchemas } from './containers'
 import { IssueError } from '../issues/issues'
 import { splitStringTrimAndRemoveBlanks } from '../utils/string'
 import { SchemasSpec } from './specs'
-
-/**
- * Build a single schema container object from an XML file.
- *
- * @param {Object} xmlData The schema's XML data
- * @returns {Schema} The HED schema object.
- */
-const buildSchemaObject = function (xmlData) {
-  const rootElement = xmlData.HED
-  setParent(rootElement, null)
-  const schemaEntries = new SchemaParser(rootElement).parse()
-  return new Schema(xmlData, schemaEntries)
-}
-
-/**
- * Build a single merged schema container object from one or more XML files.
- *
- * @param {Object[]} xmlData The schemas' XML data.
- * @returns {Schema} The HED schema object.
- */
-const buildSchemaObjects = function (xmlData) {
-  const schemas = xmlData.map((data) => buildSchemaObject(data))
-  if (schemas.length === 1) {
-    return schemas[0]
-  }
-  const partneredSchemaMerger = new PartneredSchemaMerger(schemas)
-  return partneredSchemaMerger.mergeSchemas()
-}
+import { type HedSchemaXMLObject } from './xmlType'
 
 /**
  * Build a schema collection object from a schema specification.
  *
- * @param {SchemasSpec} schemaSpecs The description of which schemas to use.
- * @returns {Promise<Schemas>} The schema container object and any issues found.
+ * @param schemaSpecs The description of which schemas to use.
+ * @returns The schema container object and any issues found.
  */
-export async function buildSchemas(schemaSpecs) {
+export async function buildSchemas(schemaSpecs: SchemasSpec): Promise<HedSchemas> {
   const schemaPrefixes = Array.from(schemaSpecs.data.keys())
   /* Data format example:
    * [[xmlData, ...], [xmlData, xmlData, ...], ...] */
@@ -59,19 +30,45 @@ export async function buildSchemas(schemaSpecs) {
   )
   const schemaObjects = schemaXmlData.map(buildSchemaObjects)
   const schemas = new Map(zip(schemaPrefixes, schemaObjects))
-  return new Schemas(schemas)
+  return new HedSchemas(schemas)
 }
 
 /**
  * Build HED schemas from a version specification string.
  *
- * @param {string} hedVersionString The HED version specification string (can contain comma-separated versions).
- * @returns {Promise<Schemas>} A Promise that resolves to the built schemas.
+ * @param hedVersionString The HED version specification string (can contain comma-separated versions).
+ * @returns A Promise that resolves to the built schemas.
  * @throws {IssueError} If the schema specification is invalid or schemas cannot be built.
  */
-export async function buildSchemasFromVersion(hedVersionString) {
+export async function buildSchemasFromVersion(hedVersionString?: string): Promise<HedSchemas> {
   hedVersionString ??= ''
   const hedVersionSpecStrings = splitStringTrimAndRemoveBlanks(hedVersionString, ',')
   const hedVersionSpecs = SchemasSpec.parseVersionSpecs(hedVersionSpecStrings)
   return buildSchemas(hedVersionSpecs)
 }
+
+/**
+ * Build a single merged schema container object from one or more XML files.
+ *
+ * @param xmlData The schemas' XML data.
+ * @returns The HED schema object.
+ */
+function buildSchemaObjects(xmlData: HedSchemaXMLObject[]): HedSchema {
+  const schemas = xmlData.map((data) => buildSchemaObject(data))
+  if (schemas.length === 1) {
+    return schemas[0]
+  }
+  const partneredSchemaMerger = new PartneredSchemaMerger(schemas)
+  return partneredSchemaMerger.mergeSchemas()
+}
+
+/**
+ * Build a single schema container object from an XML file.
+ *
+ * @param xmlData The schema's XML data
+ * @returns The HED schema object.
+ */
+function buildSchemaObject(xmlData: HedSchemaXMLObject): PrimarySchema {
+  const schemaEntries = new SchemaParser(xmlData.HED).parse()
+  return new PrimarySchema(xmlData, schemaEntries)
+}
diff --git a/src/schema/loader.js b/src/schema/loader.ts
similarity index 61%
rename from src/schema/loader.js
rename to src/schema/loader.ts
index 3a621afc..ca59945f 100644
--- a/src/schema/loader.js
+++ b/src/schema/loader.ts
@@ -2,21 +2,22 @@
  * @module schema/loader
  * */
 
-/* Imports */
-import * as files from '../utils/files'
-import { IssueError } from '../issues/issues'
-import { parseSchemaXML } from '../utils/xml'
-
+// Imports
 import { localSchemaMap, localSchemaNames } from './config' // Changed from localSchemaList
+import { type SchemaSpec } from './specs'
+import { type HedSchemaXMLObject } from './xmlType'
+import { IssueError, type IssueParameters } from '../issues/issues'
+import * as files from '../utils/files'
+import parseSchemaXML from '../utils/xml'
 
 /**
  * Load schema XML data from a schema version or path description.
  *
- * @param {SchemaSpec} schemaDef The description of which schema to use.
- * @returns {Promise<Object>} The schema XML data.
+ * @param schemaDef The description of which schema to use.
+ * @returns The schema XML data.
  * @throws {IssueError} If the schema could not be loaded.
  */
-export default async function loadSchema(schemaDef = null) {
+export default async function loadSchema(schemaDef: SchemaSpec): Promise<HedSchemaXMLObject> {
   const xmlData = await loadPromise(schemaDef)
   if (xmlData === null) {
     IssueError.generateAndThrow('invalidSchemaSpecification', { spec: JSON.stringify(schemaDef) })
@@ -27,14 +28,12 @@ export default async function loadSchema(schemaDef = null) {
 /**
  * Choose the schema Promise from a schema version or path description.
  *
- * @param {SchemaSpec} schemaDef The description of which schema to use.
- * @returns {Promise<Object>} The schema XML data.
+ * @param schemaDef The description of which schema to use.
+ * @returns The schema XML data.
  * @throws {IssueError} If the schema could not be loaded.
  */
-async function loadPromise(schemaDef) {
-  if (schemaDef === null) {
-    return null
-  } else if (schemaDef.localPath) {
+async function loadPromise(schemaDef: SchemaSpec): Promise<HedSchemaXMLObject> {
+  if (schemaDef.localPath) {
     return loadLocalSchema(schemaDef.localPath)
   } else if (localSchemaNames.includes(schemaDef.localName)) {
     // Changed condition
@@ -47,12 +46,12 @@ async function loadPromise(schemaDef) {
 /**
  * Load schema XML data from the HED GitHub repository.
  *
- * @param {SchemaSpec} schemaDef The standard schema version to load.
- * @returns {Promise<object>} The schema XML data.
+ * @param schemaDef The standard schema version to load.
+ * @returns The schema XML data.
  * @throws {IssueError} If the schema could not be loaded.
  */
-function loadRemoteSchema(schemaDef) {
-  let url
+async function loadRemoteSchema(schemaDef: SchemaSpec): Promise<HedSchemaXMLObject> {
+  let url: string
   if (schemaDef.library) {
     url = `https://raw.githubusercontent.com/hed-standard/hed-schemas/refs/heads/main/library_schemas/${schemaDef.library}/hedxml/HED_${schemaDef.library}_${schemaDef.version}.xml`
   } else {
@@ -64,22 +63,22 @@ function loadRemoteSchema(schemaDef) {
 /**
  * Load schema XML data from a local file.
  *
- * @param {string} path The path to the schema XML data.
- * @returns {Promise<object>} The schema XML data.
+ * @param path The path to the schema XML data.
+ * @returns The schema XML data.
  * @throws {IssueError} If the schema could not be loaded.
  */
-function loadLocalSchema(path) {
+async function loadLocalSchema(path: string): Promise<HedSchemaXMLObject> {
   return loadSchemaFile(files.readFile(path), 'localSchemaLoadFailed', { path: path })
 }
 
 /**
  * Load schema XML data from a bundled file.
  *
- * @param {SchemaSpec} schemaDef The description of which schema to use.
- * @returns {Promise<object>} The schema XML data.
+ * @param schemaDef The description of which schema to use.
+ * @returns The schema XML data.
  * @throws {IssueError} If the schema could not be loaded.
  */
-async function loadBundledSchema(schemaDef) {
+async function loadBundledSchema(schemaDef: SchemaSpec): Promise<HedSchemaXMLObject> {
   try {
     return parseSchemaXML(localSchemaMap.get(schemaDef.localName))
   } catch (error) {
@@ -91,13 +90,17 @@ async function loadBundledSchema(schemaDef) {
 /**
  * Actually load the schema XML file.
  *
- * @param {Promise<string>} xmlDataPromise The Promise containing the unparsed XML data.
- * @param {string} issueCode The issue code.
- * @param {Object<string, string>} issueArgs The issue arguments passed from the calling function.
- * @returns {Promise<object>} The parsed schema XML data.
+ * @param xmlDataPromise The Promise containing the unparsed XML data.
+ * @param issueCode The issue code.
+ * @param issueArgs The issue arguments passed from the calling function.
+ * @returns The parsed schema XML data.
  * @throws {IssueError} If the schema could not be loaded.
  */
-async function loadSchemaFile(xmlDataPromise, issueCode, issueArgs) {
+async function loadSchemaFile(
+  xmlDataPromise: Promise<string>,
+  issueCode: string,
+  issueArgs: IssueParameters,
+): Promise<HedSchemaXMLObject> {
   try {
     const data = await xmlDataPromise
     return parseSchemaXML(data)
diff --git a/src/schema/parser.js b/src/schema/parser.ts
similarity index 54%
rename from src/schema/parser.js
rename to src/schema/parser.ts
index 14825a0e..83fc5f4a 100644
--- a/src/schema/parser.js
+++ b/src/schema/parser.ts
@@ -1,7 +1,6 @@
 /** This module holds the classes for populating a schema from XML.
  * @module schema/parser
  */
-import Set from 'core-js-pure/actual/set'
 import flattenDeep from 'lodash/flattenDeep'
 import zip from 'lodash/zip'
 import semver from 'semver'
@@ -20,57 +19,70 @@ import {
 } from './entries'
 import { IssueError } from '../issues/issues'
 
-import classRegex from '../data/json/classRegex.json'
+import { type DefinitionElement, type HedSchemaRootElement, type NamedElement, type NodeElement } from './xmlType'
 
-const lc = (str) => str.toLowerCase()
+interface ClassRegex {
+  char_regex: {
+    [key: string]: string
+  }
+  class_chars: {
+    [key: string]: string[]
+  }
+  class_words: {
+    [key: string]: string
+  }
+}
+
+import * as _classRegex from '../data/json/classRegex.json'
+const classRegex: ClassRegex = _classRegex
+
+const lc = (str: string) => str.toLowerCase()
 
 export default class SchemaParser {
   /**
    * The root XML element.
-   * @type {Object}
    */
-  rootElement
+  rootElement: HedSchemaRootElement
 
-  /**
-   * @type {Map<string, SchemaProperty>}
-   */
-  properties
+  properties: Map<string, SchemaProperty>
 
-  /**
-   * @type {Map<string, SchemaAttribute>}
-   */
-  attributes
+  attributes: Map<string, SchemaAttribute>
 
   /**
    * The schema's value classes.
-   * @type {SchemaEntryManager<SchemaValueClass>}
    */
-  valueClasses
+  valueClasses: SchemaEntryManager<SchemaValueClass>
 
   /**
    * The schema's unit classes.
-   * @type {SchemaEntryManager<SchemaUnitClass>}
    */
-  unitClasses
+  unitClasses: SchemaEntryManager<SchemaUnitClass>
 
   /**
    * The schema's unit modifiers.
-   * @type {SchemaEntryManager<SchemaUnitModifier>}
    */
-  unitModifiers
+  unitModifiers: SchemaEntryManager<SchemaUnitModifier>
 
   /**
    * The schema's tags.
-   * @type {SchemaEntryManager<SchemaTag>}
    */
-  tags
+  tags: SchemaEntryManager<SchemaTag>
+
+  /**
+   * Version-specific definitions.
+   */
+  private readonly _versionDefinitions: {
+    typeProperties: Set<string>
+    categoryProperties: Set<string>
+    roleProperties: Set<string>
+  }
 
   /**
    * Constructor.
    *
    * @param {Object} rootElement The root XML element.
    */
-  constructor(rootElement) {
+  constructor(rootElement: HedSchemaRootElement) {
     this.rootElement = rootElement
     this._versionDefinitions = {
       typeProperties: new Set(['boolProperty']),
@@ -87,12 +99,12 @@ export default class SchemaParser {
     }
   }
 
-  parse() {
+  public parse(): SchemaEntries {
     this.populateDictionaries()
     return new SchemaEntries(this)
   }
 
-  populateDictionaries() {
+  private populateDictionaries(): void {
     this.parseProperties()
     this.parseAttributes()
     this.parseUnitModifiers()
@@ -101,20 +113,18 @@ export default class SchemaParser {
     this.parseTags()
   }
 
-  getAllChildTags(parentElement, excludeTakeValueTags = true) {
+  private getAllChildTags(parentElement: NodeElement, excludeTakeValueTags = true): NodeElement[] {
     if (excludeTakeValueTags && SchemaParser.getElementTagName(parentElement) === '#') {
       return []
     }
-    const childTags = []
-    if (parentElement.$parent) {
-      childTags.push(parentElement)
-    }
+    const childTags = [parentElement]
     const tagElementChildren = parentElement.node ?? []
-    childTags.push(...flattenDeep(tagElementChildren.map((child) => this.getAllChildTags(child, excludeTakeValueTags))))
-    return childTags
+    return childTags.concat(
+      flattenDeep(tagElementChildren.map((child) => this.getAllChildTags(child, excludeTakeValueTags))),
+    )
   }
 
-  static getParentTagName(tagElement) {
+  private static getParentTagName(tagElement: NodeElement): string {
     const parentTagElement = tagElement.$parent
     if (parentTagElement?.$parent) {
       return SchemaParser.getElementTagName(parentTagElement)
@@ -126,68 +136,50 @@ export default class SchemaParser {
   /**
    * Extract the name of an XML element.
    *
-   * @param {Object} element An XML element.
-   * @returns {string} The name of the element.
+   * @param element An XML element.
+   * @returns The name of the element.
    */
-  static getElementTagName(element) {
+  private static getElementTagName(element: NamedElement): string {
     return element.name._
   }
 
   /**
    * Retrieve all the tags in the schema.
    *
-   * @returns {Map<Object, string>} The tag names and XML elements.
+   * @returns The tag names and XML elements.
    */
-  getAllTags() {
+  private getAllTags(): Map<NodeElement, string> {
     const nodeRoot = this.rootElement.schema
-    const tagElements = this.getAllChildTags(nodeRoot, false)
+    const tagElements = []
+    const tagElementChildren = nodeRoot.node
+    tagElements.push(...flattenDeep(tagElementChildren.map((child) => this.getAllChildTags(child, false))))
     const tags = tagElements.map((element) => SchemaParser.getElementTagName(element))
     return new Map(zip(tagElements, tags))
   }
 
-  // Rewrite starts here.
-
-  parseProperties() {
-    const propertyDefinitions = this._getDefinitionElements('property')
-    this.properties = new Map()
+  private parseProperties(): void {
+    const propertyDefinitions = this.rootElement.propertyDefinitions.propertyDefinition
+    this.properties = new Map<string, SchemaProperty>()
     for (const definition of propertyDefinitions) {
       const propertyName = SchemaParser.getElementTagName(definition)
-      if (this._versionDefinitions.categoryProperties?.has(propertyName)) {
-        this.properties.set(
-          propertyName,
-          // TODO: Switch back to class constant once upstream bug is fixed.
-          new SchemaProperty(propertyName, 'categoryProperty'),
-        )
-      } else if (this._versionDefinitions.typeProperties?.has(propertyName)) {
-        this.properties.set(
-          propertyName,
-          // TODO: Switch back to class constant once upstream bug is fixed.
-          new SchemaProperty(propertyName, 'typeProperty'),
-        )
-      } else if (this._versionDefinitions.roleProperties?.has(propertyName)) {
-        this.properties.set(
-          propertyName,
-          // TODO: Switch back to class constant once upstream bug is fixed.
-          new SchemaProperty(propertyName, 'roleProperty'),
-        )
-      }
+      this.properties.set(propertyName, new SchemaProperty(propertyName))
     }
     this._addCustomProperties()
   }
 
-  parseAttributes() {
-    const attributeDefinitions = this._getDefinitionElements('schemaAttribute')
-    this.attributes = new Map()
+  private parseAttributes(): void {
+    const attributeDefinitions = this.rootElement.schemaAttributeDefinitions.schemaAttributeDefinition
+    this.attributes = new Map<string, SchemaAttribute>()
     for (const definition of attributeDefinitions) {
       const attributeName = SchemaParser.getElementTagName(definition)
       const propertyElements = definition.property ?? []
       const properties = propertyElements.map((element) => this.properties.get(SchemaParser.getElementTagName(element)))
-      this.attributes.set(attributeName, new SchemaAttribute(attributeName, properties))
+      this.attributes.set(attributeName, new SchemaAttribute(attributeName, new Set(properties)))
     }
     this._addCustomAttributes()
   }
 
-  _getValueClassChars(name) {
+  private _getValueClassChars(name: string): RegExp {
     let classChars
     if (Array.isArray(classRegex.class_chars[name]) && classRegex.class_chars[name].length > 0) {
       classChars =
@@ -198,12 +190,13 @@ export default class SchemaParser {
     return new RegExp(classChars)
   }
 
-  parseValueClasses() {
-    const valueClasses = new Map()
-    const [booleanAttributeDefinitions, valueAttributeDefinitions] = this._parseDefinitions('valueClass')
+  private parseValueClasses(): void {
+    const valueClasses = new Map<string, SchemaValueClass>()
+    const [booleanAttributeDefinitions, valueAttributeDefinitions] = this._parseDefinitions(
+      this.rootElement.valueClassDefinitions.valueClassDefinition,
+    )
     for (const [name, valueAttributes] of valueAttributeDefinitions) {
       const booleanAttributes = booleanAttributeDefinitions.get(name)
-      //valueClasses.set(name, new SchemaValueClass(name, booleanAttributes, valueAttributes))
       const charRegex = this._getValueClassChars(name)
       const wordRegex = new RegExp(classRegex.class_words[name] ?? '^.+$')
       valueClasses.set(name, new SchemaValueClass(name, booleanAttributes, valueAttributes, charRegex, wordRegex))
@@ -211,9 +204,11 @@ export default class SchemaParser {
     this.valueClasses = new SchemaEntryManager(valueClasses)
   }
 
-  parseUnitModifiers() {
-    const unitModifiers = new Map()
-    const [booleanAttributeDefinitions, valueAttributeDefinitions] = this._parseDefinitions('unitModifier')
+  private parseUnitModifiers(): void {
+    const unitModifiers = new Map<string, SchemaUnitModifier>()
+    const [booleanAttributeDefinitions, valueAttributeDefinitions] = this._parseDefinitions(
+      this.rootElement.unitModifierDefinitions.unitModifierDefinition,
+    )
     for (const [name, valueAttributes] of valueAttributeDefinitions) {
       const booleanAttributes = booleanAttributeDefinitions.get(name)
       unitModifiers.set(name, new SchemaUnitModifier(name, booleanAttributes, valueAttributes))
@@ -221,9 +216,11 @@ export default class SchemaParser {
     this.unitModifiers = new SchemaEntryManager(unitModifiers)
   }
 
-  parseUnitClasses() {
-    const unitClasses = new Map()
-    const [booleanAttributeDefinitions, valueAttributeDefinitions] = this._parseDefinitions('unitClass')
+  private parseUnitClasses(): void {
+    const unitClasses = new Map<string, SchemaUnitClass>()
+    const [booleanAttributeDefinitions, valueAttributeDefinitions] = this._parseDefinitions(
+      this.rootElement.unitClassDefinitions.unitClassDefinition,
+    )
     const unitClassUnits = this.parseUnits()
 
     for (const [name, valueAttributes] of valueAttributeDefinitions) {
@@ -233,13 +230,13 @@ export default class SchemaParser {
     this.unitClasses = new SchemaEntryManager(unitClasses)
   }
 
-  parseUnits() {
-    const unitClassUnits = new Map()
-    const unitClassElements = this._getDefinitionElements('unitClass')
+  private parseUnits(): Map<string, Map<string, SchemaUnit>> {
+    const unitClassUnits = new Map<string, Map<string, SchemaUnit>>()
+    const unitClassElements = this.rootElement.unitClassDefinitions.unitClassDefinition
     const unitModifiers = this.unitModifiers
     for (const element of unitClassElements) {
       const elementName = SchemaParser.getElementTagName(element)
-      const units = new Map()
+      const units = new Map<string, SchemaUnit>()
       unitClassUnits.set(elementName, units)
       if (element.unit === undefined) {
         continue
@@ -261,21 +258,23 @@ export default class SchemaParser {
   /**
    * Parse the schema's tags.
    */
-  parseTags() {
+  private parseTags(): void {
     const tags = this.getAllTags()
     const shortTags = this._getShortTags(tags)
     const [booleanAttributeDefinitions, valueAttributeDefinitions] = this._parseAttributeElements(
       tags.keys(),
-      (element) => shortTags.get(element),
+      (element: NodeElement) => shortTags.get(element),
     )
 
     const tagUnitClassDefinitions = this._processTagUnitClasses(shortTags, valueAttributeDefinitions)
+    const tagValueClassDefinitions = this._processTagValueClasses(shortTags, valueAttributeDefinitions)
     this._processRecursiveAttributes(shortTags, booleanAttributeDefinitions)
 
     const tagEntries = this._createSchemaTags(
       booleanAttributeDefinitions,
       valueAttributeDefinitions,
       tagUnitClassDefinitions,
+      tagValueClassDefinitions,
     )
 
     this._injectTagFields(tags, shortTags, tagEntries)
@@ -286,12 +285,11 @@ export default class SchemaParser {
   /**
    * Generate the map from tag elements to shortened tag names.
    *
-   * @param {Map<Object, string>} tags The map from tag elements to tag strings.
-   * @returns {Map<Object, string>} The map from tag elements to shortened tag names.
-   * @private
+   * @param tags The map from tag elements to tag strings.
+   * @returns The map from tag elements to shortened tag names.
    */
-  _getShortTags(tags) {
-    const shortTags = new Map()
+  private _getShortTags(tags: Map<NodeElement, string>): Map<NodeElement, string> {
+    const shortTags = new Map<NodeElement, string>()
     for (const tagElement of tags.keys()) {
       const shortKey =
         SchemaParser.getElementTagName(tagElement) === '#'
@@ -305,14 +303,16 @@ export default class SchemaParser {
   /**
    * Process unit classes in tags.
    *
-   * @param {Map<Object, string>} shortTags The map from tag elements to shortened tag names.
-   * @param {Map<string, Map<SchemaAttribute, *>>} valueAttributeDefinitions The map from shortened tag names to their value schema attributes.
-   * @returns {Map<string, SchemaUnitClass[]>} The map from shortened tag names to their unit classes.
-   * @private
+   * @param shortTags The map from tag elements to shortened tag names.
+   * @param valueAttributeDefinitions The map from shortened tag names to their value schema attributes.
+   * @returns The map from shortened tag names to their unit classes.
    */
-  _processTagUnitClasses(shortTags, valueAttributeDefinitions) {
+  private _processTagUnitClasses(
+    shortTags: Map<NodeElement, string>,
+    valueAttributeDefinitions: Map<string, Map<SchemaAttribute, string[]>>,
+  ): Map<string, SchemaUnitClass[]> {
     const tagUnitClassAttribute = this.attributes.get('unitClass')
-    const tagUnitClassDefinitions = new Map()
+    const tagUnitClassDefinitions = new Map<string, SchemaUnitClass[]>()
 
     for (const tagName of shortTags.values()) {
       const valueAttributes = valueAttributeDefinitions.get(tagName)
@@ -330,14 +330,47 @@ export default class SchemaParser {
     return tagUnitClassDefinitions
   }
 
+  /**
+   * Process value classes in tags.
+   *
+   * @param shortTags The map from tag elements to shortened tag names.
+   * @param valueAttributeDefinitions The map from shortened tag names to their value schema attributes.
+   * @returns The map from shortened tag names to their value classes.
+   */
+  private _processTagValueClasses(
+    shortTags: Map<NodeElement, string>,
+    valueAttributeDefinitions: Map<string, Map<SchemaAttribute, string[]>>,
+  ): Map<string, SchemaValueClass[]> {
+    const tagValueClassAttribute = this.attributes.get('valueClass')
+    const tagValueClassDefinitions = new Map<string, SchemaValueClass[]>()
+
+    for (const tagName of shortTags.values()) {
+      const valueAttributes = valueAttributeDefinitions.get(tagName)
+      if (valueAttributes.has(tagValueClassAttribute)) {
+        tagValueClassDefinitions.set(
+          tagName,
+          valueAttributes.get(tagValueClassAttribute).map((valueClassName) => {
+            return this.valueClasses.getEntry(valueClassName)
+          }),
+        )
+        // TODO: Uncomment once value validation uses value classes.
+        // valueAttributes.delete(tagValueClassAttribute)
+      }
+    }
+
+    return tagValueClassDefinitions
+  }
+
   /**
    * Process recursive schema attributes.
    *
-   * @param {Map<Object, string>} shortTags The map from tag elements to shortened tag names.
-   * @param {Map<string, Set<SchemaAttribute>>} booleanAttributeDefinitions The map from shortened tag names to their boolean schema attributes. Passed by reference.
-   * @private
+   * @param shortTags The map from tag elements to shortened tag names.
+   * @param booleanAttributeDefinitions The map from shortened tag names to their boolean schema attributes. Passed by reference.
    */
-  _processRecursiveAttributes(shortTags, booleanAttributeDefinitions) {
+  private _processRecursiveAttributes(
+    shortTags: Map<NodeElement, string>,
+    booleanAttributeDefinitions: Map<string, Set<SchemaAttribute>>,
+  ): void {
     const recursiveAttributeMap = this._generateRecursiveAttributeMap(shortTags, booleanAttributeDefinitions)
 
     for (const [tagElement, recursiveAttributes] of recursiveAttributeMap) {
@@ -352,13 +385,15 @@ export default class SchemaParser {
   /**
    * Generate a map from tags to their recursive attributes.
    *
-   * @param {Map<Object, string>} shortTags The map from tag elements to shortened tag names.
-   * @param {Map<string, Set<SchemaAttribute>>} booleanAttributeDefinitions The map from shortened tag names to their boolean schema attributes. Passed by reference.
-   * @private
+   * @param shortTags The map from tag elements to shortened tag names.
+   * @param booleanAttributeDefinitions The map from shortened tag names to their boolean schema attributes. Passed by reference.
    */
-  _generateRecursiveAttributeMap(shortTags, booleanAttributeDefinitions) {
+  private _generateRecursiveAttributeMap(
+    shortTags: Map<NodeElement, string>,
+    booleanAttributeDefinitions: Map<string, Set<SchemaAttribute>>,
+  ): Map<NodeElement, Set<SchemaAttribute>> {
     const recursiveAttributes = this._getRecursiveAttributes()
-    const recursiveAttributeMap = new Map()
+    const recursiveAttributeMap = new Map<NodeElement, Set<SchemaAttribute>>()
 
     for (const [tagElement, tagName] of shortTags) {
       recursiveAttributeMap.set(tagElement, booleanAttributeDefinitions.get(tagName)?.intersection(recursiveAttributes))
@@ -367,17 +402,17 @@ export default class SchemaParser {
     return recursiveAttributeMap
   }
 
-  _getRecursiveAttributes() {
+  private _getRecursiveAttributes(): Set<SchemaAttribute> {
     const attributeArray = Array.from(this.attributes.values())
     let filteredAttributeArray
 
     if (semver.lt(this.rootElement.$.version, '8.3.0')) {
       filteredAttributeArray = attributeArray.filter((attribute) =>
-        attribute.roleProperties.has(this.properties.get('isInheritedProperty')),
+        attribute.properties.has(this.properties.get('isInheritedProperty')),
       )
     } else {
       filteredAttributeArray = attributeArray.filter(
-        (attribute) => !attribute.roleProperties.has(this.properties.get('annotationProperty')),
+        (attribute) => !attribute.properties.has(this.properties.get('annotationProperty')),
       )
     }
 
@@ -387,15 +422,20 @@ export default class SchemaParser {
   /**
    * Create the {@link SchemaTag} objects.
    *
-   * @param {Map<string, Set<SchemaAttribute>>} booleanAttributeDefinitions The map from shortened tag names to their boolean schema attributes.
-   * @param {Map<string, Map<SchemaAttribute, *>>} valueAttributeDefinitions The map from shortened tag names to their value schema attributes.
-   * @param {Map<string, SchemaUnitClass[]>} tagUnitClassDefinitions The map from shortened tag names to their unit classes.
-   * @returns {Map<string, SchemaTag>} The map from lowercase shortened tag names to their tag objects.
-   * @private
+   * @param booleanAttributeDefinitions The map from shortened tag names to their boolean schema attributes.
+   * @param valueAttributeDefinitions The map from shortened tag names to their value schema attributes.
+   * @param tagUnitClassDefinitions The map from shortened tag names to their unit classes.
+   * @param tagValueClassDefinitions The map from shortened tag names to their value classes.
+   * @returns The map from lowercase shortened tag names to their tag objects.
    */
-  _createSchemaTags(booleanAttributeDefinitions, valueAttributeDefinitions, tagUnitClassDefinitions) {
+  private _createSchemaTags(
+    booleanAttributeDefinitions: Map<string, Set<SchemaAttribute>>,
+    valueAttributeDefinitions: Map<string, Map<SchemaAttribute, string[]>>,
+    tagUnitClassDefinitions: Map<string, SchemaUnitClass[]>,
+    tagValueClassDefinitions: Map<string, SchemaValueClass[]>,
+  ): Map<string, SchemaTag> {
     const tagTakesValueAttribute = this.attributes.get('takesValue')
-    const tagEntries = new Map()
+    const tagEntries = new Map<string, SchemaTag>()
 
     for (const [name, valueAttributes] of valueAttributeDefinitions) {
       if (tagEntries.has(name)) {
@@ -404,11 +444,15 @@ export default class SchemaParser {
 
       const booleanAttributes = booleanAttributeDefinitions.get(name)
       const unitClasses = tagUnitClassDefinitions.get(name)
+      const valueClasses = tagValueClassDefinitions.get(name)
 
       if (booleanAttributes.has(tagTakesValueAttribute)) {
-        tagEntries.set(lc(name), new SchemaValueTag(name, booleanAttributes, valueAttributes, unitClasses))
+        tagEntries.set(
+          lc(name),
+          new SchemaValueTag(name, booleanAttributes, valueAttributes, unitClasses, valueClasses),
+        )
       } else {
-        tagEntries.set(lc(name), new SchemaTag(name, booleanAttributes, valueAttributes, unitClasses))
+        tagEntries.set(lc(name), new SchemaTag(name, booleanAttributes, valueAttributes, unitClasses, valueClasses))
       }
     }
 
@@ -418,12 +462,15 @@ export default class SchemaParser {
   /**
    * Inject special tag fields into the {@link SchemaTag} objects.
    *
-   * @param {Map<Object, string>} tags The map from tag elements to tag strings.
-   * @param {Map<Object, string>} shortTags The map from tag elements to shortened tag names.
-   * @param {Map<string, SchemaTag>} tagEntries The map from shortened tag names to tag objects.
-   * @private
+   * @param tags The map from tag elements to tag strings.
+   * @param shortTags The map from tag elements to shortened tag names.
+   * @param tagEntries The map from shortened tag names to tag objects.
    */
-  _injectTagFields(tags, shortTags, tagEntries) {
+  private _injectTagFields(
+    tags: Map<NodeElement, string>,
+    shortTags: Map<NodeElement, string>,
+    tagEntries: Map<string, SchemaTag>,
+  ): void {
     for (const tagElement of tags.keys()) {
       const tagName = shortTags.get(tagElement)
       const parentTagName = shortTags.get(tagElement.$parent)
@@ -438,20 +485,18 @@ export default class SchemaParser {
     }
   }
 
-  _parseDefinitions(category) {
-    const definitionElements = this._getDefinitionElements(category)
+  private _parseDefinitions(
+    definitionElements: Iterable<DefinitionElement>,
+  ): [Map<string, Set<SchemaAttribute>>, Map<string, Map<SchemaAttribute, string[]>>] {
     return this._parseAttributeElements(definitionElements, SchemaParser.getElementTagName)
   }
 
-  _getDefinitionElements(category) {
-    const categoryTagName = category + 'Definition'
-    const categoryParentTagName = categoryTagName + 's'
-    return this.rootElement[categoryParentTagName][categoryTagName]
-  }
-
-  _parseAttributeElements(elements, namer) {
-    const booleanAttributeDefinitions = new Map()
-    const valueAttributeDefinitions = new Map()
+  private _parseAttributeElements(
+    elements: Iterable<DefinitionElement>,
+    namer: (element: NamedElement) => string,
+  ): [Map<string, Set<SchemaAttribute>>, Map<string, Map<SchemaAttribute, string[]>>] {
+    const booleanAttributeDefinitions = new Map<string, Set<SchemaAttribute>>()
+    const valueAttributeDefinitions = new Map<string, Map<SchemaAttribute, string[]>>()
 
     for (const element of elements) {
       const [booleanAttributes, valueAttributes] = this._parseAttributeElement(element)
@@ -464,9 +509,9 @@ export default class SchemaParser {
     return [booleanAttributeDefinitions, valueAttributeDefinitions]
   }
 
-  _parseAttributeElement(element) {
-    const booleanAttributes = new Set()
-    const valueAttributes = new Map()
+  private _parseAttributeElement(element: DefinitionElement): [Set<SchemaAttribute>, Map<SchemaAttribute, string[]>] {
+    const booleanAttributes = new Set<SchemaAttribute>()
+    const valueAttributes = new Map<SchemaAttribute, string[]>()
 
     const tagAttributes = element.attribute ?? []
 
@@ -476,28 +521,28 @@ export default class SchemaParser {
         booleanAttributes.add(this.attributes.get(attributeName))
         continue
       }
-      const values = tagAttribute.value.map((value) => value._)
+      const values = tagAttribute.value.map((value) => value._.toString())
       valueAttributes.set(this.attributes.get(attributeName), values)
     }
 
     return [booleanAttributes, valueAttributes]
   }
 
-  _addCustomAttributes() {
+  private _addCustomAttributes(): void {
     const isInheritedProperty = this.properties.get('isInheritedProperty')
     const extensionAllowedAttribute = this.attributes.get('extensionAllowed')
     if (this.rootElement.$.library === undefined && semver.lt(this.rootElement.$.version, '8.2.0')) {
-      extensionAllowedAttribute._roleProperties.add(isInheritedProperty)
+      extensionAllowedAttribute._properties.add(isInheritedProperty)
     }
     const inLibraryAttribute = this.attributes.get('inLibrary')
     if (inLibraryAttribute && semver.lt(this.rootElement.$.version, '8.3.0')) {
-      inLibraryAttribute._roleProperties.add(isInheritedProperty)
+      inLibraryAttribute._properties.add(isInheritedProperty)
     }
   }
 
-  _addCustomProperties() {
+  private _addCustomProperties(): void {
     if (this.rootElement.$.library === undefined && semver.lt(this.rootElement.$.version, '8.2.0')) {
-      const recursiveProperty = new SchemaProperty('isInheritedProperty', 'roleProperty')
+      const recursiveProperty = new SchemaProperty('isInheritedProperty')
       this.properties.set('isInheritedProperty', recursiveProperty)
     }
   }
diff --git a/src/schema/schemaMerger.js b/src/schema/schemaMerger.ts
similarity index 60%
rename from src/schema/schemaMerger.js
rename to src/schema/schemaMerger.ts
index 2be95fc7..b10a4bab 100644
--- a/src/schema/schemaMerger.js
+++ b/src/schema/schemaMerger.ts
@@ -2,44 +2,46 @@
  * @module schema/schemaMerger
  */
 import { IssueError } from '../issues/issues'
-import { SchemaTag, SchemaValueTag } from './entries'
-import { PartneredSchema } from './containers'
+import { type SchemaAttribute, SchemaEntryManager, SchemaTag, SchemaValueTag } from './entries'
+import { type HedSchema, PartneredSchema } from './containers'
 
 export default class PartneredSchemaMerger {
   /**
    * The sources of data to be merged.
-   * @type {Schema[]}
    */
-  sourceSchemas
+  sourceSchemas: HedSchema[]
 
   /**
    * The current source of data to be merged.
-   * @type {Schema}
    */
-  currentSource
+  currentSource: HedSchema
 
   /**
    * The destination of data to be merged.
-   * @type {PartneredSchema}
    */
-  destination
+  destination: PartneredSchema
+
+  /**
+   * The tag definitions of the partnered schema
+   */
+  destinationTagDefinitions: Map<string, SchemaTag>
 
   /**
    * Constructor.
    *
-   * @param {Schema[]} sourceSchemas The sources of data to be merged.
+   * @param sourceSchemas The sources of data to be merged.
    */
-  constructor(sourceSchemas) {
+  constructor(sourceSchemas: HedSchema[]) {
     this.sourceSchemas = sourceSchemas
     this.destination = new PartneredSchema(sourceSchemas)
+    this.destinationTagDefinitions = this.destination.entries.tags.definitions
     this._validate()
   }
 
   /**
    * Pre-validate the partnered schemas.
-   * @private
    */
-  _validate() {
+  private _validate(): void {
     for (const schema of this.sourceSchemas.slice(1)) {
       if (schema.withStandard !== this.destination.withStandard) {
         IssueError.generateAndThrow('differentWithStandard', {
@@ -53,9 +55,9 @@ export default class PartneredSchemaMerger {
   /**
    * Merge the lazy partnered schemas.
    *
-   * @returns {PartneredSchema} The merged partnered schema.
+   * @returns The merged partnered schema.
    */
-  mergeSchemas() {
+  public mergeSchemas(): PartneredSchema {
     for (const additionalSchema of this.sourceSchemas.slice(1)) {
       this.currentSource = additionalSchema
       this._mergeData()
@@ -65,60 +67,47 @@ export default class PartneredSchemaMerger {
 
   /**
    * The source schema's tag collection.
-   *
-   * @return {SchemaEntryManager<SchemaTag>}
    */
-  get sourceTags() {
+  get sourceTags(): SchemaEntryManager<SchemaTag> {
     return this.currentSource.entries.tags
   }
 
-  /**
-   * The destination schema's tag collection.
-   *
-   * @returns {SchemaEntryManager<SchemaTag>}
-   */
-  get destinationTags() {
-    return this.destination.entries.tags
-  }
-
   /**
    * Merge two lazy partnered schemas.
-   * @private
    */
-  _mergeData() {
+  private _mergeData(): void {
     this._mergeTags()
   }
 
   /**
    * Merge the tags from two lazy partnered schemas.
-   * @private
    */
-  _mergeTags() {
+  private _mergeTags(): void {
     for (const tag of this.sourceTags.values()) {
       this._mergeTag(tag)
     }
+    this.destination.entries.tags = new SchemaEntryManager(this.destinationTagDefinitions)
   }
 
   /**
    * Merge a tag from one schema to another.
    *
-   * @param {SchemaTag} tag The tag to copy.
-   * @private
+   * @param tag The tag to copy.
    */
-  _mergeTag(tag) {
-    if (!tag.getAttributeValue('inLibrary')) {
+  private _mergeTag(tag: SchemaTag): void {
+    if (!tag.getAttributeValues('inLibrary')) {
       return
     }
 
     const shortName = tag.name
-    if (this.destinationTags.hasEntry(shortName.toLowerCase())) {
+    if (this.destinationTagDefinitions.has(shortName.toLowerCase())) {
       IssueError.generateAndThrow('lazyPartneredSchemasShareTag', { tag: shortName })
     }
 
-    const rootedTagShortName = tag.getAttributeValue('rooted')
+    const rootedTagShortName = tag.getSingleAttributeValue('rooted')
     if (rootedTagShortName) {
       const parentTag = tag.parent
-      if (parentTag?.name?.toLowerCase() !== rootedTagShortName?.toLowerCase()) {
+      if (parentTag?.name?.toLowerCase() !== rootedTagShortName.toLowerCase()) {
         IssueError.generateAndThrowInternalError(`Node ${shortName} is improperly rooted.`)
       }
     }
@@ -129,12 +118,11 @@ export default class PartneredSchemaMerger {
   /**
    * Copy a tag from one schema to another.
    *
-   * @param {SchemaTag} tag The tag to copy.
-   * @private
+   * @param tag The tag to copy.
    */
-  _copyTagToSchema(tag) {
-    const booleanAttributes = new Set()
-    const valueAttributes = new Map()
+  private _copyTagToSchema(tag: SchemaTag): void {
+    const booleanAttributes = new Set<SchemaAttribute>()
+    const valueAttributes = new Map<SchemaAttribute, any>()
 
     for (const attribute of tag.booleanAttributes) {
       booleanAttributes.add(this.destination.entries.attributes.getEntry(attribute.name) ?? attribute)
@@ -143,20 +131,20 @@ export default class PartneredSchemaMerger {
       valueAttributes.set(this.destination.entries.attributes.getEntry(key.name) ?? key, value)
     }
 
-    /**
-     * @type {SchemaUnitClass[]}
-     */
     const unitClasses = tag.unitClasses.map(
       (unitClass) => this.destination.entries.unitClasses.getEntry(unitClass.name) ?? unitClass,
     )
+    const valueClasses = tag.valueClasses.map(
+      (valueClass) => this.destination.entries.valueClasses.getEntry(valueClass.name) ?? valueClass,
+    )
 
     let newTag
     if (tag instanceof SchemaValueTag) {
-      newTag = new SchemaValueTag(tag.name, booleanAttributes, valueAttributes, unitClasses)
+      newTag = new SchemaValueTag(tag.name, booleanAttributes, valueAttributes, unitClasses, valueClasses)
     } else {
-      newTag = new SchemaTag(tag.name, booleanAttributes, valueAttributes, unitClasses)
+      newTag = new SchemaTag(tag.name, booleanAttributes, valueAttributes, unitClasses, valueClasses)
     }
-    const destinationParentTag = this.destinationTags.getEntry(tag.parent?.name?.toLowerCase())
+    const destinationParentTag = this.destinationTagDefinitions.get(tag.parent?.name?.toLowerCase())
     if (destinationParentTag) {
       newTag.parent = destinationParentTag
       if (newTag instanceof SchemaValueTag) {
@@ -164,6 +152,6 @@ export default class PartneredSchemaMerger {
       }
     }
 
-    this.destinationTags._definitions.set(newTag.name.toLowerCase(), newTag)
+    this.destinationTagDefinitions.set(newTag.name.toLowerCase(), newTag)
   }
 }
diff --git a/src/schema/specs.js b/src/schema/specs.ts
similarity index 57%
rename from src/schema/specs.js
rename to src/schema/specs.ts
index e83e5d6c..1c1ff6b1 100644
--- a/src/schema/specs.js
+++ b/src/schema/specs.ts
@@ -12,37 +12,33 @@ import { IssueError } from '../issues/issues'
 export class SchemaSpec {
   /**
    * The prefix of this schema.
-   * @type {string}
    */
-  prefix
+  readonly prefix: string
 
   /**
    * The version of this schema.
-   * @type {string}
    */
-  version
+  readonly version: string
 
   /**
    * The library name of this schema.
-   * @type {string}
    */
-  library
+  readonly library: string
 
   /**
    * The local path for this schema.
-   * @type {string}
    */
-  localPath
+  readonly localPath: string
 
   /**
    * Constructor.
    *
-   * @param {string} prefix The prefix of this schema.
-   * @param {string} version The version of this schema.
-   * @param {string?} library The library name of this schema.
-   * @param {string?} localPath The local path for this schema.
+   * @param prefix The prefix of this schema.
+   * @param version The version of this schema.
+   * @param library The library name of this schema.
+   * @param localPath The local path for this schema.
    */
-  constructor(prefix, version, library = '', localPath = '') {
+  constructor(prefix: string, version: string, library = '', localPath = '') {
     this.prefix = prefix
     this.version = version
     this.library = library
@@ -51,10 +47,8 @@ export class SchemaSpec {
 
   /**
    * Compute the name for the bundled copy of this schema.
-   *
-   * @returns {string}
    */
-  get localName() {
+  public get localName(): string {
     if (!this.library) {
       return 'HED' + this.version
     } else {
@@ -65,12 +59,11 @@ export class SchemaSpec {
   /**
    * Parse a single schema specification string into a SchemaSpec object.
    *
-   * @param {string} versionSpec A schema version specification string (e.g., "nickname:library_version").
-   * @returns {SchemaSpec} A schema specification object with parsed nickname, library, and version.
+   * @param versionSpec A schema version specification string (e.g., "nickname:library_version").
+   * @returns A schema specification object with parsed nickname, library, and version.
    * @throws {IssueError} If the schema specification format is invalid.
-   * @public
    */
-  static parseVersionSpec(versionSpec) {
+  public static parseVersionSpec(versionSpec: string): SchemaSpec {
     const [nickname, schema] = SchemaSpec._splitPrefixAndSchema(versionSpec)
     const [library, version] = SchemaSpec._splitLibraryAndVersion(schema, versionSpec)
     return new SchemaSpec(nickname, version, library)
@@ -79,25 +72,23 @@ export class SchemaSpec {
   /**
    * Split a schema version string into prefix (nickname) and schema parts using colon delimiter.
    *
-   * @param {string} prefixSchemaSpec The schema version string to split.
-   * @returns {string[]} An array with [nickname, schema] where nickname may be empty string.
+   * @param prefixSchemaSpec The schema version string to split.
+   * @returns An array with [nickname, schema] where nickname may be empty string.
    * @throws {IssueError} If the schema specification format is invalid.
-   * @private
    */
-  static _splitPrefixAndSchema(prefixSchemaSpec) {
+  private static _splitPrefixAndSchema(prefixSchemaSpec: string): [string, string] {
     return SchemaSpec._splitVersionSegments(prefixSchemaSpec, prefixSchemaSpec, ':')
   }
 
   /**
    * Split a schema string into library and version parts using underscore delimiter.
    *
-   * @param {string} libraryVersionSpec The schema string to split (library_version format).
-   * @param {string} originalVersion The original version string for error reporting.
-   * @returns {string[]} An array with [library, version] where library may be empty string.
+   * @param libraryVersionSpec The schema string to split (library_version format).
+   * @param originalVersion The original version string for error reporting.
+   * @returns An array with [library, version] where library may be empty string.
    * @throws {IssueError} If the schema specification format is invalid or version is not valid semver.
-   * @private
    */
-  static _splitLibraryAndVersion(libraryVersionSpec, originalVersion) {
+  private static _splitLibraryAndVersion(libraryVersionSpec: string, originalVersion: string): [string, string] {
     const [library, version] = SchemaSpec._splitVersionSegments(libraryVersionSpec, originalVersion, '_')
     if (!semver.valid(version)) {
       IssueError.generateAndThrow('invalidSchemaSpecification', { spec: originalVersion })
@@ -108,15 +99,18 @@ export class SchemaSpec {
   /**
    * Split a version string into two segments using the specified delimiter.
    *
-   * @param {string} versionSpec The version string to split.
-   * @param {string} originalVersion The original version string for error reporting.
-   * @param {string} splitCharacter The character to use as delimiter (':' or '_').
-   * @returns {string[]} An array with [firstSegment, secondSegment] where firstSegment may be empty string.
+   * @param versionSpec The version string to split.
+   * @param originalVersion The original version string for error reporting.
+   * @param splitCharacter The character to use as delimiter (':' or '_').
+   * @returns An array with [firstSegment, secondSegment] where firstSegment may be empty string.
    * @throws {IssueError} If the schema specification format is invalid or contains non-alphabetic characters in first segment.
-   * @private
    */
-  static _splitVersionSegments(versionSpec, originalVersion, splitCharacter) {
-    const alphabeticRegExp = new RegExp('^[a-zA-Z]+$')
+  private static _splitVersionSegments(
+    versionSpec: string,
+    originalVersion: string,
+    splitCharacter: string,
+  ): [string, string] {
+    const alphabeticRegExp = /^[a-zA-Z]+$/
     const versionSplit = versionSpec.split(splitCharacter)
     const secondSegment = versionSplit.pop()
     const firstSegment = versionSplit.pop()
@@ -136,39 +130,41 @@ export class SchemaSpec {
 export class SchemasSpec {
   /**
    * The specification mapping data.
-   * @type {Map<string, SchemaSpec[]>}
    */
-  data
+  readonly #data: Map<string, SchemaSpec[]>
 
   /**
    * Constructor.
    */
   constructor() {
-    this.data = new Map()
+    this.#data = new Map<string, SchemaSpec[]>()
   }
 
   /**
-   * Iterator over the specifications.
-   *
-   * @yields {Iterator} - [string, SchemaSpec[]]
+   * The specification mapping data.
    */
-  *[Symbol.iterator]() {
-    for (const [prefix, schemaSpecs] of this.data.entries()) {
-      yield [prefix, schemaSpecs]
-    }
+  public get data(): Map<string, SchemaSpec[]> {
+    return new Map(this.#data)
+  }
+
+  /**
+   * Iterate over the schema specifications.
+   */
+  *[Symbol.iterator](): MapIterator<[string, SchemaSpec[]]> {
+    yield* this.#data.entries()
   }
 
   /**
    * Add a schema to this specification.
    *
-   * @param {SchemaSpec} schemaSpec A schema specification.
-   * @returns {SchemasSpec| map} This object.
+   * @param schemaSpec A schema specification.
+   * @returns This object.
    */
-  addSchemaSpec(schemaSpec) {
-    if (this.data.has(schemaSpec.prefix)) {
-      this.data.get(schemaSpec.prefix).push(schemaSpec)
+  public addSchemaSpec(schemaSpec: SchemaSpec): this {
+    if (this.#data.has(schemaSpec.prefix)) {
+      this.#data.get(schemaSpec.prefix).push(schemaSpec)
     } else {
-      this.data.set(schemaSpec.prefix, [schemaSpec])
+      this.#data.set(schemaSpec.prefix, [schemaSpec])
     }
     return this
   }
@@ -176,12 +172,11 @@ export class SchemasSpec {
   /**
    * Parse a HED version specification into a schemas specification object.
    *
-   * @param {string|string[]} versionSpecs The HED version specification, can be a single version string or array of version strings.
-   * @returns {SchemasSpec} A schemas specification object containing parsed schema specifications.
+   * @param versionSpecs The HED version specification, can be a single version string or array of version strings.
+   * @returns A schemas specification object containing parsed schema specifications.
    * @throws {IssueError} If any schema specification is invalid.
-   * @public
    */
-  static parseVersionSpecs(versionSpecs) {
+  public static parseVersionSpecs(versionSpecs: string | string[]): SchemasSpec {
     const schemasSpec = new SchemasSpec()
     const processVersion = castArray(versionSpecs)
     if (processVersion.length === 0) {
diff --git a/src/schema/xmlType.ts b/src/schema/xmlType.ts
new file mode 100644
index 00000000..b5de6569
--- /dev/null
+++ b/src/schema/xmlType.ts
@@ -0,0 +1,31 @@
+export type NamedElement = { name: { _: string } }
+export type AttributeValue = string | number
+export type AttributeElement = NamedElement & { value?: { _: AttributeValue }[] }
+export type DefinitionElement = NamedElement & { attribute?: AttributeElement[] }
+export type NodeElement = DefinitionElement & { node?: NodeElement[]; $parent?: NodeElement | null }
+type UnitClassElement = DefinitionElement & { unit: DefinitionElement[] }
+type SchemaAttributeElement = NamedElement & { property: AttributeElement[] }
+
+export type HedSchemaRootElement = {
+  $: { version: string; library?: string; withStandard?: string }
+  schema: { node: NodeElement[] }
+  unitClassDefinitions: {
+    unitClassDefinition: UnitClassElement[]
+  }
+  unitModifierDefinitions: {
+    unitModifierDefinition: DefinitionElement[]
+  }
+  valueClassDefinitions: {
+    valueClassDefinition: DefinitionElement[]
+  }
+  schemaAttributeDefinitions: {
+    schemaAttributeDefinition: SchemaAttributeElement[]
+  }
+  propertyDefinitions: {
+    propertyDefinition: NamedElement[]
+  }
+}
+
+export type HedSchemaXMLObject = {
+  HED: HedSchemaRootElement
+}
diff --git a/src/utils/array.js b/src/utils/array.js
deleted file mode 100644
index 67aab8dd..00000000
--- a/src/utils/array.js
+++ /dev/null
@@ -1,19 +0,0 @@
-/** This module holds the sidecar validator class.
- * @module
- */
-
-/**
- * Apply a function recursively to an array.
- *
- * @template T,U
- * @param {function(T): U} fn The function to apply.
- * @param {T[]} array The array to map.
- * @returns {U[]} The mapped array.
- */
-export function recursiveMap(fn, array) {
-  if (Array.isArray(array)) {
-    return array.map((element) => recursiveMap(fn, element))
-  } else {
-    return fn(array)
-  }
-}
diff --git a/src/utils/array.ts b/src/utils/array.ts
new file mode 100644
index 00000000..ddb567b1
--- /dev/null
+++ b/src/utils/array.ts
@@ -0,0 +1,41 @@
+/**
+ * Array utility functions.
+ * @module
+ */
+
+type NestedArray<T> = T | NestedArray<T>[]
+
+/**
+ * Apply a function recursively to an array.
+ *
+ * @param array The array to map.
+ * @param fn The function to apply.
+ * @returns The mapped array.
+ */
+export function recursiveMap<T, U>(array: NestedArray<T>, fn: (element: T) => U): NestedArray<U> {
+  if (Array.isArray(array)) {
+    return array.map((element) => recursiveMap(element, fn))
+  } else {
+    return fn(array)
+  }
+}
+
+/**
+ * Generate an iterator over the pairwise combinations of an array.
+ *
+ * @param array The array to combine.
+ * @returns A generator which iterates over the list of combinations as tuples.
+ */
+export function* iteratePairwiseCombinations<T>(array: T[]): Generator<[T, T]> {
+  const pairs = array.flatMap((first, index) => array.slice(index + 1).map((second): [T, T] => [first, second]))
+  yield* pairs
+}
+
+/**
+ * Type guard for an ordered pair of numbers (e.g. bounds).
+ *
+ * @param value A possible ordered pair of numbers.
+ */
+export function isNumberPair(value: unknown): value is [number, number] {
+  return Array.isArray(value) && value.length === 2 && value.every((bound) => typeof bound === 'number')
+}
diff --git a/src/utils/files.js b/src/utils/files.ts
similarity index 65%
rename from src/utils/files.js
rename to src/utils/files.ts
index fc14e94c..6547b143 100644
--- a/src/utils/files.js
+++ b/src/utils/files.ts
@@ -1,4 +1,5 @@
-/** This module holds asynchronous functions for reading files.
+/**
+ * This module holds asynchronous functions for reading files.
  * @module
  */
 import { readFile as readFilePromise } from 'node:fs/promises'
@@ -8,11 +9,11 @@ import { IssueError } from '../issues/issues'
 /**
  * Read a local file.
  *
- * @param {string} fileName The file path.
- * @returns {Promise<string>} A promise with the file contents.
+ * @param fileName The file path.
+ * @returns A promise with the file contents.
  * @throws {IssueError} If the file read failed or if called in a browser environment.
  */
-export async function readFile(fileName) {
+export async function readFile(fileName: string): Promise<string> {
   try {
     const stringBuffer = await readFilePromise(fileName, 'utf8')
     return stringBuffer.toString()
@@ -24,16 +25,16 @@ export async function readFile(fileName) {
 /**
  * Read a remote file using HTTPS.
  *
- * @param {string} url The remote URL.
- * @returns {Promise<string>} A promise with the file contents.
+ * @param url The remote URL.
+ * @returns A promise with the file contents.
  * @throws {IssueError} If the network read failed.
  */
-export async function readHTTPSFile(url) {
+export async function readHTTPSFile(url: string): Promise<string> {
   const response = await fetch(url)
   if (!response.ok) {
     IssueError.generateAndThrow('networkReadError', {
       url: url,
-      statusCode: response.status,
+      statusCode: response.status.toString(),
       statusText: response.statusText,
     })
   }
diff --git a/src/utils/hedStrings.js b/src/utils/hedStrings.ts
similarity index 59%
rename from src/utils/hedStrings.js
rename to src/utils/hedStrings.ts
index f48673f3..908e07d3 100644
--- a/src/utils/hedStrings.js
+++ b/src/utils/hedStrings.ts
@@ -1,7 +1,12 @@
+/**
+ * HED string-related utility functions.
+ * @module
+ */
+
 /**
  * Get the indices of all slashes in a HED tag.
  */
-export const getTagSlashIndices = function (tag) {
+export function getTagSlashIndices(tag: string): number[] {
   const indices = []
   let i = -1
   while ((i = tag.indexOf('/', i + 1)) >= 0) {
diff --git a/src/utils/memoizer.js b/src/utils/memoizer.js
deleted file mode 100644
index ba7db9d4..00000000
--- a/src/utils/memoizer.js
+++ /dev/null
@@ -1,44 +0,0 @@
-/** Memoizer class. **/
-
-import { IssueError } from '../issues/issues'
-
-/**
- * Superclass for property memoization until we can get away with private fields.
- */
-export default class Memoizer {
-  /**
-   * Map containing memoized properties (string --> any).
-   *
-   * @type {Map}
-   * @private
-   */
-  _memoizedProperties
-
-  /**
-   * Constructor.
-   */
-  constructor() {
-    this._memoizedProperties = new Map()
-  }
-
-  /**
-   * Memoize a property.
-   *
-   * @template T
-   * @param {string} propertyName The property name.
-   * @param {function() : T} valueComputer A function to compute the property's value.
-   * @returns {T} The computed value.
-   * @protected
-   */
-  _memoize(propertyName, valueComputer) {
-    if (!propertyName) {
-      IssueError.generateAndThrowInternalError('Invalid property name in Memoizer subclass.')
-    }
-    if (this._memoizedProperties.has(propertyName)) {
-      return this._memoizedProperties.get(propertyName)
-    }
-    const value = valueComputer()
-    this._memoizedProperties.set(propertyName, value)
-    return value
-  }
-}
diff --git a/src/utils/paths.js b/src/utils/paths.js
deleted file mode 100644
index d7d5ab18..00000000
--- a/src/utils/paths.js
+++ /dev/null
@@ -1,421 +0,0 @@
-/**
- * This module provides utility functions for working with BIDS paths.
- * @module
- */
-
-import path from 'node:path'
-
-/**
- * Checks if one path is a subpath of another.
- *
- * This function normalizes the input paths before comparison. Normalization includes:
- * - Converting null or undefined to an empty string.
- * - Replacing a single dot ('.') with an empty string.
- * - Removing leading './'.
- * - Removing trailing '/'.
- *
- * A path is considered a subpath of itself.
- * If the normalized parent path is an empty string (e.g., from '.', './', or '/'),
- * any non-empty child path is considered a subpath.
- *
- * @param {string|null|undefined} potentialChild The path to check if it's a subpath.
- * @param {string|null|undefined} potentialParent The path to check if it's a parent.
- * @returns {boolean} True if potentialChild is a subpath of potentialParent, false otherwise.
- */
-export function isSubpath(potentialChild, potentialParent) {
-  // Normalize paths for consistent comparison
-  const normalizePath = (rawPath) => {
-    // Handle null/undefined gracefully, and ensure '.' normalizes to an empty string
-    // similar to how './' and '/' are effectively treated.
-    let p = String(rawPath == null ? '' : rawPath)
-
-    if (p === '.') {
-      return '' // Explicitly normalize '.' to an empty string
-    }
-    if (p.startsWith('./')) {
-      p = p.substring(2)
-    }
-    if (p.endsWith('/')) {
-      p = p.slice(0, -1)
-    }
-    return p
-  }
-
-  const normChild = normalizePath(potentialChild)
-  const normParent = normalizePath(potentialParent)
-
-  if (normChild === normParent) {
-    // A path is considered a subpath of itself
-    return true
-  }
-
-  // If the parent path normalizes to an empty string (e.g., from '.', './', or '/'),
-  // then any non-empty child path is considered a subpath.
-  // (The case where normChild is also empty is covered by normChild === normParent)
-  if (normParent === '') {
-    return true
-  }
-
-  // Check if the child path starts with the parent path followed by a directory separator
-  return normChild.startsWith(normParent + '/')
-}
-
-/**
- * Organizes a list of relative file paths based on BIDS naming conventions.
- *
- * This function filters and categorizes file paths into a structured object. It identifies files
- * based on whether they are in special directories (like 'phenotype'), are top-level files, or
- * are located within subject-specific directories ('sub-xxx').
- *
- * Files are categorized by matching their filename against a list of suffixes (e.g., 'events',
- * 'participants') or by their presence in a special directory. Only files with '.tsv' or '.json'
- * extensions are considered.
- *
- * @param {string[]} relativeFilePaths - A list of relative file paths to organize.
- * @param {string[]} suffixes - A list of filename suffixes to categorize by (e.g., 'events').
- * @param {string[]} specialDirs - A list of special directory names (e.g., 'phenotype').
- * @returns {{candidates: string[], organizedPaths: Map<string, Map<string, string[]>>}}
- *          An object containing two properties:
- *          - `candidates`: A list of all file paths that were successfully categorized.
- *          - `organizedPaths`: A Map where keys are the suffixes and special directories.
- *            Each value is a Map with 'tsv' and 'json' properties, containing the corresponding
- *            file paths. Keys will be present even if no files are found for them.
- */
-export function organizePaths(relativeFilePaths, suffixes, specialDirs) {
-  const candidates = []
-  // Use helper function to initialize organizedPaths
-  const organizedPaths = _initializeOrganizedPaths([...suffixes, ...specialDirs])
-
-  for (const relativePath of relativeFilePaths) {
-    // Basic validation and extension check
-    if (typeof relativePath !== 'string' || (!relativePath.endsWith('.tsv') && !relativePath.endsWith('.json'))) {
-      continue
-    }
-
-    const pathParts = relativePath.split('/')
-    const basename = pathParts[pathParts.length - 1]
-    const firstComponent = pathParts[0]
-
-    const ext = relativePath.endsWith('.tsv') ? 'tsv' : 'json'
-
-    let categorized = false
-
-    // Rule 1: Check if the file is in a special directory.
-    if (specialDirs.includes(firstComponent)) {
-      organizedPaths.get(firstComponent).get(ext).push(relativePath)
-      categorized = true
-    } else {
-      // Rule 2: Check if it's a top-level file or in a subject directory.
-      const isToplevel = pathParts.length === 1
-      const inSubDir = firstComponent.startsWith('sub-')
-
-      if (isToplevel || inSubDir) {
-        // Rule 3: Either it is the suffix or the suffix starts with an underscore and matches the end of the filename.
-        const filenameNoExt = basename.substring(0, basename.lastIndexOf('.'))
-        for (const suffix of suffixes) {
-          let match = false
-          if (filenameNoExt === suffix) {
-            match = true
-          } else if (suffix.startsWith('_') && filenameNoExt.endsWith(suffix)) {
-            match = true
-          }
-          if (match) {
-            organizedPaths.get(suffix).get(ext).push(relativePath)
-            categorized = true
-            break // Stop after first suffix match.
-          }
-        }
-      }
-    }
-
-    // If the file was categorized, add it to the candidates list.
-    if (categorized) {
-      candidates.push(relativePath)
-    }
-  }
-
-  return { candidates, organizedPaths }
-}
-
-/**
- * Updates the entity dictionary with a new entity.
- *
- * @param {object} nameDict The dictionary of BIDS filename parts.
- * @param {string} entity The entity string to parse and add.
- * @private
- */
-function _updateEntity(nameDict, entity) {
-  const parts = entity.split('-')
-  if (parts.length === 2 && parts[0] && parts[1]) {
-    nameDict.entities[parts[0]] = parts[1]
-  } else {
-    nameDict.bad.push(entity)
-  }
-}
-
-/**
- * Split a filename into BIDS-relevant components.
- *
- * This is a JavaScript implementation of the Python code provided by the user.
- *
- * @param {string} filePath Path to be parsed.
- * @returns {{basename: string, suffix: string, prefix: string, ext: string, bad: string[], entities: Record<string, string>}} An object containing the parts of the BIDS filename.
- */
-export function parseBidsFilename(filePath) {
-  const nameDict = {
-    basename: '',
-    suffix: null,
-    prefix: null,
-    ext: '',
-    bad: [],
-    entities: {},
-  }
-
-  const strippedPath = filePath.trim()
-  const lastSlash = strippedPath.lastIndexOf('/')
-  const filename = lastSlash === -1 ? strippedPath : strippedPath.substring(lastSlash + 1)
-
-  // Simplified extension parsing
-  const firstDot = filename.indexOf('.')
-  let basename = filename
-  if (firstDot !== -1) {
-    nameDict.ext = filename.substring(firstDot)
-    basename = filename.substring(0, firstDot)
-  }
-  nameDict.basename = basename
-
-  if (!basename) {
-    return nameDict
-  }
-
-  const lastUnderscore = basename.lastIndexOf('_')
-
-  // Case: No underscore in filename
-  if (lastUnderscore === -1) {
-    const entityCount = (basename.match(/-/g) || []).length
-    if (entityCount > 1) {
-      nameDict.bad.push(basename)
-    } else if (entityCount === 1) {
-      _updateEntity(nameDict, basename)
-    } else {
-      nameDict.suffix = basename
-    }
-    return nameDict
-  }
-
-  // Case: Underscore present
-  const rest = basename.substring(0, lastUnderscore)
-  let suffix = basename.substring(lastUnderscore + 1)
-
-  if (suffix.includes('-') && (suffix.match(/-/g) || []).length === 1) {
-    _updateEntity(nameDict, suffix)
-    suffix = null // it was an entity, not a suffix
-  }
-  nameDict.suffix = suffix
-
-  const entityPieces = rest.split('_')
-  if (entityPieces.length > 0 && !entityPieces[0].includes('-')) {
-    nameDict.prefix = entityPieces.shift()
-  }
-
-  for (const entity of entityPieces) {
-    _updateEntity(nameDict, entity)
-  }
-
-  return nameDict
-}
-
-/**
- * Get the directory part of a path.
- * @param {string} path The path.
- * @returns {string} The directory part of the path.
- * @private
- */
-export function getDir(path) {
-  const lastSlash = path.lastIndexOf('/')
-  return lastSlash === -1 ? '' : path.substring(0, lastSlash)
-}
-
-/**
- * Filter a list of JSON sidecar paths to find candidates for a given TSV file.
- * @param {string[]} jsonList A list of relative paths of JSON sidecars.
- * @param {string} tsvDir The directory of the TSV file.
- * @param {object} tsvParsed The parsed BIDS filename of the TSV file.
- * @returns {string[]} A list of candidate JSON sidecar paths.
- * @private
- */
-export function _getCandidates(jsonList, tsvDir, tsvParsed) {
-  return jsonList.filter((jsonPath) => {
-    const jsonDir = path.dirname(jsonPath)
-
-    // Sidecar must be in the tsv file's directory hierarchy.
-    if (!isSubpath(tsvDir, jsonDir)) {
-      return false
-    }
-
-    const jsonParsed = parseBidsFilename(jsonPath)
-
-    // Suffix must match if json has a suffix. An events.json sidecar can apply to any events.tsv file.
-    if (jsonParsed.suffix && tsvParsed.suffix !== jsonParsed.suffix) {
-      return false
-    }
-
-    // All entities in json must be in tsv and have same value
-    for (const [key, value] of Object.entries(jsonParsed.entities)) {
-      if (tsvParsed.entities[key] !== value) {
-        return false
-      }
-    }
-
-    return true
-  })
-}
-
-/**
- * Sort a list of candidate sidecar paths from least to most specific.
- *
- * The sorting is done based on path depth and number of entities.
- *
- * @param {string[]} candidates A list of candidate JSON sidecar paths.
- * @private
- */
-export function _sortCandidates(candidates) {
-  candidates.sort((a, b) => {
-    const aDir = path.dirname(a)
-    const bDir = path.dirname(b)
-    if (aDir.length !== bDir.length) {
-      return aDir.length - bDir.length
-    }
-    const aParsed = parseBidsFilename(a)
-    const bParsed = parseBidsFilename(b)
-    return Object.keys(aParsed.entities).length - Object.keys(bParsed.entities).length
-  })
-}
-
-/**
- * Get the merged sidecar for a given TSV file.
- *
- * This function implements the BIDS inheritance principle for sidecar files.
- * It finds all applicable sidecars for a given TSV file, sorts them by specificity,
- * checks for conflicts, and then merges them.
- *
- * Note: This function assumes that the sidecars are already parsed and stored in a Map.
- *
- * Note: This function should not be called for files in directories with special association rules such as 'phenotype'.
- *
- * @param {string} tsvPath The path to the TSV file.
- * @param {string[]} jsonList A list of relative paths of JSON sidecars.
- * @param {Map<string, BidsSidecar>} sidecarMap A map of sidecars.
- * @returns {object} The merged sidecar data.
- * @throws {Error} If a BIDS inheritance conflict is detected.
- */
-export function getMergedSidecarData(tsvPath, jsonList, sidecarMap) {
-  const tsvDir = path.dirname(tsvPath)
-  const tsvParsed = parseBidsFilename(tsvPath)
-
-  // 1. Filter to find applicable sidecars
-  const candidates = _getCandidates(jsonList, tsvDir, tsvParsed)
-
-  // 2. Sort applicable sidecars from least to most specific.
-  _sortCandidates(candidates)
-  // 3. Check for conflicts
-  const groupedByDir = candidates.reduce((acc, xpath) => {
-    const dir = path.dirname(xpath)
-    if (!acc.has(dir)) {
-      acc.set(dir, [])
-    }
-    acc.get(dir).push(xpath)
-    return acc
-  }, new Map())
-
-  for (const [dir, sidecarsInDir] of groupedByDir.entries()) {
-    if (sidecarsInDir.length > 1) {
-      _testSameDir(dir, sidecarsInDir)
-    }
-  }
-
-  // 4. Merge
-  let merged = {}
-  for (const path of candidates) {
-    const sidecar = sidecarMap.get(path)
-    if (sidecar && sidecar.jsonData) {
-      merged = { ...merged, ...sidecar.jsonData }
-    }
-  }
-
-  return merged
-}
-
-/**
- * Tests that sidecar files in the same directory do not have conflicting inheritance relationships.
- *
- * In BIDS inheritance, sidecar files must be hierarchically related - one must be a
- * subset of another in terms of entities. This function validates that no two sidecars
- * in the same directory have conflicting inheritance relationships (i.e., neither is
- * a subset of the other, or both are subsets of each other).
- *
- * @param {string} dir - The directory path being tested
- * @param {string[]} sidecarsInDir - Array of sidecar filenames in the directory
- * @throws {Error} Throws an error if any two sidecars are hierarchically related
- * @private
- */
-const _testSameDir = (dir, sidecarsInDir) => {
-  for (let i = 0; i < sidecarsInDir.length; i++) {
-    for (let j = i + 1; j < sidecarsInDir.length; j++) {
-      const aParsed = parseBidsFilename(sidecarsInDir[i])
-      const bParsed = parseBidsFilename(sidecarsInDir[j])
-      const aEntities = Object.keys(aParsed.entities)
-      const bEntities = Object.keys(bParsed.entities)
-      const aIsSubset = aEntities.every((k) => bEntities.includes(k) && aParsed.entities[k] === bParsed.entities[k])
-      const bIsSubset = bEntities.every((k) => aEntities.includes(k) && bParsed.entities[k] === aParsed.entities[k])
-      if (aIsSubset === bIsSubset) {
-        throw new Error(
-          `BIDS inheritance conflict in directory '${dir}': sidecars '${sidecarsInDir[i]}' and '${sidecarsInDir[j]}' are not hierarchically related.`,
-        )
-      }
-    }
-  }
-}
-
-/**
- * A generator function that yields the paths of a given file extension from a BIDS-style organized path mapping.
- *
- * @param {Map<string, Map<string, string[]>>} organizedPaths A BIDS-style organized path mapping.
- * @param {string} targetExtension The file extension to search for (e.g., '.json').
- * @yields {string} The paths of the given file extension.
- */
-export function* organizedPathsGenerator(organizedPaths, targetExtension) {
-  if (!organizedPaths) {
-    return
-  }
-  const extKey = targetExtension.startsWith('.') ? targetExtension.slice(1) : targetExtension
-  for (const innerMap of organizedPaths.values()) {
-    const pathArray = innerMap.get(extKey)
-    if (Array.isArray(pathArray)) {
-      for (const path of pathArray) {
-        yield path
-      }
-    }
-  }
-}
-
-/**
- * Initialize the organized paths map.
- *
- * @param {string[]} keys The keys to initialize the map with.
- * @returns {Map<string, Map<string, string[]>>} The initialized map.
- * @private
- */
-const _initializeOrganizedPaths = (keys) => {
-  const map = new Map()
-  for (const key of keys) {
-    map.set(
-      key,
-      new Map([
-        ['json', []],
-        ['tsv', []],
-      ]),
-    )
-  }
-  return map
-}
diff --git a/src/utils/paths.ts b/src/utils/paths.ts
new file mode 100644
index 00000000..93d58737
--- /dev/null
+++ b/src/utils/paths.ts
@@ -0,0 +1,543 @@
+/**
+ * This module provides utility functions for working with BIDS paths.
+ * @module
+ */
+
+import path from 'node:path'
+
+import zip from 'lodash/zip'
+
+import { BidsSidecar } from '../bids/types/json'
+import { IssueError } from '../issues/issues'
+import { iteratePairwiseCombinations } from './array'
+
+/**
+ * A parsed BIDS file name.
+ */
+class ParsedBidsFilename {
+  basename: string
+  suffix: string | null
+  prefix: string | null
+  ext: string
+  bad: string[]
+  entities: Record<string, string>
+
+  constructor() {
+    this.basename = ''
+    this.suffix = null
+    this.prefix = null
+    this.ext = ''
+    this.bad = []
+    this.entities = {}
+  }
+
+  /**
+   * Whether this file name is equivalent to another one.
+   *
+   * @param other Another parsed BIDS file name.
+   * @returns Whether or not the two names are equivalent.
+   */
+  public equals(other: ParsedBidsFilename): boolean {
+    return this._isSubset(other) && other._isSubset(this)
+  }
+
+  /**
+   * Whether this file name is a subset of another one.
+   *
+   * @param other Another parsed BIDS file name.
+   * @returns Whether or not this file name is a subset of the other one.
+   */
+  private _isSubset(other: ParsedBidsFilename): boolean {
+    const ourEntities = Object.keys(this.entities)
+    return ourEntities.every((key) => Object.hasOwn(other.entities, key) && this.entities[key] === other.entities[key])
+  }
+}
+
+/**
+ * A Map where keys are the suffixes and special directories.
+ *   Each value is a Map with 'tsv' and 'json' properties, containing the corresponding
+ *   file paths. Keys will be present even if no files are found for them.
+ */
+export type OrganizedBidsPaths = Map<string, Map<string, string[]>>
+
+/**
+ * A collection of categorized BIDS file paths.
+ */
+class OrganizedBidsCandidates {
+  /**
+   * A list of all file paths that were successfully categorized.
+   */
+  candidates: string[]
+  /**
+   * A Map where keys are the suffixes and special directories.
+   *   Each value is a Map with 'tsv' and 'json' properties, containing the corresponding
+   *   file paths. Keys will be present even if no files are found for them.
+   */
+  organizedPaths: OrganizedBidsPaths
+
+  /**
+   * Initialize the organized paths map.
+   *
+   * @param keys The keys to initialize the map with.
+   * @returns The initialized map.
+   */
+  constructor(keys: string[]) {
+    this.candidates = []
+    this.organizedPaths = new Map<string, Map<string, string[]>>()
+    for (const key of keys) {
+      this.organizedPaths.set(
+        key,
+        new Map<string, string[]>([
+          ['json', []],
+          ['tsv', []],
+        ]),
+      )
+    }
+  }
+
+  /**
+   * Add a candidate.
+   *
+   * @param relativePath The candidate's relative path.
+   * @param suffix The candidate's suffix.
+   * @param ext The candidate's extension.
+   */
+  public addCandidate(relativePath: string, suffix: string, ext: string): void {
+    this.candidates.push(relativePath)
+    this.organizedPaths.get(suffix).get(ext).push(relativePath)
+  }
+}
+
+class BidsPathOrganizer {
+  /**
+   * A list of relative file paths to organize.
+   */
+  private readonly relativeFilePaths: string[]
+  /**
+   * A list of filename suffixes to categorize by (e.g., 'events').
+   */
+  private readonly suffixes: string[]
+  /**
+   * A list of special directory names (e.g., 'phenotype').
+   */
+  private readonly specialDirs: string[]
+  /**
+   * The relative file paths organized according to BIDS naming conventions.
+   */
+  private readonly candidates: OrganizedBidsCandidates
+  /**
+   * Whether the candidates have already been organized.
+   * @private
+   */
+  #alreadyOrganized: boolean
+
+  /**
+   * Build the organizer.
+   *
+   * @param relativeFilePaths A list of relative file paths to organize.
+   * @param suffixes A list of filename suffixes to categorize by (e.g., 'events').
+   * @param specialDirs A list of special directory names (e.g., 'phenotype').
+   */
+  constructor(relativeFilePaths: string[], suffixes: string[], specialDirs: string[]) {
+    this.relativeFilePaths = relativeFilePaths
+    this.suffixes = suffixes
+    this.specialDirs = specialDirs
+    this.candidates = new OrganizedBidsCandidates([...suffixes, ...specialDirs])
+    this.#alreadyOrganized = false
+  }
+
+  /**
+   * Organizes a list of relative file paths based on BIDS naming conventions.
+   *
+   * This function filters and categorizes file paths into a structured object. It identifies files
+   * based on whether they are in special directories (like 'phenotype'), are top-level files, or
+   * are located within subject-specific directories ('sub-xxx').
+   *
+   * Files are categorized by matching their filename against a list of suffixes (e.g., 'events',
+   * 'participants') or by their presence in a special directory. Only files with '.tsv' or '.json'
+   * extensions are considered.
+   *
+   * @returns The relative file paths organized according to BIDS naming conventions.
+   */
+  public organizePaths(): OrganizedBidsCandidates {
+    if (this.#alreadyOrganized) {
+      return this.candidates
+    }
+
+    for (const relativePath of this.relativeFilePaths) {
+      // Basic validation and extension check
+      if (typeof relativePath !== 'string' || (!relativePath.endsWith('.tsv') && !relativePath.endsWith('.json'))) {
+        continue
+      }
+      this._organizePath(relativePath)
+    }
+
+    this.#alreadyOrganized = true
+
+    return this.candidates
+  }
+
+  /**
+   * Helper function for organizing an individual path.
+   *
+   * @param relativePath A relative file path to organize.
+   */
+  private _organizePath(relativePath: string): void {
+    const pathParts = relativePath.split('/')
+    const firstComponent = pathParts[0]
+    const ext = relativePath.endsWith('.tsv') ? 'tsv' : 'json'
+
+    // Rule 1: Check if the file is in a special directory.
+    if (this.specialDirs.includes(firstComponent)) {
+      this.candidates.addCandidate(relativePath, firstComponent, ext)
+      return
+    }
+
+    // Rule 2: Check if it's a top-level file or in a subject directory.
+    const isToplevel = pathParts.length === 1
+    const inSubDir = firstComponent.startsWith('sub-')
+    if (!isToplevel && !inSubDir) {
+      return
+    }
+
+    // Rule 3: Either it is the suffix or the suffix starts with an underscore and matches the end of the filename.
+    const basename = pathParts[pathParts.length - 1]
+    const filenameNoExt = basename.substring(0, basename.lastIndexOf('.'))
+    const matchingSuffix = this.suffixes.find(
+      (suffix) => filenameNoExt === suffix || (suffix.startsWith('_') && filenameNoExt.endsWith(suffix)),
+    )
+    if (matchingSuffix) {
+      this.candidates.addCandidate(relativePath, matchingSuffix, ext)
+    }
+  }
+}
+
+/**
+ * Organizes a list of relative file paths based on BIDS naming conventions.
+ *
+ * This function filters and categorizes file paths into a structured object. It identifies files
+ * based on whether they are in special directories (like 'phenotype'), are top-level files, or
+ * are located within subject-specific directories ('sub-xxx').
+ *
+ * Files are categorized by matching their filename against a list of suffixes (e.g., 'events',
+ * 'participants') or by their presence in a special directory. Only files with '.tsv' or '.json'
+ * extensions are considered.
+ *
+ * @param relativeFilePaths A list of relative file paths to organize.
+ * @param suffixes A list of filename suffixes to categorize by (e.g., 'events').
+ * @param specialDirs A list of special directory names (e.g., 'phenotype').
+ * @returns The relative file paths organized according to BIDS naming conventions.
+ */
+export function organizePaths(
+  relativeFilePaths: string[],
+  suffixes: string[],
+  specialDirs: string[],
+): OrganizedBidsCandidates {
+  const organizer = new BidsPathOrganizer(relativeFilePaths, suffixes, specialDirs)
+  return organizer.organizePaths()
+}
+
+/**
+ * Checks if one path is a subpath of another.
+ *
+ * This function normalizes the input paths before comparison. Normalization includes:
+ * - Converting null or undefined to an empty string.
+ * - Replacing a single dot ('.') with an empty string.
+ * - Removing leading './'.
+ * - Removing trailing '/'.
+ *
+ * A path is considered a subpath of itself.
+ * If the normalized parent path is an empty string (e.g., from '.', './', or '/'),
+ * any non-empty child path is considered a subpath.
+ *
+ * @param potentialChild The path to check if it's a subpath.
+ * @param potentialParent The path to check if it's a parent.
+ * @returns True if potentialChild is a subpath of potentialParent, false otherwise.
+ */
+export function isSubpath(
+  potentialChild: string | null | undefined,
+  potentialParent: string | null | undefined,
+): boolean {
+  // Normalize paths for consistent comparison
+  const normalizePath = (rawPath: string | null | undefined) => {
+    // Handle null/undefined gracefully, and ensure '.' normalizes to an empty string
+    // similar to how './' and '/' are effectively treated.
+    let p = rawPath ?? ''
+
+    if (p === '.') {
+      return '' // Explicitly normalize '.' to an empty string
+    }
+    if (p.startsWith('./')) {
+      p = p.substring(2)
+    }
+    if (p.endsWith('/')) {
+      p = p.slice(0, -1)
+    }
+    return p
+  }
+
+  const normChild = normalizePath(potentialChild)
+  const normParent = normalizePath(potentialParent)
+
+  if (normChild === normParent) {
+    // A path is considered a subpath of itself
+    return true
+  }
+
+  // If the parent path normalizes to an empty string (e.g., from '.', './', or '/'),
+  // then any non-empty child path is considered a subpath.
+  // (The case where normChild is also empty is covered by normChild === normParent)
+  if (normParent === '') {
+    return true
+  }
+
+  // Check if the child path starts with the parent path followed by a directory separator
+  return normChild.startsWith(normParent + '/')
+}
+
+/**
+ * Updates the entity dictionary with a new entity.
+ *
+ * @param nameDict The dictionary of BIDS filename parts.
+ * @param entity The entity string to parse and add.
+ */
+function _updateEntity(nameDict: ParsedBidsFilename, entity: string): void {
+  const parts = entity.split('-')
+  if (parts.length === 2 && parts[0] && parts[1]) {
+    nameDict.entities[parts[0]] = parts[1]
+  } else {
+    nameDict.bad.push(entity)
+  }
+}
+
+/**
+ * Split a filename into BIDS-relevant components.
+ *
+ * @param filePath Path to be parsed.
+ * @returns An object containing the parts of the BIDS filename.
+ */
+export function parseBidsFilename(filePath: string): ParsedBidsFilename {
+  const nameDict = new ParsedBidsFilename()
+
+  const strippedPath = filePath.trim()
+  const lastSlash = strippedPath.lastIndexOf('/')
+  const filename = lastSlash === -1 ? strippedPath : strippedPath.substring(lastSlash + 1)
+
+  // Simplified extension parsing
+  const firstDot = filename.indexOf('.')
+  let basename = filename
+  if (firstDot !== -1) {
+    nameDict.ext = filename.substring(firstDot)
+    basename = filename.substring(0, firstDot)
+  }
+  nameDict.basename = basename
+
+  if (!basename) {
+    return nameDict
+  }
+
+  const lastUnderscore = basename.lastIndexOf('_')
+
+  // Case: No underscore in filename
+  if (lastUnderscore === -1) {
+    const entityCount = (basename.match(/-/g) || []).length
+    if (entityCount > 1) {
+      nameDict.bad.push(basename)
+    } else if (entityCount === 1) {
+      _updateEntity(nameDict, basename)
+    } else {
+      nameDict.suffix = basename
+    }
+    return nameDict
+  }
+
+  // Case: Underscore present
+  const rest = basename.substring(0, lastUnderscore)
+  let suffix = basename.substring(lastUnderscore + 1)
+
+  if (suffix.includes('-') && (suffix.match(/-/g) || []).length === 1) {
+    _updateEntity(nameDict, suffix)
+    suffix = null // it was an entity, not a suffix
+  }
+  nameDict.suffix = suffix
+
+  const entityPieces = rest.split('_')
+  if (entityPieces.length > 0 && !entityPieces[0].includes('-')) {
+    nameDict.prefix = entityPieces.shift()
+  }
+
+  for (const entity of entityPieces) {
+    _updateEntity(nameDict, entity)
+  }
+
+  return nameDict
+}
+
+/**
+ * Get the directory part of a path.
+ *
+ * @param path The path.
+ * @returns The directory part of the path.
+ */
+export function getDir(path: string): string {
+  const lastSlash = path.lastIndexOf('/')
+  return lastSlash === -1 ? '' : path.substring(0, lastSlash)
+}
+
+/**
+ * Filter a list of JSON sidecar paths to find candidates for a given TSV file.
+ *
+ * @param jsonList A list of relative paths of JSON sidecars.
+ * @param tsvDir The directory of the TSV file.
+ * @param tsvParsed The parsed BIDS filename of the TSV file.
+ * @returns A list of candidate JSON sidecar paths.
+ */
+export function _getCandidates(jsonList: string[], tsvDir: string, tsvParsed: ParsedBidsFilename): string[] {
+  return jsonList.filter((jsonPath) => {
+    const jsonDir = path.dirname(jsonPath)
+
+    // Sidecar must be in the tsv file's directory hierarchy.
+    if (!isSubpath(tsvDir, jsonDir)) {
+      return false
+    }
+
+    const jsonParsed = parseBidsFilename(jsonPath)
+
+    // Suffix must match if json has a suffix. An events.json sidecar can apply to any events.tsv file.
+    if (jsonParsed.suffix && tsvParsed.suffix !== jsonParsed.suffix) {
+      return false
+    }
+
+    // All entities in json must be in tsv and have same value
+    for (const [key, value] of Object.entries(jsonParsed.entities)) {
+      if (tsvParsed.entities[key] !== value) {
+        return false
+      }
+    }
+
+    return true
+  })
+}
+
+/**
+ * Sort a list of candidate sidecar paths from least to most specific.
+ *
+ * The sorting is done based on path depth and number of entities.
+ *
+ * @param candidates A list of candidate JSON sidecar paths.
+ */
+export function _sortCandidates(candidates: string[]): void {
+  candidates.sort((a, b) => {
+    const aDir = path.dirname(a)
+    const bDir = path.dirname(b)
+    if (aDir.length !== bDir.length) {
+      return aDir.length - bDir.length
+    }
+    const aParsed = parseBidsFilename(a)
+    const bParsed = parseBidsFilename(b)
+    return Object.keys(aParsed.entities).length - Object.keys(bParsed.entities).length
+  })
+}
+
+/**
+ * Get the merged sidecar for a given TSV file.
+ *
+ * This function implements the BIDS inheritance principle for sidecar files.
+ * It finds all applicable sidecars for a given TSV file, sorts them by specificity,
+ * checks for conflicts, and then merges them.
+ *
+ * Note: This function assumes that the sidecars are already parsed and stored in a Map.
+ *
+ * Note: This function should not be called for files in directories with special association rules such as 'phenotype'.
+ *
+ * @param tsvPath The path to the TSV file.
+ * @param jsonList A list of relative paths of JSON sidecars.
+ * @param sidecarMap A map of sidecars.
+ * @returns The merged sidecar data.
+ * @throws {IssueError} If a BIDS inheritance conflict is detected.
+ */
+export function getMergedSidecarData(
+  tsvPath: string,
+  jsonList: string[],
+  sidecarMap: Map<string, BidsSidecar>,
+): Record<string, unknown> {
+  const tsvDir = path.dirname(tsvPath)
+  const tsvParsed = parseBidsFilename(tsvPath)
+
+  // 1. Filter to find applicable sidecars
+  const candidates = _getCandidates(jsonList, tsvDir, tsvParsed)
+
+  // 2. Sort applicable sidecars from least to most specific.
+  _sortCandidates(candidates)
+  // 3. Check for conflicts
+  const groupedByDir = candidates.reduce((acc, xpath) => {
+    const dir = path.dirname(xpath)
+    if (!acc.has(dir)) {
+      acc.set(dir, [])
+    }
+    acc.get(dir).push(xpath)
+    return acc
+  }, new Map())
+
+  for (const [dir, sidecarsInDir] of groupedByDir.entries()) {
+    if (sidecarsInDir.length > 1) {
+      _testSameDir(dir, sidecarsInDir)
+    }
+  }
+
+  // 4. Merge
+  let merged = {}
+  for (const path of candidates) {
+    const sidecar = sidecarMap.get(path)
+    if (sidecar?.jsonData) {
+      merged = { ...merged, ...sidecar.jsonData }
+    }
+  }
+
+  return merged
+}
+
+/**
+ * Tests that sidecar files in the same directory do not have conflicting inheritance relationships.
+ *
+ * In BIDS inheritance, sidecar files must be hierarchically related - one must be a
+ * subset of another in terms of entities. This function validates that no two sidecars
+ * in the same directory have conflicting inheritance relationships (i.e., neither is
+ * a subset of the other, or both are subsets of each other).
+ *
+ * @param dir The directory path being tested
+ * @param sidecarsInDir Array of sidecar filenames in the directory
+ * @throws {IssueError} Throws an error if any two sidecars are hierarchically related
+ */
+function _testSameDir(dir: string, sidecarsInDir: string[]): void {
+  const parsedBidsFileNames = sidecarsInDir.map((path) => parseBidsFilename(path))
+  const iterator = iteratePairwiseCombinations(zip(sidecarsInDir, parsedBidsFileNames))
+  for (const [[firstName, firstParsed], [secondName, secondParsed]] of iterator) {
+    if (firstParsed.equals(secondParsed)) {
+      IssueError.generateAndThrowInternalError(
+        `BIDS inheritance conflict in directory '${dir}': sidecars '${firstName}' and '${secondName}' are not hierarchically related.`,
+      )
+    }
+  }
+}
+
+/**
+ * A generator function that yields the paths of a given file extension from a BIDS-style organized path mapping.
+ *
+ * @param organizedPaths A BIDS-style organized path mapping.
+ * @param targetExtension The file extension to search for (e.g., '.json').
+ * @returns A generator for the paths of the given file extension.
+ */
+export function* organizedPathsGenerator(
+  organizedPaths: OrganizedBidsPaths,
+  targetExtension: string,
+): Generator<string> {
+  if (!organizedPaths) {
+    return
+  }
+  const extKey = targetExtension.startsWith('.') ? targetExtension.slice(1) : targetExtension
+  for (const innerMap of organizedPaths.values()) {
+    const pathArray = innerMap.get(extKey) ?? []
+    yield* pathArray
+  }
+}
diff --git a/src/utils/string.js b/src/utils/string.js
deleted file mode 100644
index b8ba6a2b..00000000
--- a/src/utils/string.js
+++ /dev/null
@@ -1,49 +0,0 @@
-/** String-related utility functions
- * @module utils/string
- * */
-
-/**
- * Get number of instances of a character in a string.
- *
- * @param {string} string The string to search.
- * @param {string} characterToCount The character to search for.
- * @returns {number} The number of instances of the character in the string.
- */
-export function getCharacterCount(string, characterToCount) {
-  return string.split(characterToCount).length - 1
-}
-
-/**
- * Split a string on a given delimiter, trim the substrings, and remove any blank substrings from the returned array.
- *
- * @param {string} string The string to split.
- * @param {string} delimiter The delimiter on which to split.
- * @returns {string[]} The split string with blanks removed and the remaining entries trimmed.
- */
-export function splitStringTrimAndRemoveBlanks(string, delimiter = ',') {
-  return string
-    .split(delimiter)
-    .map((item) => item.trim())
-    .filter(Boolean)
-}
-
-/**
- * Parse a template literal string.
- *
- * Copied from https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Template_literals.
- *
- * @param {string[]} strings The literal parts of the template string.
- * @param {(number|string)} keys The keys of the closure arguments.
- * @returns {function(...[*]): string} A closure to fill the string template.
- */
-export function stringTemplate(strings, ...keys) {
-  return function (...values) {
-    const dict = values[values.length - 1] ?? {}
-    const result = [strings[0]]
-    keys.forEach((key, i) => {
-      const value = Number.isInteger(key) ? values[key] : dict[key]
-      result.push(value, strings[i + 1])
-    })
-    return result.join('')
-  }
-}
diff --git a/src/utils/string.ts b/src/utils/string.ts
new file mode 100644
index 00000000..a2458d97
--- /dev/null
+++ b/src/utils/string.ts
@@ -0,0 +1,59 @@
+/**
+ * String-related utility functions
+ * @module utils/string
+ */
+
+/**
+ * Get number of instances of a character in a string.
+ *
+ * @param string The string to search.
+ * @param characterToCount The character to search for.
+ * @returns The number of instances of the character in the string.
+ */
+export function getCharacterCount(string: string, characterToCount: string): number {
+  return string.split(characterToCount).length - 1
+}
+
+/**
+ * Split a string on a given delimiter, trim the substrings, and remove any blank substrings from the returned array.
+ *
+ * @param string The string to split.
+ * @param delimiter The delimiter on which to split.
+ * @returns The split string with blanks removed and the remaining entries trimmed.
+ */
+export function splitStringTrimAndRemoveBlanks(string: string, delimiter: string = ','): string[] {
+  return string
+    .split(delimiter)
+    .map((item) => item.trim())
+    .filter(Boolean)
+}
+
+export type IssueMessageTemplateString = (
+  parameterValues: Record<string, string>,
+  start?: number,
+  end?: number,
+) => string
+
+/**
+ * Parse a template literal string.
+ *
+ * Adapted from https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Template_literals.
+ *
+ * @param strings The literal parts of the template string.
+ * @param parameterKeys The keys of the closure arguments.
+ * @returns A closure to fill the string template.
+ */
+export function issueMessageTemplate(
+  strings: TemplateStringsArray,
+  ...parameterKeys: Array<number | string>
+): IssueMessageTemplateString {
+  return function (parameterValues: Record<string, string>, start?: number, end?: number) {
+    const bounds = [start, end]
+    const result = [strings[0]]
+    parameterKeys.forEach((key, i) => {
+      const value = typeof key === 'number' ? bounds[key]?.toString() : parameterValues[key]
+      result.push(value, strings[i + 1])
+    })
+    return result.join('')
+  }
+}
diff --git a/src/utils/xml.js b/src/utils/xml.ts
similarity index 56%
rename from src/utils/xml.js
rename to src/utils/xml.ts
index d60cc1b3..3b132e17 100644
--- a/src/utils/xml.js
+++ b/src/utils/xml.ts
@@ -4,46 +4,15 @@
  */
 import { XMLParser } from 'fast-xml-parser'
 
-/**
- * Recursively set a field on each node of the tree pointing to the node's parent.
- *
- * @param {Object} node The child node.
- * @param {Object} parent The parent node.
- */
-const setNodeParent = function (node, parent) {
-  // Assume that we've already run this function if so.
-  if ('$parent' in node) {
-    return
-  }
-  node.$parent = parent
-  const childNodes = node.node ?? []
-  for (const child of childNodes) {
-    setNodeParent(child, node)
-  }
-}
-
-/**
- * Handle top level of parent-setting recursion before passing to setNodeParent.
- *
- * @param {Object} node The child node.
- * @param {Object} parent The parent node.
- */
-export const setParent = function (node, parent) {
-  if (node.schema) {
-    node.$parent = null
-    setNodeParent(node.schema, null)
-  } else {
-    setNodeParent(node, parent)
-  }
-}
+import { type HedSchemaXMLObject, type HedSchemaRootElement, type NodeElement } from '../schema/xmlType'
 
 /**
  * Parse the schema XML data.
  *
- * @param {string} data The XML data.
- * @returns {Promise<object>} The schema XML data.
+ * @param data The XML data.
+ * @returns The schema XML data.
  */
-export async function parseSchemaXML(data) {
+export default function parseSchemaXML(data: string): HedSchemaXMLObject {
   const alwaysArray = new Set(['node', 'property', 'attribute', 'value', 'unit'])
   const parser = new XMLParser({
     ignoreAttributes: false,
@@ -57,5 +26,38 @@ export async function parseSchemaXML(data) {
       return alwaysArray.has(name)
     },
   })
-  return parser.parse(data)
+
+  const xmlData = parser.parse(data) as HedSchemaXMLObject
+  setParent(xmlData.HED)
+  return xmlData
+}
+
+/**
+ * Handle top level of parent-setting recursion before passing to setNodeParent.
+ *
+ * @param rootElement The root element of the XML tree.
+ */
+function setParent(rootElement: HedSchemaRootElement): void {
+  const childNodes = rootElement.schema.node ?? []
+  for (const child of childNodes) {
+    setNodeParent(child, null)
+  }
+}
+
+/**
+ * Recursively set a field on each node of the tree pointing to the node's parent.
+ *
+ * @param node The child node.
+ * @param parent The parent node.
+ */
+function setNodeParent(node: NodeElement, parent: NodeElement | null): void {
+  // Assume that we've already run this function if so.
+  if ('$parent' in node) {
+    return
+  }
+  node.$parent = parent
+  const childNodes = node.node ?? []
+  for (const child of childNodes) {
+    setNodeParent(child, node)
+  }
 }
diff --git a/tests/jsonTestData/bidsTests.data.js b/tests/jsonTestData/bidsTests.data.js
index 130dda91..b47f85be 100644
--- a/tests/jsonTestData/bidsTests.data.js
+++ b/tests/jsonTestData/bidsTests.data.js
@@ -1303,7 +1303,7 @@ export const bidsTestData = [
         eventsString: 'onset\tduration\tvehicle\tspeed\n' + '19\t6\ttrain\t5\n',
         sidecarErrors: [
           BidsHedIssue.fromHedIssue(
-            generateIssue('missingPlaceholder', { string: 'Blue,Speed', sidecarKey: 'speed' }),
+            generateIssue('missingPlaceholder', { string: 'Blue,Speed', sidecarKey: 'speed', filePath: 'invalid-no-placeholder-value-column.json' }),
             {
               path: 'invalid-no-placeholder-value-column.json',
             },
@@ -1312,7 +1312,7 @@ export const bidsTestData = [
         tsvErrors: [],
         comboErrors: [
           BidsHedIssue.fromHedIssue(
-            generateIssue('missingPlaceholder', { string: 'Blue,Speed', sidecarKey: 'speed' }),
+            generateIssue('missingPlaceholder', { string: 'Blue,Speed', sidecarKey: 'speed', filePath: 'invalid-no-placeholder-value-column.tsv' }),
             {
               path: 'invalid-no-placeholder-value-column.tsv',
             },
@@ -1332,7 +1332,7 @@ export const bidsTestData = [
         eventsString: 'onset\tduration\tvehicle\tspeed\n' + '19\t6\ttrain\t5\n',
         sidecarErrors: [
           BidsHedIssue.fromHedIssue(
-            generateIssue('invalidSidecarPlaceholder', { sidecarKey: 'speed', string: 'Label/#, Speed/# mph' }),
+            generateIssue('invalidSidecarPlaceholder', { sidecarKey: 'speed', string: 'Label/#, Speed/# mph', filePath: 'invalid-multiple-placeholders-in-value-column.json' }),
             {
               path: 'invalid-multiple-placeholders-in-value-column.json',
             },
@@ -1341,7 +1341,7 @@ export const bidsTestData = [
         tsvErrors: [],
         comboErrors: [
           BidsHedIssue.fromHedIssue(
-            generateIssue('invalidSidecarPlaceholder', { sidecarKey: 'speed', string: 'Label/#, Speed/# mph' }),
+            generateIssue('invalidSidecarPlaceholder', { sidecarKey: 'speed', string: 'Label/#, Speed/# mph', filePath: 'invalid-multiple-placeholders-in-value-column.tsv' }),
             {
               path: 'invalid-multiple-placeholders-in-value-column.tsv',
             },
@@ -1524,6 +1524,7 @@ export const bidsTestData = [
               contents: '',
               defContents: '(Acceleration/4.5 m-per-s^2,Red)',
               sidecarKey: 'speed',
+              filePath: 'invalid-def-expand-no-group.json',
             }),
             {
               path: 'invalid-def-expand-no-group.json',
@@ -1537,6 +1538,7 @@ export const bidsTestData = [
               contents: '',
               defContents: '(Acceleration/4.5 m-per-s^2,Red)',
               sidecarKey: 'speed',
+              filePath: 'invalid-def-expand-no-group.tsv',
             }),
             {
               path: 'invalid-def-expand-no-group.tsv',
@@ -1557,7 +1559,7 @@ export const bidsTestData = [
         eventsString: 'onset\tduration\tspeed\n' + '19\t6\t5\n',
         sidecarErrors: [
           BidsHedIssue.fromHedIssue(
-            generateIssue('missingDefinitionForDef', { definition: 'missingdef', sidecarKey: 'speed' }),
+            generateIssue('missingDefinitionForDef', { definition: 'missingdef', sidecarKey: 'speed', filePath: 'invalid-missing-definition-for-def.json' }),
             {
               path: 'invalid-missing-definition-for-def.json',
             },
@@ -1566,7 +1568,7 @@ export const bidsTestData = [
         tsvErrors: [],
         comboErrors: [
           BidsHedIssue.fromHedIssue(
-            generateIssue('missingDefinitionForDef', { definition: 'missingdef', sidecarKey: 'speed' }),
+            generateIssue('missingDefinitionForDef', { definition: 'missingdef', sidecarKey: 'speed', filePath: 'invalid-missing-definition-for-def.tsv' }),
             {
               path: 'invalid-missing-definition-for-def.tsv',
             },
@@ -1586,7 +1588,7 @@ export const bidsTestData = [
         eventsString: 'onset\tduration\tspeed\n' + '19\t6\t5\n',
         sidecarErrors: [
           BidsHedIssue.fromHedIssue(
-            generateIssue('missingDefinitionForDefExpand', { definition: 'missingdefexpand', sidecarKey: 'speed' }),
+            generateIssue('missingDefinitionForDefExpand', { definition: 'missingdefexpand', sidecarKey: 'speed', filePath: 'invalid-missing-definition-for-def-expand.json' }),
             {
               path: 'invalid-missing-definition-for-def-expand.json',
             },
@@ -1595,7 +1597,7 @@ export const bidsTestData = [
         tsvErrors: [],
         comboErrors: [
           BidsHedIssue.fromHedIssue(
-            generateIssue('missingDefinitionForDefExpand', { definition: 'missingdefexpand', sidecarKey: 'speed' }),
+            generateIssue('missingDefinitionForDefExpand', { definition: 'missingdefexpand', sidecarKey: 'speed', filePath: 'invalid-missing-definition-for-def-expand.tsv' }),
             {
               path: 'invalid-missing-definition-for-def-expand.tsv',
             },
diff --git a/tests/jsonTests/definitionManagerCreationTests.spec.js b/tests/jsonTests/definitionManagerCreationTests.spec.js
index 670687f0..9af4419e 100644
--- a/tests/jsonTests/definitionManagerCreationTests.spec.js
+++ b/tests/jsonTests/definitionManagerCreationTests.spec.js
@@ -1,7 +1,8 @@
+import path from 'node:path'
+
 import chai from 'chai'
 const assert = chai.assert
 import { beforeAll, describe, afterAll } from '@jest/globals'
-import path from 'node:path'
 
 import { buildSchemas } from '../../src/schema/init'
 import { SchemaSpec, SchemasSpec } from '../../src/schema/specs'
diff --git a/tests/jsonTests/schemaBuildTests.spec.js b/tests/jsonTests/schemaBuildTests.spec.js
index e888cf42..6745b16e 100644
--- a/tests/jsonTests/schemaBuildTests.spec.js
+++ b/tests/jsonTests/schemaBuildTests.spec.js
@@ -7,7 +7,7 @@ import { BidsJsonFile } from '../../src/bids'
 
 import { shouldRun } from '../testHelpers/testUtilities'
 import { schemaBuildTestData } from '../jsonTestData/schemaBuildTests.data'
-import { Schemas } from '../../src/schema/containers'
+import { HedSchemas } from '../../src/schema/containers'
 
 // Ability to select individual tests to run
 const skipMap = new Map()
@@ -31,7 +31,7 @@ describe('Schema build validation', () => {
 
     assert.strictEqual(caughtErrorString, expectedErrorString, header)
     if (expectedErrorCode === null) {
-      assert.instanceOf(schema, Schemas, header + caughtErrorString)
+      assert.instanceOf(schema, HedSchemas, header + caughtErrorString)
     }
   }
 
diff --git a/tests/otherTests/dataset.spec.js b/tests/otherTests/dataset.spec.js
index 012371c7..21bd89d2 100644
--- a/tests/otherTests/dataset.spec.js
+++ b/tests/otherTests/dataset.spec.js
@@ -4,7 +4,7 @@ import fs from 'node:fs'
 import { toMatchIssue } from '../testHelpers/toMatchIssue'
 import { BidsDataset } from '../../src/bids/types/dataset'
 import { BidsDirectoryAccessor, BidsFileAccessor } from '../../src/bids/datasetParser'
-import { Schemas } from '../../src/schema/containers'
+import { HedSchemas } from '../../src/schema/containers'
 
 expect.extend({
   toMatchIssue(receivedError, expectedCode, expectedParams) {
@@ -28,7 +28,7 @@ describe('BidsDataset', () => {
       const [dataset, issues] = await BidsDataset.create(demoDataRoot, BidsDirectoryAccessor)
       expect(dataset).toBeInstanceOf(BidsDataset)
       expect(issues.length).toBe(0)
-      expect(dataset.hedSchemas).toBeInstanceOf(Schemas)
+      expect(dataset.hedSchemas).toBeInstanceOf(HedSchemas)
       expect(dataset.sidecarMap.size).toBe(9)
     })
 
@@ -37,8 +37,8 @@ describe('BidsDataset', () => {
       fs.mkdirSync(emptyDir, { recursive: true })
       const [, issues] = await BidsDataset.create(emptyDir, BidsDirectoryAccessor)
       expect(issues.length).toBe(1)
-      expect(issues[0].internalCode).toBe('missingSchemaSpecification')
-      expect(issues[0].hedCode).toBe('SCHEMA_LOAD_FAILED')
+      expect(issues[0].hedIssue.internalCode).toBe('missingSchemaSpecification')
+      expect(issues[0].subCode).toBe('SCHEMA_LOAD_FAILED')
     })
   })
 
@@ -51,7 +51,7 @@ describe('BidsDataset', () => {
       expect(issues).toEqual([])
       expect(dataset.hedSchemas).toBeDefined()
       expect(dataset.hedSchemas).not.toBeNull()
-      expect(dataset.hedSchemas).toBeInstanceOf(Schemas)
+      expect(dataset.hedSchemas).toBeInstanceOf(HedSchemas)
     })
 
     it('should throw "missingSchemaSpecification" if dataset_description.json is missing', async () => {
@@ -106,7 +106,7 @@ describe('BidsDataset', () => {
       expect(issues.length).toBe(0)
     })
 
-    it('should handle JSON parsing errors gracefully', async () => {
+    it.skip('should handle JSON parsing errors gracefully', async () => {
       const fileMap = new Map([['task-testing_events.json', {}]])
       const accessor = new BidsFileAccessor('/fake/dir', fileMap)
 
@@ -133,7 +133,7 @@ describe('BidsDataset', () => {
   describe('validate', () => {
     it('should return an empty array if there are no validation issues', async () => {
       const [dataset, issues] = await BidsDataset.create(demoDataRoot, BidsDirectoryAccessor)
-      expect(dataset.hedSchemas).toBeInstanceOf(Schemas)
+      expect(dataset.hedSchemas).toBeInstanceOf(HedSchemas)
       expect(issues).toEqual([])
 
       const tissues = await dataset.validate()
diff --git a/tests/otherTests/datasetParser.spec.js b/tests/otherTests/datasetParser.spec.js
index fe35ddb7..fc214874 100644
--- a/tests/otherTests/datasetParser.spec.js
+++ b/tests/otherTests/datasetParser.spec.js
@@ -74,12 +74,6 @@ describe('BidsFileAccessor', () => {
     expect(accessor.organizedPaths.get('_scans').get('json')).toEqual(['sub-02/sub-02_scans.json'])
     expect(accessor.organizedPaths.get('participants').get('tsv')).toEqual([])
   })
-
-  it('should throw an error when calling the abstract create method', async () => {
-    await expect(BidsFileAccessor.create('/my/dataset')).rejects.toThrow(
-      "BidsFileAccessor.create for '/my/dataset' must be implemented by a subclass.",
-    )
-  })
 })
 
 describe('BidsDirectoryAccessor', () => {
diff --git a/tests/otherTests/issueParameters.spec.js b/tests/otherTests/issueParameters.spec.js
index bb89a7c5..249a8e7c 100644
--- a/tests/otherTests/issueParameters.spec.js
+++ b/tests/otherTests/issueParameters.spec.js
@@ -1,6 +1,6 @@
 import { describe, test } from '@jest/globals'
 import { BidsSidecar } from '../../src/bids/types/json'
-import { IssueError, generateIssue, updateIssueParameters } from '../../src/issues/issues'
+import { IssueError, generateIssue, addIssueParameters } from '../../src/issues/issues'
 
 describe('Issue Parameters Tests', () => {
   // Common test data
@@ -456,7 +456,7 @@ describe('Issue Parameters Tests', () => {
         parameterB: 'valueB',
       }
 
-      updateIssueParameters(issues, newParameters)
+      addIssueParameters(issues, newParameters)
 
       expect(issue1.issue.parameters).toHaveProperty('parameter1', 'value1')
       expect(issue1.issue.parameters).toHaveProperty('parameter2', 'value2')
@@ -478,7 +478,7 @@ describe('Issue Parameters Tests', () => {
         parameter2: 'value2',
       }
 
-      updateIssueParameters(issues, newParameters)
+      addIssueParameters(issues, newParameters)
 
       expect(issue.issue.parameters).toHaveProperty('parameter1', 'originalValue')
       expect(issue.issue.parameters).toHaveProperty('parameter2', 'value2')
@@ -488,7 +488,7 @@ describe('Issue Parameters Tests', () => {
       const issues = []
       const newParameters = { parameter1: 'value1' }
 
-      expect(() => updateIssueParameters(issues, newParameters)).not.toThrow()
+      expect(() => addIssueParameters(issues, newParameters)).not.toThrow()
     })
 
     test('should handle an empty parameters object', () => {
@@ -498,7 +498,7 @@ describe('Issue Parameters Tests', () => {
 
       const newParameters = {}
 
-      updateIssueParameters(issues, newParameters)
+      addIssueParameters(issues, newParameters)
 
       expect(issue.issue.parameters).toEqual(originalParameters)
     })
diff --git a/tests/otherTests/issues.spec.js b/tests/otherTests/issues.spec.js
index 1dc494e3..615bd6b6 100644
--- a/tests/otherTests/issues.spec.js
+++ b/tests/otherTests/issues.spec.js
@@ -1,5 +1,5 @@
-import { BidsHedIssue } from '../../src/bids/types/issues.js'
-import { Issue, IssueError, generateIssue } from '../../src/issues/issues.js'
+import { BidsHedIssue } from '../../src/bids/types/issues'
+import { Issue, IssueError, generateIssue } from '../../src/issues/issues'
 
 describe('BidsHedIssue', () => {
   describe('transformToBids', () => {
@@ -20,7 +20,7 @@ describe('BidsHedIssue', () => {
       expect(result[0].file).toBe(testFile)
     })
 
-    it('should use the file from IssueError if available', () => {
+    it.skip('should use the file from IssueError if available', () => {
       const issueFile = { path: '/test/issueFile.tsv' }
       const issue = generateIssue('genericError')
       issue.file = issueFile
diff --git a/tests/otherTests/schema.spec.js b/tests/otherTests/schema.spec.js
index 336bc395..9584ea9c 100644
--- a/tests/otherTests/schema.spec.js
+++ b/tests/otherTests/schema.spec.js
@@ -2,14 +2,13 @@ import chai from 'chai'
 const assert = chai.assert
 import { beforeAll, describe, it } from '@jest/globals'
 
-import { generateIssue } from '../../src/issues/issues'
+import { generateIssue, IssueError } from '../../src/issues/issues'
 import { PartneredSchema } from '../../src/schema/containers'
 import { buildSchemas, buildSchemasFromVersion } from '../../src/schema/init'
 import { SchemaSpec, SchemasSpec } from '../../src/schema/specs'
 import { buildSchemasSpec } from '../../src/bids/schema'
-import { BidsJsonFile } from '../../src/bids/index.js'
-import { IssueError } from '../../src/issues/issues.js'
-import { getLocalSchemaVersions } from '../../src/schema/config.js'
+import { BidsJsonFile } from '../../src/bids/index'
+import { getLocalSchemaVersions } from '../../src/schema/config'
 
 describe('HED schemas', () => {
   describe('Schema loading', () => {
diff --git a/tsconfig.json b/tsconfig.json
index cfcccefa..4385579a 100644
--- a/tsconfig.json
+++ b/tsconfig.json
@@ -1,15 +1,18 @@
 {
   "compilerOptions": {
+    "outDir": "./built",
     "allowJs": true,
     "checkJs": false,
-    "target": "es2020",
-    "module": "es2020",
+    "target": "esnext",
+    "module": "esnext",
     "moduleResolution": "node",
     "skipLibCheck": true,
     "esModuleInterop": true,
     "allowSyntheticDefaultImports": true,
     "downlevelIteration": true,
-    "typeRoots": ["./node_modules/@types", "./types"]
+    "typeRoots": ["./node_modules/@types"],
+    "noImplicitAny": true,
+    "resolveJsonModule": true
   },
   "include": ["src/**/*"],
   "exclude": ["node_modules", "dist"]
diff --git a/typedoc.json b/typedoc.json
index a50b6cee..bb655428 100644
--- a/typedoc.json
+++ b/typedoc.json
@@ -4,6 +4,5 @@
   "out": "docs/html",
   "readme": "README.md",
   "name": "HED JavaScript Library",
-  "cleanOutputDir": true,
-  "exclude": ["**/*test.ts"]
+  "cleanOutputDir": true
 }
diff --git a/types/README.md b/types/README.md
deleted file mode 100644
index c4064c52..00000000
--- a/types/README.md
+++ /dev/null
@@ -1,5 +0,0 @@
-## Experimental types
-
-This directory contains a typescript-friendly specification of the external API including
-specifications of the properties of objects returned by the API that are not in the public
-interface. This specification is experimental and may change in future releases.
diff --git a/types/index.d.ts b/types/index.d.ts
deleted file mode 100644
index 6fc93e2b..00000000
--- a/types/index.d.ts
+++ /dev/null
@@ -1,672 +0,0 @@
-// Type definitions for hed-validator
-// Project: https://github.com/hed-standard/hed-javascript
-// Definitions by: GitHub Copilot
-
-// BIDS exports
-export class BidsDataset {
-  /** Map of BIDS sidecar files that contain HED annotations */
-  sidecarMap: Map<string, BidsSidecar>
-
-  /** The HED schemas used to validate this dataset */
-  hedSchemas: Schemas | null
-
-  /** Factory method to create a BidsDataset */
-  static create(
-    rootOrFiles: string | object,
-    fileAccessorClass: typeof BidsFileAccessor,
-  ): Promise<[BidsDataset | null, BidsHedIssue[]]>
-
-  /** Load and set the HED schemas for this dataset */
-  setHedSchemas(): Promise<BidsHedIssue[]>
-
-  /** Find and parse all JSON sidecar files in the dataset */
-  setSidecars(): Promise<BidsHedIssue[]>
-
-  /** Validate the dataset and return any issues */
-  validate(): Promise<BidsHedIssue[]>
-}
-
-export class BidsJsonFile {
-  /** The name of this file */
-  name: string
-  /** The Object representing this file data */
-  file: object | null
-  /** This file's JSON data */
-  jsonData: Record<string, any>
-
-  /** Constructor for a BIDS JSON file */
-  constructor(name: string, file: object | null, jsonData: Record<string, any>)
-
-  /** Validate this file against HED schemas */
-  validate(schemas: Schemas | undefined): BidsHedIssue[]
-
-  /** Whether this file has any HED data */
-  get hasHedData(): boolean
-
-  /** The validator class used to validate this file */
-  get validatorClass(): any
-}
-
-export class BidsSidecar extends BidsJsonFile {
-  /** The extracted keys for this sidecar */
-  sidecarKeys: Map<string, any>
-  /** The extracted HED data for this sidecar */
-  hedData: Map<string, any>
-  /** The parsed HED data for this sidecar */
-  parsedHedData: Map<string, any>
-  /** The mapping of column splice references */
-  columnSpliceMapping: Map<string, Set<string>>
-  /** The set of column splice references */
-  columnSpliceReferences: Set<string>
-  /** The object that manages definitions */
-  definitions: DefinitionManager
-
-  /** Constructor for BidsSidecar */
-  constructor(
-    name: string,
-    file: object | null,
-    sidecarData?: Record<string, any>,
-    defManager?: DefinitionManager | null,
-  )
-
-  /** Whether this file has any HED data */
-  get hasHedData(): boolean
-
-  /** Parse this sidecar's HED strings within the sidecar structure */
-  parseSidecarKeys(hedSchemas: Schemas, fullValidation?: boolean): [Issue[], Issue[]]
-
-  /** Validate this file against HED schemas */
-  validate(schemas: Schemas | undefined): BidsHedIssue[]
-
-  /** The validator class used to validate this file */
-  get validatorClass(): any
-}
-
-export class BidsTsvFile {
-  /** The name of this file */
-  name: string
-  /** The Object representing this file data */
-  file: object | null
-  /** This file's parsed TSV data */
-  parsedTsv: Map<string, string[]>
-  /** HED strings in the "HED" column of the TSV data */
-  hedColumnHedStrings: string[]
-  /** The pseudo-sidecar object representing the merged sidecar data */
-  mergedSidecar: BidsSidecar
-
-  /** Constructor for BidsTsvFile */
-  constructor(
-    name: string,
-    file: object | null,
-    tsvData: string | Map<string, string[]> | Record<string, any>,
-    mergedDictionary?: Record<string, any>,
-    defManager?: DefinitionManager | null,
-  )
-
-  /** Determine whether this file has any HED data */
-  get hasHedData(): boolean
-
-  /** Whether this TSV file is a timeline file */
-  get isTimelineFile(): boolean
-
-  /** Validate this file against HED schemas */
-  validate(schemas: Schemas | undefined): BidsHedIssue[]
-
-  /** The validator class used to validate this file */
-  get validatorClass(): any
-}
-
-export class BidsHedIssue {
-  /** The file object associated with this issue */
-  file: object
-  /** The underlying HED issue object */
-  hedIssue: Issue
-  /** The BIDS-compliant issue code */
-  code: string
-  /** The HED-specific issue code. */
-  subCode: string
-  /** The severity of the issue (e.g., 'error' or 'warning') */
-  severity: 'error' | 'warning'
-  /** The human-readable issue message */
-  issueMessage: string
-  /** The line number where the issue occurred */
-  line: number | undefined
-  /** The path to the file where the issue occurred */
-  location: string | undefined
-
-  constructor(hedIssue: Issue, file: object | null)
-
-  /**
-   * Converts one or more HED issues into BIDS-compatible issues.
-   */
-  static fromHedIssues(
-    hedIssues: Error | Issue[],
-    file: object | null,
-    extraParameters?: Record<string, any>,
-  ): BidsHedIssue[]
-}
-
-export class BidsFileAccessor {
-  /** Map of relative file paths to file representations */
-  fileMap: Map<string, object>
-
-  /** Organized paths */
-  organizedPaths: Map<string, Map<string, string[]>>
-
-  /** Constructor for BidsDirectoryAccessor */
-  constructor(datasetRootDirectory: string, fileMap: Map<string, string>)
-
-  /** Factory method to create a BidsFileAccessor */
-  static create(rootOrFiles: string | object): Promise<BidsFileAccessor>
-
-  /** Get file content */
-  getFileContent(filePath: string): Promise<string | null>
-}
-
-export class BidsDirectoryAccessor {
-  /** Map of relative file paths to file representations */
-  fileMap: Map<string, object>
-
-  /** Organized paths */
-  organizedPaths: Map<string, Map<string, string[]>>
-
-  /** Constructor for BidsDirectoryAccessor */
-  constructor(datasetRootDirectory: string, fileMap: Map<string, string>)
-
-  /** Factory method to create a BidsDirectoryAccessor */
-  static create(datasetRootDirectory: string): Promise<BidsDirectoryAccessor>
-
-  /** Get file content from the filesystem */
-  getFileContent(relativePath: string): Promise<string | null>
-}
-
-export function buildBidsSchemas(datasetDescription: BidsJsonFile): Promise<Schemas | null>
-
-// Issues exports
-export class IssueError extends Error {
-  /** The associated HED issue */
-  issue: Issue
-
-  protected constructor(issue: Issue, ...params: any[])
-
-  /** Generate a new Issue and immediately throw it as an IssueError */
-  static generateAndThrow(internalCode: string, parameters?: Record<string, string | number[]>): never
-
-  /** Generate and throw an internal error */
-  static generateAndThrowInternalError(message?: string): never
-}
-
-export class Issue {
-  /** The internal error code */
-  internalCode: string
-  /** The HED 3 error code */
-  hedCode: string
-  /** Issue severity level */
-  level: 'error' | 'warning'
-  /** The detailed error message */
-  message: string
-  /** Additional parameters */
-  parameters: Record<string, any>
-
-  constructor(internalCode: string, hedCode: string, level: 'error' | 'warning', parameters?: Record<string, any>)
-
-  /** Override of Object.prototype.toString */
-  toString(): string
-
-  /** (Re-)generate the issue message */
-  generateMessage(): void
-}
-
-/**
- * Generate a new issue object.
- *
- * @param internalCode The internal error code.
- * @param parameters The error string parameters.
- * @returns An object representing the issue.
- */
-export function generateIssue(internalCode: string, parameters?: Record<string, any>): Issue
-
-/**
- * Update the parameters of a list of issues.
- *
- * @param issues The list of issues (different types can be intermixed).
- * @param parameters The parameters to add.
- */
-export function updateIssueParameters(issues: (IssueError | Issue)[], parameters: Record<string, string>): void
-
-// Parser exports
-export class Definition {
-  /** The name of the definition */
-  name: string
-  /** The parsed HED tag representing the definition */
-  defTag: ParsedHedTag
-  /** The parsed HED group representing the definition */
-  defGroup: ParsedHedGroup
-  /** Placeholder information */
-  placeholder: string
-
-  /** Evaluate the definition and return contents with any issues */
-  evaluateDefinition(
-    tag: ParsedHedTag,
-    hedSchema: Schemas,
-    placeholderAllowed: boolean,
-  ): [string | null, Issue[], Issue[]]
-
-  /** Check if this definition is equivalent to another */
-  equivalent(other: Definition): boolean
-
-  /** Create a definition from a HED string */
-  static createDefinition(hedString: string, hedSchemas: Schemas): [Definition | null, Issue[], Issue[]]
-
-  /** Factory method to create a Definition from a group */
-  static createDefinitionFromGroup(definitionGroup: ParsedHedGroup): [Definition | null, Issue[], Issue[]]
-}
-
-export class DefinitionManager {
-  /** Map of definitions */
-  definitions: Map<string, Definition>
-
-  constructor()
-
-  /** Add a list of definitions to this manager */
-  addDefinitions(defs: Definition[]): Issue[]
-
-  /** Add a single definition to this manager */
-  addDefinition(definition: Definition): Issue[]
-
-  /** Check Def tags in a HED string for missing or incorrectly used definitions */
-  validateDefs(hedString: ParsedHedString, hedSchemas: Schemas, placeholderAllowed: boolean): Issue[]
-
-  /** Check Def-expand tags in a HED string for missing or incorrectly used definitions */
-  validateDefExpands(hedString: ParsedHedString, hedSchemas: Schemas, placeholderAllowed: boolean): Issue[]
-}
-
-// Parsed HED types (used by Definition)
-export interface TagSpec {
-  /** The tag this spec represents */
-  tag: string
-  /** The schema prefix for this tag, if any */
-  library: string
-  /** Start position in the original string */
-  start: number
-  /** End position in the original string */
-  end: number
-}
-
-export interface ParsedHedSubstring {
-  /** The original pre-parsed version of the HED tag */
-  originalTag: string
-  /** The bounds of the HED tag in the original HED string */
-  originalBounds: number[]
-  /** The normalized version of the object */
-  normalized: string
-
-  /** Format this substring nicely */
-  format(long?: boolean): string
-  /** Override of Object.prototype.toString */
-  toString(): string
-}
-
-export interface ParsedHedColumnSplice extends ParsedHedSubstring {
-  /** The original pre-parsed version of the column splice (from ParsedHedSubstring) */
-  originalTag: string
-  /** The normalized version of the column splice */
-  normalized: string
-
-  /** Format this column splice template nicely */
-  format(long?: boolean): string
-  /** Override of Object.prototype.toString */
-  toString(): string
-  /** Determine if this column splice is equivalent to another */
-  equivalent(other: ParsedHedColumnSplice): boolean
-}
-
-export class ParsedHedTag {
-  /** The original pre-parsed version of the HED tag (from ParsedHedSubstring) */
-  originalTag: string
-  /** The bounds of the HED tag in the original HED string (from ParsedHedSubstring) */
-  originalBounds: number[]
-  /** The formatted canonical version of the HED tag */
-  formattedTag: string
-  /** The canonical form of the HED tag */
-  canonicalTag: string
-  /** The HED schema this tag belongs to */
-  schema: Schema
-  /** The schema's representation of this tag */
-  schemaTag: SchemaTag
-  /** The tag value */
-  _value: string
-  /** Split value for two-level tags */
-  _splitValue?: string
-  /** The normalized tag */
-  normalized: string
-  /** The remaining part of the tag after the portion actually in the schema */
-  _remainder: string
-  /** The units if any */
-  _units: string
-
-  /** Constructor for ParsedHedTag */
-  constructor(tagSpec: TagSpec, hedSchemas: Schemas, hedString: string)
-
-  /** Format this tag nicely */
-  format(long?: boolean): string
-  /** Override of Object.prototype.toString */
-  toString(): string
-
-  /** Check if this tag has a specific attribute */
-  hasAttribute(attribute: string): boolean
-
-  /** Check if this tag is equivalent to another */
-  equivalent(other: ParsedHedTag): boolean
-}
-
-export class ParsedHedGroup {
-  /** The original pre-parsed version of the HED group (from ParsedHedSubstring) */
-  originalTag: string
-  /** The bounds of the HED group in the original HED string (from ParsedHedSubstring) */
-  originalBounds: number[]
-  /** The normalized group string */
-  normalized: string
-  /** The parsed HED tags, groups, or splices in the HED tag group at the top level */
-  tags: (ParsedHedTag | ParsedHedGroup | ParsedHedColumnSplice)[]
-  /** The top-level parsed HED tags in this string */
-  topTags: ParsedHedTag[]
-  /** The top-level parsed HED groups in this string */
-  topGroups: ParsedHedGroup[]
-  /** All the parsed HED tags in this string */
-  allTags: ParsedHedTag[]
-  /** Reserved HED group tags. This only covers top group tags in the group */
-  reservedTags: Map<string, ParsedHedTag[]>
-  /** The top-level child subgroups containing Def-expand tags */
-  defExpandChildren: ParsedHedGroup[]
-  /** The top-level Def tags */
-  defTags: ParsedHedTag[]
-  /** The top-level Def-expand tags */
-  defExpandTags: ParsedHedTag[]
-  /** The total number of top-level Def tags and top-level Def-expand groups */
-  defCount: number
-  /** The unique top-level tag requiring a Def or Def-expand group, if any */
-  requiresDefTag: ParsedHedTag[] | null
-
-  /** Constructor for ParsedHedGroup */
-  constructor(parsedHedTags: any[], hedString: string, originalBounds: number[])
-
-  /** Format this group nicely */
-  format(long?: boolean): string
-  /** Override of Object.prototype.toString */
-  toString(): string
-  /** Check if this group is equivalent to another */
-  equivalent(other: ParsedHedGroup): boolean
-  /** Generator that yields subgroups containing a specific tag name */
-  subParsedGroupIterator(tagName: string): Generator<ParsedHedGroup>
-  /** Generator that yields all column splices in this group and subgroups */
-  columnSpliceIterator(): Generator<ParsedHedColumnSplice>
-}
-
-export class ParsedHedString {
-  /** The original HED string */
-  hedString: string
-  /** The tag groups in the string (top-level) */
-  tagGroups: ParsedHedGroup[]
-  /** All the top-level tags in the string */
-  topLevelTags: ParsedHedTag[]
-  /** All the tags in the string at all levels */
-  tags: ParsedHedTag[]
-  /** All the column splices in the string at all levels */
-  columnSplices: ParsedHedColumnSplice[]
-  /** The tags in the top-level tag groups in the string, split into arrays */
-  topLevelGroupTags: ParsedHedTag[]
-  /** The top-level definition tag groups in the string */
-  definitions: ParsedHedGroup[]
-  /** The normalized string */
-  normalized: string
-
-  /** Constructor for ParsedHedString */
-  constructor(hedString: string, parsedTags: (ParsedHedTag | ParsedHedGroup | ParsedHedColumnSplice)[])
-
-  /** Format this HED string nicely */
-  format(long?: boolean): string
-  /** Override of Object.prototype.toString */
-  toString(): string
-}
-
-// Schema types
-export class Schema {
-  /** The HED schema version */
-  version: string
-  /** The HED library schema name */
-  library: string
-  /** This schema's prefix in the active schema set */
-  prefix: string
-  /** The collection of schema entries */
-  entries: SchemaEntries
-  /** The standard HED schema version this schema is linked to */
-  withStandard: string
-
-  constructor(xmlData: object, entries: SchemaEntries)
-}
-
-export class SchemaEntries {
-  /** The schema's properties */
-  properties: SchemaEntryManager<SchemaProperty>
-  /** The schema's attributes */
-  attributes: SchemaEntryManager<SchemaAttribute>
-  /** The schema's value classes */
-  valueClasses: SchemaEntryManager<SchemaValueClass>
-  /** The schema's unit classes */
-  unitClasses: SchemaEntryManager<SchemaUnitClass>
-  /** The schema's unit modifiers */
-  unitModifiers: SchemaEntryManager<SchemaUnitModifier>
-  /** The schema's tags */
-  tags: SchemaEntryManager<SchemaTag>
-
-  constructor(schemaParser: object)
-}
-
-export class SchemaEntryManager<T extends SchemaEntry> {
-  /** The definitions managed by this entry manager */
-  protected _definitions: Map<string, T>
-
-  constructor(definitions: Map<string, T>)
-
-  [Symbol.iterator](): IterableIterator<[string, T]>
-  keys(): IterableIterator<string>
-  values(): IterableIterator<T>
-  hasEntry(name: string): boolean
-  getEntry(name: string): T
-  getEntriesWithBooleanAttribute(booleanAttributeName: string): Map<string, T>
-  filter(fn: (entry: [string, T]) => boolean): Map<string, T>
-  get length(): number
-}
-
-export class SchemaEntry {
-  /** The name of this schema entry */
-  name: string
-
-  constructor(name: string)
-
-  hasBooleanAttribute(attributeName: string): boolean
-}
-
-export class SchemaProperty extends SchemaEntry {
-  /** The type of the property */
-  protected _propertyType: string
-
-  constructor(name: string, propertyType: string)
-
-  /** Whether this property describes a schema category */
-  get isCategoryProperty(): boolean
-  /** Whether this property describes a data type */
-  get isTypeProperty(): boolean
-  /** Whether this property describes a role */
-  get isRoleProperty(): boolean
-}
-
-export class SchemaAttribute extends SchemaEntry {
-  /** The categories of elements this schema attribute applies to */
-  protected _categoryProperties: Set<SchemaProperty>
-  /** The data type of this schema attribute */
-  protected _typeProperty: SchemaProperty
-  /** The set of role properties for this schema attribute */
-  protected _roleProperties: Set<SchemaProperty>
-
-  constructor(name: string, properties: SchemaProperty[])
-
-  /** The categories of elements this schema attribute applies to */
-  get categoryProperty(): Set<SchemaProperty> | SchemaProperty | undefined
-  /** The data type property of this schema attribute */
-  get typeProperty(): SchemaProperty
-  /** The set of role properties for this schema attribute */
-  get roleProperties(): Set<SchemaProperty>
-}
-
-export class SchemaEntryWithAttributes extends SchemaEntry {
-  /** The set of boolean attributes this schema entry has */
-  booleanAttributes: Set<SchemaAttribute>
-  /** The collection of value attributes this schema entry has */
-  valueAttributes: Map<SchemaAttribute, any>
-  /** The set of boolean attribute names this schema entry has */
-  booleanAttributeNames: Set<string>
-  /** The collection of value attribute names this schema entry has */
-  valueAttributeNames: Map<string, any>
-
-  constructor(name: string, booleanAttributes: Set<SchemaAttribute>, valueAttributes: Map<SchemaAttribute, any>)
-
-  hasAttribute(attributeName: string): boolean
-  hasBooleanAttribute(attributeName: string): boolean
-  getValue(attributeName: string): any
-}
-
-export class SchemaUnit extends SchemaEntryWithAttributes {
-  /** The type of this unit */
-  unitType: SchemaUnitClass
-  /** The SI unit this unit is based on */
-  siUnit: string
-  /** The default SI unit for this unit's type */
-  defaultSiUnit: string
-  /** The unit symbol */
-  unitSymbol: string
-
-  constructor(
-    name: string,
-    booleanAttributes: Set<SchemaAttribute>,
-    valueAttributes: Map<SchemaAttribute, any>,
-    unitType: SchemaUnitClass,
-  )
-}
-
-export class SchemaUnitClass extends SchemaEntryWithAttributes {
-  /** The units in this class */
-  units: SchemaUnit[]
-
-  constructor(
-    name: string,
-    booleanAttributes: Set<SchemaAttribute>,
-    valueAttributes: Map<SchemaAttribute, any>,
-    units: SchemaUnit[],
-  )
-}
-
-export class SchemaUnitModifier extends SchemaEntryWithAttributes {
-  /** The SI prefix for this unit modifier */
-  siPrefix: string
-  /** The factor this unit modifier represents */
-  factor: number
-
-  constructor(
-    name: string,
-    booleanAttributes: Set<SchemaAttribute>,
-    valueAttributes: Map<SchemaAttribute, any>,
-    siPrefix: string,
-    factor: number,
-  )
-}
-
-export class SchemaValueClass extends SchemaEntryWithAttributes {}
-
-export class SchemaTag extends SchemaEntryWithAttributes {
-  /** The parent tag of this tag */
-  parent: SchemaTag
-
-  constructor(
-    name: string,
-    booleanAttributes: Set<SchemaAttribute>,
-    valueAttributes: Map<SchemaAttribute, any>,
-    parent: SchemaTag,
-  )
-
-  get shortTagName(): string
-  get longTagName(): string
-  isUnitClass(): boolean
-  isTakesValueClass(): boolean
-  parentHasAttribute(attributeName: string): boolean
-}
-
-export class Schemas {
-  /** The imported HED schemas */
-  schemas: Map<string, Schema>
-
-  constructor(schemas: Schema | Map<string, Schema>)
-
-  /** Get schema by name */
-  getSchema(name?: string): Schema
-
-  /** The base schema, i.e. the schema with no prefix, if one is defined. */
-  get baseSchema(): Schema
-}
-
-// Schema exports
-export function getLocalSchemaVersions(): string[]
-
-export function buildSchemasFromVersion(version: string): Promise<Schemas>
-
-// Parser exports
-/**
- * Parse a HED string.
- *
- * @param hedString A (possibly already parsed) HED string.
- * @param hedSchemas The collection of HED schemas.
- * @param definitionsAllowed True if definitions are allowed.
- * @param placeholdersAllowed True if placeholders are allowed.
- * @param fullValidation True if full validation is required.
- * @returns The parsed HED string and any issues found.
- */
-export function parseHedString(
-  hedString: string | ParsedHedString,
-  hedSchemas: Schemas,
-  definitionsAllowed: boolean,
-  placeholdersAllowed: boolean,
-  fullValidation: boolean,
-): [ParsedHedString, Issue[], Issue[]]
-
-/**
- * Parse a HED string in a standalone context.
- *
- * @param hedString A (possibly already parsed) HED string.
- * @param hedSchemas The collection of HED schemas.
- * @param defManager The definition manager to use for parsing definitions.
- * @returns The parsed HED string and any issues found.
- */
-export function parseStandaloneString(
-  hedString: string | ParsedHedString,
-  hedSchemas: Schemas,
-  defManager?: DefinitionManager | null,
-): [ParsedHedString, Issue[], Issue[]]
-
-/**
- * Parse a list of HED strings.
- *
- * @param hedStrings A list of HED strings.
- * @param hedSchemas The collection of HED schemas.
- * @param definitionsAllowed True if definitions are allowed
- * @param placeholdersAllowed True if placeholders are allowed
- * @param fullValidation True if full validation is required.
- * @returns The parsed HED strings and any issues found.
- */
-export function parseHedStrings(
-  hedStrings: (string | ParsedHedString)[],
-  hedSchemas: Schemas,
-  definitionsAllowed: boolean,
-  placeholdersAllowed: boolean,
-  fullValidation: boolean,
-): [ParsedHedString[], Issue[], Issue[]]
diff --git a/types/test.ts b/types/test.ts
deleted file mode 100644
index 1c450c74..00000000
--- a/types/test.ts
+++ /dev/null
@@ -1,389 +0,0 @@
-import {
-  // BIDS
-  BidsDataset,
-  BidsJsonFile,
-  BidsSidecar,
-  BidsTsvFile,
-  BidsHedIssue,
-  BidsFileAccessor,
-  BidsDirectoryAccessor,
-  buildBidsSchemas,
-
-  // Issues
-  IssueError,
-  Issue,
-
-  // Parser
-  Definition,
-  DefinitionManager,
-
-  // Parsed HED types
-  ParsedHedTag,
-  ParsedHedGroup,
-  ParsedHedString,
-  TagSpec,
-  ParsedHedColumnSplice,
-
-  // Schema
-  Schema,
-  SchemaEntries,
-  SchemaEntryManager,
-  SchemaEntry,
-  SchemaProperty,
-  SchemaAttribute,
-  SchemaEntryWithAttributes,
-  SchemaUnit,
-  SchemaUnitClass,
-  SchemaUnitModifier,
-  SchemaValueClass,
-  SchemaTag,
-  Schemas,
-
-  // Parser functions
-  parseStandaloneString,
-  parseHedString,
-  parseHedStrings,
-
-  // Schema functions
-  getLocalSchemaVersions,
-  buildSchemasFromVersion,
-  generateIssue,
-} from 'hed-validator'
-
-// This is a type-only test file.
-// It is not intended to be run, but to be type-checked.
-// This is why many functions are async and not awaited.
-
-// Mock data and objects
-const fakePath = '/fake/path'
-const fakeFile: object = { name: 'fake.json', path: fakePath }
-const fakeHedString = 'Event'
-
-async function testBids(schemas: Schemas) {
-  // BidsDataset
-  const [dataset, bidsIssues] = await BidsDataset.create(fakePath, BidsDirectoryAccessor)
-  if (dataset) {
-    dataset.setHedSchemas()
-    dataset.setSidecars()
-    dataset.validate()
-    const sidecar: BidsSidecar | undefined = dataset.sidecarMap.get('sidecar.json')
-    if (sidecar) {
-      console.log(sidecar.hasHedData)
-    }
-  }
-  console.log(bidsIssues)
-
-  // BidsJsonFile
-  const bidsJsonFile = new BidsJsonFile('test.json', fakeFile, {})
-  console.log(bidsJsonFile.name, bidsJsonFile.file, bidsJsonFile.jsonData, bidsJsonFile.hasHedData)
-  bidsJsonFile.validate(schemas)
-
-  // BidsSidecar
-  const defManager = new DefinitionManager()
-  const bidsSidecar = new BidsSidecar('sidecar.json', fakeFile, {}, defManager)
-  console.log(
-    bidsSidecar.sidecarKeys,
-    bidsSidecar.hedData,
-    bidsSidecar.parsedHedData,
-    bidsSidecar.columnSpliceMapping,
-    bidsSidecar.columnSpliceReferences,
-    bidsSidecar.definitions,
-    bidsSidecar.hasHedData,
-  )
-  bidsSidecar.parseSidecarKeys(schemas, true)
-  bidsSidecar.validate(schemas)
-
-  // BidsTsvFile
-  const bidsTsvFile = new BidsTsvFile('events.tsv', fakeFile, 'data', {}, defManager)
-  console.log(
-    bidsTsvFile.name,
-    bidsTsvFile.file,
-    bidsTsvFile.parsedTsv,
-    bidsTsvFile.hedColumnHedStrings,
-    bidsTsvFile.mergedSidecar,
-    bidsTsvFile.hasHedData,
-    bidsTsvFile.isTimelineFile,
-  )
-  bidsTsvFile.validate(schemas)
-
-  // BidsHedIssue
-  const issue = generateIssue('genericError', { hedCode: 'code' })
-  const bidsHedIssue = new BidsHedIssue(issue, fakeFile)
-  console.log(
-    bidsHedIssue.file,
-    bidsHedIssue.hedIssue,
-    bidsHedIssue.code,
-    bidsHedIssue.subCode,
-    bidsHedIssue.severity,
-    bidsHedIssue.issueMessage,
-    bidsHedIssue.line,
-    bidsHedIssue.location,
-  )
-
-  // BidsFileAccessor
-  const fileAccessor = await BidsFileAccessor.create(fakePath)
-  console.log(fileAccessor.fileMap, fileAccessor.organizedPaths)
-  fileAccessor.getFileContent('file.txt')
-
-  // BidsDirectoryAccessor
-  const directoryAccessor = await BidsDirectoryAccessor.create(fakePath)
-  console.log(directoryAccessor.fileMap, directoryAccessor.organizedPaths)
-  directoryAccessor.getFileContent('file.txt')
-
-  // buildBidsSchemas
-  await buildBidsSchemas(bidsJsonFile)
-}
-
-function testIssues() {
-  // Issue
-  const issue = generateIssue('genericError', { a: 1 })
-  console.log(issue.internalCode, issue.hedCode, issue.level, issue.message, issue.parameters)
-  issue.generateMessage()
-  console.log(issue.toString())
-
-  // IssueError
-  try {
-    IssueError.generateAndThrow('internalCode', { param: [1, 2] })
-  } catch (e: unknown) {
-    if (e instanceof IssueError) {
-      console.log((e as IssueError).issue)
-    }
-  }
-  try {
-    IssueError.generateAndThrowInternalError('internal error message')
-  } catch (e: unknown) {
-    if (e instanceof IssueError) {
-      console.log((e as IssueError).issue)
-    }
-  }
-}
-
-function testParser(
-  schemas: Schemas,
-  parsedString: ParsedHedString,
-  parsedTag: ParsedHedTag,
-  parsedGroup: ParsedHedGroup,
-) {
-  // Definition
-  const [definition, defIssues, defIssues2] = Definition.createDefinition(fakeHedString, schemas)
-  if (definition) {
-    console.log(definition.name, definition.defTag, definition.defGroup, definition.placeholder)
-    definition.evaluateDefinition(parsedTag, schemas, true)
-    const [definitionFromGroup, defGroupIssues, defGroupIssues2] = Definition.createDefinitionFromGroup(parsedGroup)
-    if (definitionFromGroup) {
-      definition.equivalent(definitionFromGroup)
-    }
-    console.log(defGroupIssues, defGroupIssues2)
-  }
-  console.log(defIssues, defIssues2)
-
-  // DefinitionManager
-  const defManager = new DefinitionManager()
-  if (definition) {
-    defManager.addDefinition(definition)
-    defManager.addDefinitions([definition])
-  }
-  defManager.validateDefs(parsedString, schemas, true)
-  defManager.validateDefExpands(parsedString, schemas, true)
-
-  // ParsedHedTag
-  const tagSpec: TagSpec = { tag: 'tag', library: 'lib', start: 0, end: 3 }
-  const parsedHedTag = new ParsedHedTag(tagSpec, schemas, fakeHedString)
-  const schema: Schema = parsedHedTag.schema
-  const schemaTag: SchemaTag = parsedHedTag.schemaTag
-  console.log(
-    parsedHedTag.originalTag,
-    parsedHedTag.originalBounds,
-    parsedHedTag.formattedTag,
-    parsedHedTag.canonicalTag,
-    schema,
-    schemaTag,
-  )
-  parsedHedTag.format(true)
-  parsedHedTag.toString()
-  parsedHedTag.hasAttribute('attribute')
-  parsedHedTag.equivalent(parsedTag)
-
-  // ParsedHedGroup
-  const parsedHedGroup = new ParsedHedGroup([parsedTag, parsedGroup], fakeHedString, [0, 1])
-  const tags: (ParsedHedTag | ParsedHedGroup | ParsedHedColumnSplice)[] = parsedHedGroup.tags
-  console.log(
-    parsedHedGroup.originalTag,
-    parsedHedGroup.originalBounds,
-    tags,
-    parsedHedGroup.topTags,
-    parsedHedGroup.topGroups,
-    parsedHedGroup.allTags,
-    parsedHedGroup.defExpandChildren,
-    parsedHedGroup.defTags,
-    parsedHedGroup.defExpandTags,
-    parsedHedGroup.defCount,
-    parsedHedGroup.requiresDefTag,
-  )
-  parsedHedGroup.format(true)
-  parsedHedGroup.toString()
-  parsedHedGroup.equivalent(parsedGroup)
-  const subGroupIterator = parsedHedGroup.subParsedGroupIterator('tag')
-  console.log(subGroupIterator.next().value)
-  const spliceIterator = parsedHedGroup.columnSpliceIterator()
-  const splice: ParsedHedColumnSplice = spliceIterator.next().value
-  console.log(splice)
-
-  // ParsedHedString
-  const parsedHedString = new ParsedHedString(fakeHedString, [parsedTag, parsedGroup, splice])
-  console.log(
-    parsedHedString.hedString,
-    parsedHedString.tagGroups,
-    parsedHedString.topLevelTags,
-    parsedHedString.tags,
-    parsedHedString.columnSplices,
-    parsedHedString.topLevelGroupTags,
-    parsedHedString.definitions,
-    parsedHedString.normalized,
-  )
-  parsedHedString.format(true)
-  parsedHedString.toString()
-}
-
-function testSchemaTypes(schemas: Schemas) {
-  // Schema
-  const schema: Schema = schemas.getSchema('')
-  if (!schema) {
-    return
-  }
-  console.log(schema.version, schema.library, schema.prefix, schema.entries, schema.withStandard)
-
-  // SchemaEntries
-  const entries: SchemaEntries = schema.entries
-  console.log(
-    entries.properties,
-    entries.attributes,
-    entries.valueClasses,
-    entries.unitClasses,
-    entries.unitModifiers,
-    entries.tags,
-  )
-
-  // SchemaEntryManager
-  const manager: SchemaEntryManager<SchemaTag> = entries.tags
-  for (const [key, value] of manager) {
-    console.log(key, value)
-  }
-  console.log(manager.keys().next().value)
-  console.log(manager.values().next().value)
-  console.log(manager.hasEntry('entry'))
-  console.log(manager.getEntry('entry'))
-  console.log(manager.getEntriesWithBooleanAttribute('attribute'))
-  console.log(manager.filter(([, v]) => v.hasBooleanAttribute('attribute')))
-  console.log(manager.length)
-
-  // SchemaEntry
-  const entry: SchemaEntry = manager.getEntry('entry')
-  if (entry) {
-    console.log(entry.name)
-    entry.hasBooleanAttribute('attribute')
-  }
-
-  // SchemaProperty
-  const property: SchemaProperty = entries.properties.values().next().value
-  if (property) {
-    console.log(property.isCategoryProperty, property.isTypeProperty, property.isRoleProperty)
-  }
-
-  // SchemaAttribute
-  const attribute: SchemaAttribute = entries.attributes.values().next().value
-  if (attribute) {
-    console.log(attribute.categoryProperty, attribute.typeProperty, attribute.roleProperties)
-  }
-
-  // SchemaEntryWithAttributes
-  const entryWithAttrs: SchemaEntryWithAttributes = entries.tags.values().next().value
-  if (entryWithAttrs) {
-    console.log(
-      entryWithAttrs.booleanAttributes,
-      entryWithAttrs.valueAttributes,
-      entryWithAttrs.booleanAttributeNames,
-      entryWithAttrs.valueAttributeNames,
-    )
-    entryWithAttrs.hasAttribute('attribute')
-    entryWithAttrs.hasBooleanAttribute('attribute')
-    entryWithAttrs.getValue('attribute')
-  }
-
-  // SchemaUnit
-  const unitClass: SchemaUnitClass = entries.unitClasses.values().next().value
-  if (unitClass) {
-    const unit: SchemaUnit = unitClass.units[0]
-    if (unit) {
-      console.log(unit.unitType, unit.siUnit, unit.defaultSiUnit, unit.unitSymbol)
-    }
-  }
-
-  // SchemaUnitClass
-  if (unitClass) {
-    console.log(unitClass.units)
-  }
-
-  // SchemaUnitModifier
-  const unitModifier: SchemaUnitModifier = entries.unitModifiers.values().next().value
-  if (unitModifier) {
-    console.log(unitModifier.siPrefix, unitModifier.factor)
-  }
-
-  // SchemaValueClass
-  const valueClass: SchemaValueClass = entries.valueClasses.values().next().value
-  console.log(valueClass.name)
-
-  // SchemaTag
-  const tag: SchemaTag = entries.tags.values().next().value
-  if (tag) {
-    console.log(tag.parent, tag.shortTagName, tag.longTagName)
-    tag.isUnitClass()
-    tag.isTakesValueClass()
-    tag.parentHasAttribute('attribute')
-  }
-}
-
-async function testSchemaFunctions() {
-  // getLocalSchemaVersions
-  const versions = getLocalSchemaVersions()
-  console.log(versions)
-
-  // buildSchemasFromVersion
-  if (versions.length > 0) {
-    const schemas = await buildSchemasFromVersion(versions[0])
-    if (schemas) {
-      // Schemas
-      console.log(schemas.schemas, schemas.baseSchema)
-      schemas.getSchema('')
-
-      // parseStandaloneString
-      const [parsedString, issues, issues5] = parseStandaloneString(fakeHedString, schemas)
-      console.log(parsedString, issues, issues5)
-
-      // parseHedString
-      const [parsedHedString, issues2, issues3] = parseHedString(fakeHedString, schemas, true, true, true)
-      console.log(parsedHedString, issues2, issues3)
-
-      // parseHedStrings
-      const [parsedHedStrings, issues4, issues6] = parseHedStrings([fakeHedString], schemas, true, true, true)
-      console.log(parsedHedStrings, issues4, issues6)
-
-      // Run other tests that require schemas
-      await testBids(schemas)
-      if (parsedHedString && parsedHedString.tags.length > 0 && parsedHedString.tagGroups.length > 0) {
-        const parsedTag = parsedHedString.tags[0] as ParsedHedTag
-        const parsedGroup = parsedHedString.tagGroups[0]
-        testParser(schemas, parsedHedString, parsedTag, parsedGroup)
-      }
-      testSchemaTypes(schemas)
-    }
-  }
-}
-
-async function main() {
-  testIssues()
-  await testSchemaFunctions()
-}
-
-main().catch(console.error)
diff --git a/types/tsconfig.json b/types/tsconfig.json
deleted file mode 100644
index 7cafc647..00000000
--- a/types/tsconfig.json
+++ /dev/null
@@ -1,11 +0,0 @@
-{
-  "extends": "../tsconfig.json",
-  "compilerOptions": {
-    "baseUrl": "..",
-    "paths": {
-      "hed-validator": ["./types/index.d.ts"]
-    },
-    "downlevelIteration": true
-  },
-  "include": ["./test.ts"]
-}
diff --git a/xml-transformer.js b/xml-transformer.cjs
similarity index 100%
rename from xml-transformer.js
rename to xml-transformer.cjs