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README-dev.md

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MagnetDB

Tools for creating and manipulating a database designed for Magnet simulations. Data may be partly retreived from Lncmi control and monitoring website. See python_magnetrun for more details

Development setup

  1. Pre-requisites
  • Certificates

On your host, set /etc/hosts:

echo "127.0.0.1 magnetdb-dev.local api.magnetdb-dev.local lemon.magnetdb-dev.local manager.lemon.magnetdb-dev.local auth.lemon.magnetdb-dev.local pgadmin.magnetdb-dev.local minio.magnetdb-dev.local traefik.magnetdb-dev.local" | sudo tee -a /etc/hosts

Create a self signed certificate for the magnetdb server:

mkdir -p certs
cd certs
mkcert -CAROOT
mkcert 'magnetdb-dev.local'
mkcert '*.magnetdb-dev.local'
mkcert -install
chmod 600 certs/*.key
  • Create and Fix the permissions for pgadmin-data
sudo chown -R 5050:0 pgadmin-data
  1. Start dependencies with docker:
docker-compose -f docker-compose-dev-traefik-ssl.yml up

Note: if you see error messages about pgadmin, try to fix permissions on pgadmin-data directory by running sudo chown -R 5050:5050 pgadmin-data

  1. Configure LemonLDAP (https://github.com/LemonLDAPNG/lemonldap-ng-docker):

    1. Sign in to https://auth.lemon.magnetdb-dev.local/ with dwho/dwho
    2. Enable OpenID Connect in Administration > WebSSO Manager > General Parameters > Issuer modules > OpenID Connect
    3. Create OpenID relying party in Administration > WebSSO Manager > OpenID Connect Relying Parties > Add OpenID Relying Party
    4. Go in Administration > WebSSO Manager > OpenID Connect Relying Parties > "Name of the relying party" > Options > Basic
    5. Set Client ID to testid
    6. Set Client secret to testsecret
    7. Set Allowed redirection addresses for login to https://magnetdb-dev.local/sign_in

  2. Setup Minio bucket:

    1. Sign in to https://minio.magnetdb-dev.local/ with minio/minio123
    2. Create bucket on https://minio.magnetdb-dev.local/add-bucket

  3. Run migrations:

Connect to magnetdb-api container

docker exec -it magnetdb-api bash
poetry run python3 manage.py migrate

  1. Run seeds:

    To run this step you must have a '/data' directory. Connect to magnetdb-api container, check the directory is mounted, then

export DATA_DIR=/data
poetry run python3 -m python_magnetdb.seeds.seeds
poetry run python3 -m python_magnetdb.seeds.seed-again
poetry run python3 -m python_magnetdb.seeds.seed-records
  1. PgAdmin setup

Load https://pgadmin.magnetdb-dev.local/ in your web browser add a server for magnetdb

magnetdb ip DB server shall be: magnetdb-postgres