From 9c751a0914f5cdea315a2196fc9188020931f5b3 Mon Sep 17 00:00:00 2001
From: Khoroshevskyi <sasha99250@gmail.com>
Date: Wed, 15 Apr 2026 19:28:18 -0400
Subject: [PATCH] Updated encode id lookup

---
 bbconf/modules/bedfiles.py | 29 +++++++++++++++++++++++++++++
 docs/changelog.md          |  5 +++++
 pyproject.toml             |  2 +-
 3 files changed, 35 insertions(+), 1 deletion(-)

diff --git a/bbconf/modules/bedfiles.py b/bbconf/modules/bedfiles.py
index 0d3fc9b..c45d0be 100644
--- a/bbconf/modules/bedfiles.py
+++ b/bbconf/modules/bedfiles.py
@@ -2374,6 +2374,7 @@ def search_external_file(self, source: str, accession: str) -> BedListSearchResu
         Returns:
             List of bed file metadata.
         """
+
         if source not in ["geo", "encode"]:
             raise BedBaseConfError(
                 f"Source {source} is not supported. Supported sources are: 'geo', 'encode'."
@@ -2392,6 +2393,34 @@ def search_external_file(self, source: str, accession: str) -> BedListSearchResu
                     )
                 )
             )
+        elif source == "geo" and accession.upper().startswith("GSM"):
+            statement = (
+                select(Bed)
+                .join(BedMetadata, Bed.id == BedMetadata.id)
+                .where(
+                    BedMetadata.global_sample_id.contains(
+                        cast(
+                            [f"{source}:{accession}"],
+                            postgresql.ARRAY(postgresql.VARCHAR),
+                        )
+                    )
+                )
+            )
+        elif source == "encode" and accession.upper().startswith("ENCSR"):
+            accession = accession.upper()
+            statement = (
+                select(Bed)
+                .join(BedMetadata, Bed.id == BedMetadata.id)
+                .where(
+                    BedMetadata.global_experiment_id.contains(
+                        cast(
+                            [f"{source}:{accession}"],
+                            postgresql.ARRAY(postgresql.VARCHAR),
+                        )
+                    )
+                )
+            )
+            print(statement)
         else:
             statement = (
                 select(Bed)
diff --git a/docs/changelog.md b/docs/changelog.md
index 2a6ceb2..79cac91 100644
--- a/docs/changelog.md
+++ b/docs/changelog.md
@@ -2,6 +2,11 @@
 
 This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html) and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) format.
 
+### [0.14.11] - 2026-04-15
+### Fixed:
+- External id search
+
+
 ### [0.14.10] - 2026-04-05
 ### Fixed:
 - version info bug
diff --git a/pyproject.toml b/pyproject.toml
index 0e5a2aa..fde706c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "bbconf"
-version = "0.14.10"
+version = "0.14.11"
 description = "Configuration and data management tool for BEDbase"
 readme = "README.md"
 license = "BSD-2-Clause"