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HPAI Workflow Step 07: Inference and Computation Choices #8

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Description

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Objective

Choose inference methods and computational approach.

Considerations

  • Likelihood formulation (FOI-based, continuous time)
  • Latent infection times (data augmentation or marginalization)
  • MCMC method (HMC/NUTS, or alternatives for discrete latents)
  • Software choice (Turing.jl, Stan, custom)

Deliverable

notes/step07_inference_computation.md

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