From 9932e93c30e748ac134d10178e6b354c6078468f Mon Sep 17 00:00:00 2001 From: Khoroshevskyi Date: Thu, 5 Feb 2026 13:30:45 -0500 Subject: [PATCH] Updated reindexing script --- bbconf/_version.py | 2 +- bbconf/modules/bedfiles.py | 7 +++++++ 2 files changed, 8 insertions(+), 1 deletion(-) diff --git a/bbconf/_version.py b/bbconf/_version.py index 224f1fb7..141826d5 100644 --- a/bbconf/_version.py +++ b/bbconf/_version.py @@ -1 +1 @@ -__version__ = "0.14.4" +__version__ = "0.14.5" diff --git a/bbconf/modules/bedfiles.py b/bbconf/modules/bedfiles.py index 8d2eb4fb..0326b9ec 100644 --- a/bbconf/modules/bedfiles.py +++ b/bbconf/modules/bedfiles.py @@ -1476,6 +1476,13 @@ def reindex_qdrant(self, batch: int = 100, purge: bool = False) -> None: bed_region_set_obj = GRegionSet(bb_client.seek(record.id)) except FileNotFoundError: bed_region_set_obj = bb_client.load_bed(record.id) + except RuntimeError: + bed_region_set_obj = bb_client.load_bed(record.id) + except Exception: + _LOGGER.warning( + f"File not found or corrupted. Skipping.. {record.id}" + ) + continue pbar.set_description(f"Processing file: {record.id}")